| ID | Name | Evidence |
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | IDA |
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | ISO |
| GO:0001501 | skeletal system development | IGI |
| GO:0001666 | response to hypoxia | ISO |
| GO:0001701 | in utero embryonic development | IGI |
| GO:0001707 | mesoderm formation | IMP |
| GO:0001756 | somitogenesis | IMP |
| GO:0001836 | release of cytochrome c from mitochondria | ISO |
| GO:0001889 | liver development | IGI |
| GO:0001933 | negative regulation of protein phosphorylation | ISO |
| GO:0001947 | heart looping | IGI |
| GO:0002076 | osteoblast development | IGI |
| GO:0002520 | immune system development | IGI |
| GO:0006351 | transcription, DNA-dependent | ISO |
| GO:0006355 | regulation of transcription, DNA-dependent | IEA |
| GO:0006366 | transcription from RNA polymerase II promoter | TAS |
| GO:0006810 | transport | ISO |
| GO:0006917 | induction of apoptosis | ISO |
| GO:0006919 | activation of caspase activity | ISO |
| GO:0006955 | immune response | ISO |
| GO:0007050 | cell cycle arrest | ISO |
| GO:0007179 | transforming growth factor beta receptor signaling pathway | ISO |
| GO:0007179 | transforming growth factor beta receptor signaling pathway | TAS |
| GO:0007183 | SMAD protein complex assembly | ISO |
| GO:0007369 | gastrulation | IGI |
| GO:0007492 | endoderm development | IGI |
| GO:0008285 | negative regulation of cell proliferation | ISO |
| GO:0008633 | activation of pro-apoptotic gene products | ISO |
| GO:0008637 | apoptotic mitochondrial changes | ISO |
| GO:0009880 | embryonic pattern specification | IGI |
| GO:0010694 | positive regulation of alkaline phosphatase activity | ISO |
| GO:0010718 | positive regulation of epithelial to mesenchymal transition | ISO |
| GO:0016202 | regulation of striated muscle tissue development | IDA |
| GO:0017015 | regulation of transforming growth factor beta receptor signaling pathway | IDA |
| GO:0017015 | regulation of transforming growth factor beta receptor signaling pathway | ISO |
| GO:0019049 | evasion of host defenses by virus | ISO |
| GO:0030308 | negative regulation of cell growth | ISO |
| GO:0030335 | positive regulation of cell migration | ISO |
| GO:0030501 | positive regulation of bone mineralization | ISO |
| GO:0030878 | thyroid gland development | IGI |
| GO:0032731 | positive regulation of interleukin-1 beta production | ISO |
| GO:0032909 | regulation of transforming growth factor-beta2 production | ISO |
| GO:0032916 | positive regulation of transforming growth factor-beta3 production | ISO |
| GO:0035413 | positive regulation of catenin import into nucleus | ISO |
| GO:0042110 | T cell activation | IMP |
| GO:0042177 | negative regulation of protein catabolic process | ISO |
| GO:0042993 | positive regulation of transcription factor import into nucleus | ISO |
| GO:0043066 | negative regulation of apoptosis | ISO |
| GO:0045216 | cell-cell junction organization | ISO |
| GO:0045668 | negative regulation of osteoblast differentiation | IGI |
| GO:0045893 | positive regulation of transcription, DNA-dependent | IDA |
| GO:0045893 | positive regulation of transcription, DNA-dependent | ISO |
| GO:0045930 | negative regulation of mitotic cell cycle | ISO |
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | IDA |
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | IGI |
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | ISO |
| GO:0048340 | paraxial mesoderm morphogenesis | IMP |
| GO:0048589 | developmental growth | IGI |
| GO:0048617 | embryonic foregut morphogenesis | IGI |
| GO:0048701 | embryonic cranial skeleton morphogenesis | IGI |
| GO:0050678 | regulation of epithelial cell proliferation | IMP |
| GO:0050776 | regulation of immune response | IMP |
| GO:0050821 | protein stabilization | ISO |
| GO:0050927 | positive regulation of positive chemotaxis | ISO |
| GO:0051098 | regulation of binding | IDA |
| GO:0051496 | positive regulation of stress fiber assembly | ISO |
| GO:0051894 | positive regulation of focal adhesion assembly | ISO |
| GO:0060039 | pericardium development | IGI |
| GO:0060290 | transdifferentiation | ISO |
| GO:0070306 | lens fiber cell differentiation | IMP |
| GO:0090263 | positive regulation of canonical Wnt receptor signaling pathway | ISO |