• THAT   AND
  • THAT   AND


Homo sapiens major histocompatibility complex, class II, DQ beta 1 (HLA-DQB1), mRNA.


RefSeq Accession Definition Sequence Price Select
NM_002123 Homo sapiens major histocompatibility complex, class II, DQ beta 1 (HLA-DQB1), mRNA. Full Lenth $359.89
ORF Sequence $227.94


RefSeq Version NM_002123.3, 150418001
Length 1241 bp
Structure linear
Update Date 16-APR-2011
Organism Homo sapiens (human)
Definition Homo sapiens major histocompatibility complex, class II, DQ beta 1 (HLA-DQB1), mRNA.
Product HLA class II histocompatibility antigen, DQ beta 1 chain precursor
Comment

Summary: HLA-DQB1 belongs to the HLA class II beta chain paralogs. This class II molecule is a heterodimer consisting of an alpha (DQA) and a beta chain (DQB), both anchored in the membrane. It plays a central role in the immune system by presenting peptides derived from extracellular proteins. Class II molecules are expressed in antigen presenting cells (APC: B lymphocytes, dendritic cells, macrophages). The beta chain is approximately 26-28 kDa and it contains 6 exons. Exon one encodes the leader peptide, exons 2 and 3 encode the two extracellular domains, exon 4 encodes the transmembrane domain and exon 5 encodes the cytoplasmic tail. Within the DQ molecule both the alpha chain and the beta chain contain the polymorphisms specifying the peptide binding specificities, resulting in up to 4 different molecules. Typing for these polymorphisms is routinely done for bone marrow transplantation. [provided by RefSeq].

RefSeq NP_002114.3
CDS 83..868
Exon (1)1..191
Exon (2)1..191
Exon (3)192..461
Exon (4)462..743
Exon (5)744..854
Exon (6)855..1224
Translation MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL GLIFLGLGLIIRQRSQKGLLH
Order your protein of interest with our Guaranteed or It's Free Service now! For details, please click here.
Position Chain Variation Link
20+c, gdbSNP:3210146
complement(20)-g, cdbSNP:117829618
complement(41)-g, adbSNP:111933157
complement(41)-g, adbSNP:67147537
42+a, gdbSNP:1049070
48+a, tdbSNP:3210147
complement(60..62)-, cagdbSNP:67819715
complement(61..62)-, cagdbSNP:9280060
complement(62..64)-, agcdbSNP:71789649
62+a, gdbSNP:1049053
complement(62)-t, cdbSNP:75161319
complement(73)-g, adbSNP:117410658
80+a, gdbSNP:1049055
complement(94)-t, cdbSNP:9274522
98+g, tdbSNP:1049056
112+c, tdbSNP:1049072
117+a, gdbSNP:1049057
complement(117)-t, cdbSNP:76331164
126+a, c, tdbSNP:3189152
complement(128)-g, cdbSNP:116896182
136+c, g, tdbSNP:1049058
149+g, tdbSNP:3891176
154+c, gdbSNP:1049059
161+a, g, tdbSNP:1049060
complement(164..165)-ag, gadbSNP:67851506
164+c, tdbSNP:1049061
165+c, tdbSNP:1049062
166+a, gdbSNP:1130373
167+c, gdbSNP:1130366
185+c, tdbSNP:12722106
203+c, tdbSNP:12722107
complement(204)-t, adbSNP:9274407
complement(204)-t, adbSNP:77051381
complement(204)-t, adbSNP:78476585
complement(205)-t, gdbSNP:111588946
211+a, tdbSNP:56173496
216+c, gdbSNP:1130375
218+a, cdbSNP:1130368
219+c, gdbSNP:41556424
235+c, tdbSNP:76033807
235+c, tdbSNP:3204373
238+c, gdbSNP:72558170
241+a, c, gdbSNP:1049079
246+g, tdbSNP:41540813
complement(253..255)-ccc, agadbSNP:74184882
253+g, tdbSNP:1140310
254+c, g, tdbSNP:12722115
255+a, g, tdbSNP:1049066
257+c, gdbSNP:41563539
259+a, gdbSNP:1049068
complement(259)-t, cdbSNP:79502177
complement(261)-g, cdbSNP:9274405
263+a, tdbSNP:41553112
266+a, c, tdbSNP:1049069
266+c, tdbSNP:77080306
complement(267)-t, cdbSNP:9274403
277+c, tdbSNP:45496594
279+a, c, gdbSNP:75769070
complement(283)-t, cdbSNP:9274402
287+a, g, tdbSNP:1130370
complement(288)-t, adbSNP:9274400
290+a, gdbSNP:45519640
291+c, tdbSNP:1063318
292+a, gdbSNP:1049082
312+a, gdbSNP:1049083
complement(315)-t, adbSNP:9274398
complement(318)-t, adbSNP:9274397
319+c, tdbSNP:1049073
322+c, gdbSNP:3210148
324+c, tdbSNP:41558214
325+a, gdbSNP:1049074
331+c, gdbSNP:41561518
complement(333)-g, adbSNP:9274395
336+a, tdbSNP:1140313
342+a, c, g, tdbSNP:1130380
343+c, gdbSNP:41557617
345+c, tdbSNP:1130381
347+a, gdbSNP:41552812
348+a, c, g, tdbSNP:1071637
349+c, tdbSNP:1140314
356+a, tdbSNP:41562414
358+c, tdbSNP:41543717
364+c, tdbSNP:1130382
367+c, gdbSNP:41556215
complement(376)-t, gdbSNP:9274390
complement(377)-t, cdbSNP:9274389
378+a, tdbSNP:41563814
386+a, gdbSNP:1130386
387+a, gdbSNP:41563819
389+a, gdbSNP:1130390
complement(390)-t, gdbSNP:9274387
complement(391)-t, gdbSNP:9274386
394+a, gdbSNP:3204379
398+g, tdbSNP:1130385
399+a, cdbSNP:1130387
complement(399)-tc, gadbSNP:74195786
complement(401)-g, c, adbSNP:9274384
408+c, gdbSNP:1130392
409+a, c, gdbSNP:1130389
412+a, gdbSNP:1130391
428+c, gdbSNP:1140316
431+g, tdbSNP:1140317
complement(435)-t, g, cdbSNP:9274380
complement(437)-g, adbSNP:9274379
438+a, tdbSNP:17412833
443+a, gdbSNP:1140318
444+c, gdbSNP:1140319
447+c, tdbSNP:1140320
449+c, tdbSNP:1130397
455+a, cdbSNP:1140321
458+a, cdbSNP:1140322
complement(462)-, tcdbSNP:9282131
complement(463)-, g, adbSNP:9274030
complement(464)-, t, cdbSNP:9274029
465+, gdbSNP:41546916
complement(466)-, t, cdbSNP:9282130
467+, gdbSNP:41542716
468+, cdbSNP:41550312
469+, cdbSNP:41543319
470+, cdbSNP:41542118
complement(471)-, t, adbSNP:9274028
472+, cdbSNP:41560717
473+, adbSNP:41545112
complement(474)-, t, cdbSNP:9274027
complement(475)-, g, adbSNP:9274026
complement(476)-, g, cdbSNP:9274025
477+, adbSNP:41558012
478+, cdbSNP:41562015
complement(479)-, tgt, gdbSNP:9282129
480+, adbSNP:41561417
complement(481)-, g, adbSNP:9274024
482+, cdbSNP:41546013
483+, tdbSNP:41560420
complement(484)-, g, cdbSNP:9274023
complement(485)-g, adbSNP:9274022
complement(486)-g, cdbSNP:9274021
complement(487)-t, cdbSNP:9274020
complement(489..490)-, agcadbSNP:9282128
complement(492..493)-, adbSNP:9282127
complement(500)-, c, adbSNP:9274019
complement(501)-g, adbSNP:9274018
complement(502)-g, adbSNP:9274017
complement(504..505)-, gdbSNP:9280021
complement(507)-t, adbSNP:9274016
complement(511)-g, cdbSNP:9274015
complement(513)-, tdbSNP:9280020
complement(515)-t, gdbSNP:9274014
complement(517)-g, cdbSNP:9274013
complement(518)-t, gdbSNP:9274012
complement(520)-g, cdbSNP:9274011
complement(521)-t, gdbSNP:9274010
complement(522)-t, adbSNP:9274009
complement(523)-t, cdbSNP:9274008
524+a, gdbSNP:1049100
complement(524)-t, cdbSNP:77166284
complement(524)-t, cdbSNP:77501678
complement(527)-g, adbSNP:9274007
complement(529)-g, cdbSNP:9274006
complement(530..531)-, t, g, cdbSNP:9280019
532+a, gdbSNP:1063321
complement(535)-c, adbSNP:9274005
complement(536)-t, adbSNP:9274004
complement(538)-t, cdbSNP:9274003
complement(541)-t, adbSNP:9274002
complement(545)-, c, a, gadbSNP:9274001
complement(546..547)-, adbSNP:9280017
551+a, gdbSNP:1049107
complement(551)-t, cdbSNP:77933679
complement(551)-t, cdbSNP:80055414
complement(551)-t, cdbSNP:80095453
complement(552)-g, cdbSNP:113231645
552+, a, c, gdbSNP:1063322
complement(553)-g, cdbSNP:9273999
complement(554)-g, cdbSNP:9273998
complement(556)-g, cdbSNP:76051596
556+c, gdbSNP:41542812
complement(557..558)-, adbSNP:9280016
complement(562)-t, gdbSNP:9273997
complement(563)-c, adbSNP:9273996
complement(564)-c, adbSNP:9273995
complement(565)-g, cdbSNP:9273994
567+a, gdbSNP:41544112
complement(567)-t, cdbSNP:77483500
complement(568)-c, adbSNP:9273993
complement(571)-c, adbSNP:9273992
complement(572)-c, adbSNP:9273991
complement(574)-g, adbSNP:9273990
575+c, tdbSNP:63626961
complement(576)-t, cdbSNP:9273989
complement(577)-g, cdbSNP:9273988
complement(578)-t, gdbSNP:9273987
complement(579)-t, gdbSNP:9273986
complement(580)-g, adbSNP:9273985
complement(581)-g, cdbSNP:9273984
582+a, c, gdbSNP:2647032
583+c, tdbSNP:1049086
complement(583)-g, adbSNP:76725352
complement(584)-g, c, adbSNP:9273981
complement(586)-c, adbSNP:9273980
complement(587)-c, adbSNP:9273979
589+a, gdbSNP:41543118
complement(591..592)-, cdbSNP:9280015
596+a, gdbSNP:74888860
596+, a, gdbSNP:1063323
complement(597)-g, cdbSNP:9273978
598+c, tdbSNP:1049087
complement(598)-g, adbSNP:74356558
complement(600)-t, cdbSNP:9273976
complement(602..603)-, acdbSNP:9280013
complement(605..606)-, adbSNP:9280012
complement(608)-t, adbSNP:9273975
complement(612)-, t, g, adbSNP:9273974
complement(613)-g, adbSNP:9273973
complement(616)-t, gdbSNP:9273972
complement(617)-g, cdbSNP:9273971
complement(618)-t, adbSNP:9273970
619+a, c, tdbSNP:1049088
complement(619)-g, adbSNP:76163881
619+c, tdbSNP:36233042
complement(619)-g, adbSNP:79326791
complement(621)-g, adbSNP:9273968
complement(623)-t, cdbSNP:9273967
complement(625)-c, adbSNP:9273966
complement(626)-t, cdbSNP:9273965
628+c, tdbSNP:1049130
complement(628)-g, adbSNP:17850864
complement(628)-g, adbSNP:76605345
complement(628)-g, adbSNP:75156092
complement(630)-g, cdbSNP:9273964
complement(631..632)-, cdbSNP:9282125
complement(634)-t, gdbSNP:9273963
complement(635)-t, adbSNP:9273962
complement(636)-c, adbSNP:9273961
640+c, tdbSNP:1049133
complement(640)-g, adbSNP:79862994
complement(642)-g, adbSNP:9273958
complement(647..648)-, atdbSNP:9280010
complement(650)-g, cdbSNP:9273957
complement(654)-t, adbSNP:9273956
654+a, tdbSNP:75688764
complement(657)-g, adbSNP:74577791
complement(657)-g, adbSNP:9273955
complement(658..659)-, adbSNP:9282124
complement(661)-t, cdbSNP:9273954
complement(662)-g, cdbSNP:9273953
662+c, gdbSNP:76620513
complement(664)-t, gdbSNP:9273952
complement(665)-t, gdbSNP:9273951
complement(668)-t, gdbSNP:9273950
complement(670)-t, adbSNP:9273949
complement(671..672)-, cdbSNP:9282123
complement(672)-g, adbSNP:9273948
complement(672)-g, adbSNP:79544603
complement(673)-g, cdbSNP:9273947
complement(674)-g, cdbSNP:9273946
complement(677..678)-, tdbSNP:9282122
678+a, c, g, tdbSNP:701564
complement(678)-t, cdbSNP:79713081
678+a, gdbSNP:78854068
complement(680)-, g, cdbSNP:9273943
complement(681)-, g, cdbSNP:9273942
682+, adbSNP:41548921
684+a, cdbSNP:41559620
complement(685)-g, adbSNP:76063882
complement(685)-g, adbSNP:75643968
complement(685)-g, adbSNP:112692669
685+, a, c, g, tdbSNP:1049092
686+a, gdbSNP:80255621
complement(689)-g, adbSNP:9273939
complement(691)-g, cdbSNP:9273938
complement(692..693)-, gtdbSNP:9282121
complement(695)-g, adbSNP:9273937
complement(696)-t, cdbSNP:9273936
complement(697)-g, adbSNP:9273935
complement(699..700)-, adbSNP:9282120
complement(707)-g, adbSNP:9273934
complement(708)-t, cdbSNP:9273933
complement(709)-g, cdbSNP:9273932
complement(711)-g, cdbSNP:9273931
complement(712)-g, adbSNP:9273930
complement(713..714)-, cctdbSNP:9282119
complement(715)-g, cdbSNP:9273929
complement(716)-t, gdbSNP:9273928
complement(718)-t, gdbSNP:9273927
complement(719)-g, adbSNP:9273926
complement(720)-t, adbSNP:9273925
complement(723..724)-, adbSNP:9282118
723+a, c, g, tdbSNP:1130398
complement(723)-t, cdbSNP:80225756
complement(725)-g, adbSNP:9273923
complement(727)-g, adbSNP:9273922
complement(728)-t, cdbSNP:9273921
complement(730)-g, adbSNP:9273920
732+c, tdbSNP:1130399
complement(732)-g, adbSNP:75568288
complement(732)-g, adbSNP:76322373
complement(734)-t, cdbSNP:9273918
complement(734)-t, cdbSNP:80147466
complement(738)-, tdbSNP:9280008
complement(740)-g, adbSNP:9273917
complement(741)-g, cdbSNP:9273916
complement(742)-g, cdbSNP:9273915
743+c, tdbSNP:63267060
complement(744)-t, cdbSNP:9273667
complement(746)-g, cdbSNP:9273666
complement(747)-t, gdbSNP:9273665
complement(748)-t, adbSNP:9273664
complement(749)-g, cdbSNP:9273663
complement(751)-t, c, adbSNP:9273660
complement(759)-, at, g, cdbSNP:9273659
complement(763)-, g, cdbSNP:9273658
complement(766)-c, adbSNP:9273657
complement(767)-t, adbSNP:9273656
768+a, c, gdbSNP:1130429
complement(771)-t, cdbSNP:9273654
complement(773)-t, gdbSNP:9273653
complement(775)-c, adbSNP:9273652
complement(776..777)-, adbSNP:9279976
complement(779)-t, c, adbSNP:9273651
complement(780..781)-, gdbSNP:9282094
complement(784)-g, c, adbSNP:9273650
complement(784)-g, adbSNP:77643116
785+a, c, g, tdbSNP:1049163
complement(788..789)-, tdbSNP:9282093
complement(789)-c, adbSNP:9273647
complement(790)-t, gdbSNP:9273646
complement(791)-c, adbSNP:9273645
complement(792)-c, adbSNP:9273644
complement(794)-g, adbSNP:9273643
complement(798)-c, adbSNP:9273642
complement(805)-g, cdbSNP:9273641
808+c, g, tdbSNP:1130410
complement(811)-g, adbSNP:9273639
complement(812)-t, adbSNP:9273638
complement(816)-t, adbSNP:9273637
817+c, tdbSNP:1130430
817+c, tdbSNP:35457576
complement(819)-, g, cdbSNP:9273635
complement(820)-t, cdbSNP:9273634
823+g, tdbSNP:17412886
complement(823)-c, adbSNP:77960343
823+, a, g, tdbSNP:1130431
complement(826)-t, gdbSNP:9273632
complement(827)-g, cdbSNP:9273631
complement(829)-g, adbSNP:9273630
complement(832)-g, adbSNP:112517017
832+, c, g, tdbSNP:3210168
complement(834)-t, adbSNP:9273628
complement(835)-t, gdbSNP:9273627
complement(836)-g, cdbSNP:9273626
837+a, gdbSNP:1140342
837+a, gdbSNP:34134876
complement(839..840)-, tgdbSNP:9279972
841+a, c, gdbSNP:1140343
complement(846)-t, cdbSNP:9273622
complement(847)-g, adbSNP:9273621
849+a, c, gdbSNP:1130432
849+a, gdbSNP:17412893
complement(853)-t, cdbSNP:9273618
859+c, tdbSNP:1140347
880+a, gdbSNP:17416274
complement(880)-t, cdbSNP:74636670
complement(889)-t, c, adbSNP:9273469
890+a, gdbSNP:17416288
complement(890)-t, cdbSNP:78557713
complement(893)-g, adbSNP:76263361
893+c, tdbSNP:17412900
complement(893)-g, adbSNP:113129258
905+a, c, g, tdbSNP:1063345
complement(912)-t, cdbSNP:9273467
complement(914)-g, adbSNP:9273466
923+a, gdbSNP:7656
925+c, g, tdbSNP:1063347
complement(943)-t, cdbSNP:41269989
complement(947)-g, adbSNP:9273463
complement(958)-g, adbSNP:9273462
967+, tdbSNP:3842708
975+a, gdbSNP:1063349
complement(996)-t, cdbSNP:113664950
complement(998)-t, adbSNP:76228204
complement(999)-t, cdbSNP:74785819
999+a, gdbSNP:1071639
1029+c, tdbSNP:1130420
complement(1030)-c, adbSNP:9273459
1031+a, gdbSNP:3210176
complement(1034..1035)-, cdbSNP:66772188
complement(1035..1036)-, c, adbSNP:9282076
1037+a, c, gdbSNP:1130422
complement(1048)-g, adbSNP:1770
complement(1051)-t, cdbSNP:9273455
complement(1063)-c, adbSNP:115749644
complement(1069)-g, cdbSNP:9273453
1074+a, c, tdbSNP:1049122
complement(1074)-t, adbSNP:76918155
complement(1083)-t, cdbSNP:78083269
1083+a, gdbSNP:1071641
complement(1086)-g, adbSNP:1766
complement(1086)-g, adbSNP:76734826
complement(1086)-g, adbSNP:78924926
1087+a, gdbSNP:1049123
complement(1096)-g, adbSNP:1764
complement(1096)-g, adbSNP:117396570
complement(1097)-t, cdbSNP:79173012
complement(1097)-t, cdbSNP:78372297
complement(1104)-g, cdbSNP:79471319
1108+c, tdbSNP:1049213
1118+a, tdbSNP:1049219
1118+a, tdbSNP:16871438
1129+a, gdbSNP:1049222
complement(1129)-t, cdbSNP:75420232
complement(1134)-g, adbSNP:74485399
complement(1134)-g, adbSNP:76484425
1134+c, tdbSNP:1049225
1167+a, cdbSNP:1063355
complement(1167)-t, gdbSNP:77119248
1167+a, cdbSNP:74466734
1167+a, cdbSNP:113823206
1168+c, tdbSNP:1049124
1181+c, tdbSNP:6689
complement(1181)-g, adbSNP:77762292
complement(1185..1186)-, adbSNP:71866696
Gene SymbolHLA-DQB1
Gene SynonymCELIAC1; HLA-DQB; IDDM1
Chromosome6
Locus Map6p21.3
All Transcripts NM_002123
Title High frequency of low-risk human leukocyte antigen class II genotypes in latent celiac disease .
Author Schirru,E., Jores,R.D., Cicotto,L., Frau,F., De Virgiliis,S., Rossino,R., Macis,M.D., Lampis,R. and Congia,M.
Journal Hum. Immunol. 72 (2), 179-182 (2011)
Title Genome-wide association study identifies susceptibility loci for IgA nephropathy .
Author Gharavi,A.G., Kiryluk,K., Choi,M., Li,Y., Hou,P., Xie,J., Sanna-Cherchi,S., Men,C.J., Julian,B.A., Wyatt,R.J., Novak,J., He,J.C., Wang,H., Lv,J., Zhu,L., Wang,W., Wang,Z., Yasuno,K., Gunel,M., Mane,S., Umlauf,S., Tikhonova,I., Beerman,I., Savoldi,S., Magistroni,R., Ghiggeri,G.M., Bodria,M., Lugani,F., Ravani,P., Ponticelli,C., Allegri,L., Boscutti,G., Frasca,G., Amore,A., Peruzzi,L., Coppo,R., Izzi,C., Viola,B.F., Prati,E., Salvadori,M., Mignani,R., Gesualdo,L., Bertinetto,F., Mesiano,P., Amoroso,A., Scolari,F., Chen,N., Zhang,H. and Lifton,R.P.
Journal Nat. Genet. 43 (4), 321-327 (2011)
Title The relationship between human leukocyte antigens (HLA) and renal cell carcinoma .
Author Yilmaz,E., Cekmen,A., Akkus,E., Onal,B., Ozalp,A.U., Solok,V., Erdogan,E. and Eren,B.
Journal Bosn J Basic Med Sci 10 (4), 282-286 (2010)
Title Frequency of HLA-DQA1*0501 and DQB1*0201 alleles in patients with coeliac disease, their first-degree relatives and controls in Jordan .
Author El-Akawi,Z.J., Al-Hattab,D.M. and Migdady,M.A.
Journal Ann Trop Paediatr 30 (4), 305-309 (2010)
Title Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset .
Author Khankhanian,P., Gourraud,P.A., Caillier,S.J., Santaniello,A., Hauser,S.L., Baranzini,S.E. and Oksenberg,J.R.
Journal BMC Genomics 11, 626 (2010)
Title Report on the sequence of DQB1*0301 gene in ocular cicatricial pemphigoid patients .
Author Haider,N., Neuman,R., Foster,C.S. and Ahmed,A.R.
Journal Curr. Eye Res. 11 (12), 1233-1238 (1992)
Title Molecular analysis of novel HLA-DR2.DQwl haplotypes in Asian Indians .
Author Singal,D.P., Qiu,X. and Sood,S.K.
Journal Tissue Antigens 40 (2), 104-107 (1992)
Title A rare HLA DQB allele sequenced from patients with systemic lupus erythematosus .
Author Fronek,Z., Timmerman,L.A. and McDevitt,H.O.
Journal Hum. Immunol. 30 (2), 77-84 (1991)
Title Full length beta chain cDNAs of DQw9 and DQw8 molecules encode proteins that differ only at amino acid 57 .
Author Giorda,R., Turco,E. and Trucco,M.
Journal Immunogenetics 33 (5-6), 404-408 (1991)
Title Rapid typing of HLA-DQB1 DNA polymorphism using nonradioactive oligonucleotide probes and amplified DNA .
Author Bugawan,T.L. and Erlich,H.A.
Journal Immunogenetics 33 (3), 163-170 (1991)

Our customer service representatives are available 24 hours a day, Monday through Friday; please contact us anytime for assistance.

Secured Online Quotation
Email: gene@genscript.com
Phone: 1-877-436-7274 (Toll-Free) 1-732-885-9188
Fax: 1-732-210-0262 1-732-885-5878