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Sequence in raw or FASTA format:


Blast Method:


Homo sapiens paired box 6 (PAX6), transcript variant 3, mRNA.

Clone ID Definition Vector Stock Status Price *Turnaround time Order
OHu20414 Homo sapiens paired box 6 (PAX6), transcript variant 3, mRNA. pcDNA3.1+-DYK In-stock $99.00 5-7
OHu20414C Homo sapiens paired box 6 (PAX6), transcript variant 3, mRNA. Customized vector In-stock $149.00 5-7

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Sequence Information ORF Nucleotide Sequence
Protein sequence
Vector pcDNA3.1+-DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1+-DYK N terminal DYKDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
RefSeq Version NM_001127612.1, 189083680
Length 1269 bp
Update Date 25-MAY-2014
Organism Homo sapiens (human)
Definition Homo sapiens paired box 6 (PAX6), transcript variant 3, mRNA.
Product paired box protein Pax-6 isoform a

Summary: This gene encodes paired box gene 6, one of many human homologs of the Drosophila melanogaster gene prd. In addition to the hallmark feature of this gene family, a conserved paired box domain, the encoded protein also contains a homeo box domain. Both domains are known to bind DNA and function as regulators of gene transcription. This gene is expressed in the developing nervous system, and in developing eyes. Mutations in this gene are known to cause ocular disorders such as aniridia and Peter's anomaly. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, May 2012].

Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 3, 6 and 7 encode the same isoform (a).

Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.

RefSeq NP_001121084.1
CDS 470..1738
Misc Feature(1)353..355
Misc Feature(2)353..355
Misc Feature(3)482..862
Misc Feature(4)482..862
Misc Feature(5)order(494..499,512..514,518..526,530..532,545..547,
Misc Feature(6)545..853
Misc Feature(7)1103..1276
Misc Feature(8)order(1103..1114,1118..1120,1169..1171,1187..1189,
Misc Feature(9)order(1106..1108,1115..1117,1235..1237,1244..1249,
Exon (1)1..153
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (2)154..341
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (3)342..418
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (4)419..479
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (5)480..610
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (6)611..826
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (7)827..992
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (8)993..1151
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (9)1152..1234
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (10)1235..1385
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (11)1386..1501
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (12)1502..1652
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
Exon (13)1653..6880
Gene Synonym:AN; AN2; D11S812E; MGDA; WAGR
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Position Chain Variation Link
complement(175)-t, gdbSNP:368691530
complement(290)-t, cdbSNP:75563367
complement(323)-t, cdbSNP:192375760
complement(357)-t, adbSNP:188423337
complement(363)-g, adbSNP:111270711
complement(431)-t, cdbSNP:370232963
complement(445)-g, adbSNP:376974874
complement(458)-t, cdbSNP:373532310
515+, gdbSNP:398123296
545+c, gdbSNP:121907913
581+c, tdbSNP:397514640
complement(599)-t, gdbSNP:141873759
605+c, gdbSNP:78692805
660+g, tdbSNP:121907920
671+c, tdbSNP:121907923
complement(716)-t, cdbSNP:372222637
776+c, tdbSNP:121907914
complement(796)-t, cdbSNP:114384476
complement(803)-g, adbSNP:112203531
826+a, cdbSNP:121907928
846+a, tdbSNP:121907919
851+c, tdbSNP:121907918
complement(862)-g, adbSNP:374436481
complement(865)-g, adbSNP:146769256
875+c, tdbSNP:121907912
complement(880)-t, cdbSNP:371018133
889+c, tdbSNP:1800427
complement(892)-g, cdbSNP:139803630
complement(897)-t, cdbSNP:201983312
complement(928)-g, adbSNP:201200280
complement(944)-g, adbSNP:372143889
complement(964)-g, cdbSNP:374226064
complement(965)-t, adbSNP:141021880
complement(969)-g, adbSNP:151086737
complement(1010)-t, cdbSNP:138803897
complement(1030)-g, cdbSNP:200080139
complement(1048)-g, adbSNP:367589686
complement(1049)-t, cdbSNP:374396492
1057+c, tdbSNP:3026383
1076+c, tdbSNP:121907916
1082+c, tdbSNP:121907924
complement(1117)-g, adbSNP:373715028
complement(1180)-t, cdbSNP:145329506
1187+c, tdbSNP:121907917
complement(1189)-t, cdbSNP:200916868
1194+c, gdbSNP:121907927
1240+a, gdbSNP:121907929
1242+c, tdbSNP:121907925
complement(1268)-t, cdbSNP:201846044
complement(1269)-c, adbSNP:199610944
complement(1273)-t, cdbSNP:200764930
complement(1277)-t, cdbSNP:201439078
complement(1300)-t, cdbSNP:149053004
complement(1327)-g, adbSNP:200631911
complement(1336)-g, adbSNP:202154006
complement(1384)-t, cdbSNP:146433004
complement(1405)-g, adbSNP:115833025
complement(1412)-g, adbSNP:373147550
1419+c, tdbSNP:75572362
complement(1426)-g, adbSNP:184589894
complement(1444)-g, adbSNP:371568746
complement(1450)-g, adbSNP:139416026
complement(1459)-t, cdbSNP:146261351
complement(1526)-c, adbSNP:373661718
1527+c, gdbSNP:121907915
complement(1552)-, gdbSNP:34615233
complement(1558)-t, cdbSNP:369447790
complement(1564)-g, adbSNP:200959420
complement(1587)-g, cdbSNP:201690439
complement(1593)-t, gdbSNP:200015827
complement(1606)-t, gdbSNP:143477661
1640+a, gdbSNP:121907926
complement(1663)-g, adbSNP:78290542
complement(1669)-c, adbSNP:372956285
complement(1693)-g, adbSNP:369180308
complement(1732)-t, gdbSNP:35727210
1737+a, tdbSNP:121907922
complement(1771)-t, adbSNP:186495466
complement(1842)-t, gdbSNP:201999673
complement(1862)-g, adbSNP:375196435
complement(2030)-t, gdbSNP:150518775
complement(2094)-, adbSNP:200391530
complement(2155)-g, adbSNP:55756603
complement(2341..2342)-, tdbSNP:369801879
2341+a, gdbSNP:3026394
complement(2379)-t, cdbSNP:181456283
complement(2501)-t, cdbSNP:368683181
complement(2521)-t, cdbSNP:189275679
complement(2580)-t, cdbSNP:115045926
complement(2615)-t, cdbSNP:185996251
complement(2801)-t, cdbSNP:117590302
complement(2806)-g, adbSNP:11827725
2922+a, tdbSNP:1506
complement(3174)-t, cdbSNP:138035131
complement(3216)-g, adbSNP:181818313
complement(3342)-t, adbSNP:189545730
complement(3355)-g, adbSNP:185022053
3517+a, gdbSNP:3026395
complement(3524)-t, cdbSNP:192091385
complement(3676)-t, cdbSNP:189220045
complement(3847)-c, adbSNP:370447209
3897+a, cdbSNP:3026396
complement(3898)-t, cdbSNP:12421026
complement(3976)-c, adbSNP:73477658
complement(4039)-t, cdbSNP:371522277
complement(4043)-t, cdbSNP:73477656
complement(4150)-t, cdbSNP:662702
complement(4154)-c, adbSNP:79739975
4244+c, tdbSNP:3026397
4297+c, tdbSNP:141344418
complement(4435)-t, adbSNP:138881442
4445+c, tdbSNP:3026398
complement(4516)-g, adbSNP:184858724
complement(4620)-g, adbSNP:143185259
complement(4628)-t, adbSNP:111506276
complement(4629)-t, adbSNP:111584109
4630..4631+, atttdbSNP:397795797
complement(4630)-t, adbSNP:112863817
complement(4633..4634)-, aaatdbSNP:371844951
complement(4633..4634)-, aaatdbSNP:386373498
complement(4634..4635)-, aaatdbSNP:10623053
complement(4635)-t, adbSNP:375367578
complement(4655)-c, adbSNP:372093736
complement(4715)-t, gdbSNP:192709453
4723+a, gdbSNP:3026399
complement(4723)-g, adbSNP:386578760
complement(4817)-t, cdbSNP:145696496
complement(4906)-g, adbSNP:187705792
4940+a, gdbSNP:608293
complement(4947)-g, adbSNP:182664507
complement(4982)-t, adbSNP:200326314
complement(4983..4984)-, aaaadbSNP:397768344
complement(4983)-g, adbSNP:202143838
complement(4984..4985)-, aaaadbSNP:34919147
4985+a, tdbSNP:3026400
complement(4986..4987)-, ataa, aaaadbSNP:138907979
complement(5056)-t, cdbSNP:371438311
complement(5166)-g, adbSNP:191399467
complement(5408)-g, adbSNP:149777109
complement(5474..5475)-, tgdbSNP:141022497
complement(5549)-t, cdbSNP:373404895
complement(5620)-g, adbSNP:187714007
complement(5623)-c, adbSNP:183433948
5696+a, gdbSNP:3026401
complement(5704)-g, adbSNP:190491652
complement(5799)-t, cdbSNP:200059324
complement(5978)-t, cdbSNP:374309046
complement(6034)-g, cdbSNP:16922475
complement(6035)-g, adbSNP:186769968
complement(6108)-g, cdbSNP:183115097
complement(6325)-g, adbSNP:191251943
complement(6337)-c, adbSNP:185968715
complement(6365)-t, gdbSNP:140971065
complement(6434)-g, cdbSNP:180780893
complement(6523..6524)-, tdbSNP:35674517
complement(6580)-g, adbSNP:188417347
complement(6846)-t, cdbSNP:146579778
Gene SymbolPAX6
Gene SynonymAN; AN2; D11S812E; MGDA; WAGR
Locus Map11p13
Title PAX6, a novel target of microRNA-7, promotes cellular proliferation and invasion in human colorectal cancer cells .
Author Li Y, Li Y, Liu Y, Xie P, Li F and Li G.
Journal Dig. Dis. Sci. 59 (3), 598-606 (2014)
Title Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia .
Author Bhatia S, Bengani H, Fish M, Brown A, Divizia MT, de Marco R, Damante G, Grainger R, van Heyningen V and Kleinjan DA.
Journal Am. J. Hum. Genet. 93 (6), 1126-1134 (2013)
Title [Identification of a novel PAX6 mutation in a family with congenital aniridia] .
Author Li J, Zhao L, Cai XJ, Lu L and Li G.
Journal Zhonghua Yi Xue Yi Chuan Xue Za Zhi 30 (5), 579-581 (2013)
Title Concise review: Pax6 transcription factor contributes to both embryonic and adult neurogenesis as a multifunctional regulator .
Author Osumi N, Shinohara H, Numayama-Tsuruta K and Maekawa M.
Journal Stem Cells 26 (7), 1663-1672 (2008)
Title Missense mutation in the alternative splice region of the PAX6 gene in eye anomalies .
Author Azuma N, Yamaguchi Y, Handa H, Hayakawa M, Kanai A and Yamada M.
Journal Am. J. Hum. Genet. 65 (3), 656-663 (1999)
Title PAX6 mutations reviewed .
Author Prosser J and van Heyningen V.
Journal Hum. Mutat. 11 (2), 93-108 (1998)
Title Anophthalmia/Microphthalmia Overview .
Author Bardakjian,T., Weiss,A. and Schneider,A.S.
Journal (in) Pagon RA, Adam MP, Ardinger HH, Bird TD, Dolan CR, Fong CT, Smith RJH and Stephens K (Eds.); GENEREVIEWS(R); (1993)
Title Aniridia .
Author Hingorani,M. and Moore,A.
Journal (in) Pagon RA, Adam MP, Ardinger HH, Bird TD, Dolan CR, Fong CT, Smith RJH and Stephens K (Eds.); GENEREVIEWS(R); (1993)
Title Genomic structure, evolutionary conservation and aniridia mutations in the human PAX6 gene .
Author Glaser T, Walton DS and Maas RL.
Journal Nat. Genet. 2 (3), 232-239 (1992)
Title The human PAX6 gene is mutated in two patients with aniridia .
Author Jordan T, Hanson I, Zaletayev D, Hodgson S, Prosser J, Seawright A, Hastie N and van Heyningen V.
Journal Nat. Genet. 1 (5), 328-332 (1992)

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