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Homo sapiens pyruvate dehydrogenase complex, component X (PDHX), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.


RefSeq Accession Definition Sequence Price Select
NM_003477 Homo sapiens pyruvate dehydrogenase complex, component X (PDHX), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA. Full Lenth $867.39
ORF Sequence $436.74


RefSeq Version NM_003477.2, 203098752
Length 2991 bp
Structure linear
Update Date 09-APR-2011
Organism Homo sapiens (human)
Definition Homo sapiens pyruvate dehydrogenase complex, component X (PDHX), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.
Product pyruvate dehydrogenase protein X component, mitochondrial isoform 1 precursor
Comment

Summary: The pyruvate dehydrogenase (PDH) complex is located in the mitochondrial matrix and catalyzes the conversion of pyruvate to acetyl coenzyme A. The PDH complex thereby links glycolysis to Krebs cycle. The PDH complex contains three catalytic subunits, E1, E2, and E3, two regulatory subunits, E1 kinase and E1 phosphatase, and a non-catalytic subunit, E3 binding protein (E3BP). This gene encodes the E3 binding protein subunit; also known as component X of the pyruvate dehydrogenase complex. This protein tethers E3 dimers to the E2 core of the PDH complex. Defects in this gene are a cause of pyruvate dehydrogenase deficiency which results in neurological dysfunction and lactic acidosis in infancy and early childhood. This protein is also a minor antigen for antimitochondrial antibodies. These autoantibodies are present in nearly 95% of patients with the autoimmune liver disease primary biliary cirrhosis (PBC). In PBC, activated T lymphocytes attack and destroy epithelial cells in the bile duct where this protein is abnormally distributed and overexpressed. PBC eventually leads to cirrhosis and liver failure. Alternative splicing results in multiple transcript variants encoding distinct isoforms.


Transcript Variant: This variant (1) encodes the longest isoform (1).


Sequence Note: Sequence Note: The RefSeq transcript and protein were derived from transcript and genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.

RefSeq NP_003468.2
CDS 527..2032
Exon (1)1..686
Exon (2)1..686
Exon (3)687..767
Exon (4)768..868
Exon (5)869..1068
Exon (6)1069..1167
Exon (7)1168..1342
Exon (8)1343..1490
Exon (9)1491..1549
Exon (10)1550..1708
Exon (11)1709..1773
Exon (12)1774..2988
Translation MAASWRLGCDPRLLRYLVGFPGRRSVGLVKGALGWSVSRGANWRWFHSTQWLRGDPIKIL MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK NIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTL RFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKITESRPTPAPTAT PTAPSPLQATAGPSYPRPVIPPVSTPGQPNAVGTFTEIPASNIRRVIAKRLTESKSTVPH AYATADCDLGAVLKVRQDLVKDDIKVSVNDFIIKAAAVTLKQMPDVNVSWDGEGPKQLPF IDISVAVATDKGLLTPIIKDAAAKGIQEIADSVKALSKKARDGKLLPEEYQGGSFSISNL GMFGIDEFTAVINPPQACILAVGRFRPVLKLTEDEEGNAKLQQRQLITVTMSSDSRVVDD ELATRFLKSFKANLENPIRLA
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Position Chain Variation Link
5+g, tdbSNP:35924042
21+c, tdbSNP:2016814
22+a, gdbSNP:16926448
complement(137)-t, cdbSNP:2956114
complement(208)-t, cdbSNP:2956113
complement(225)-t, cdbSNP:2956112
complement(225)-t, cdbSNP:11549076
complement(255)-t, cdbSNP:2956111
325+a, gdbSNP:113073242
398+c, tdbSNP:112032820
403+c, gdbSNP:116207892
complement(439)-t, gdbSNP:2956110
complement(523)-g, cdbSNP:3818401
573+a, cdbSNP:118136428
575+c, tdbSNP:116989244
complement(589)-g, adbSNP:2956109
593+c, tdbSNP:1049306
596+c, gdbSNP:11539201
634+c, tdbSNP:1049307
793+a, gdbSNP:111829480
827+a, gdbSNP:11539202
828+c, tdbSNP:61752924
845+a, gdbSNP:72912954
complement(865)-g, adbSNP:34582941
964+c, tdbSNP:75182779
1033+c, tdbSNP:79170416
1057+c, tdbSNP:76486106
1092+a, gdbSNP:61752925
1105+a, gdbSNP:61752926
1131+c, gdbSNP:78261532
1148+c, tdbSNP:61752927
1202+a, gdbSNP:112573215
1232+c, gdbSNP:113722325
1238+a, cdbSNP:118054792
1268+c, g, tdbSNP:113309941
1277+g, tdbSNP:1049311
1324+c, tdbSNP:61760973
complement(1384)-g, adbSNP:497582
1407+c, gdbSNP:111270862
complement(1483)-t, cdbSNP:36047324
complement(1502)-g, cdbSNP:35560997
1629+c, gdbSNP:116042642
1635+a, tdbSNP:17850649
1655+a, gdbSNP:75430333
1856+a, gdbSNP:75799989
complement(1857)-t, cdbSNP:34398018
2059+a, cdbSNP:74524673
2146+a, gdbSNP:76663700
2155+a, gdbSNP:59918794
2205+a, gdbSNP:75863418
2232+c, tdbSNP:16926653
complement(2518)-c, adbSNP:9326
2560+a, cdbSNP:1063351
complement(2676)-t, gdbSNP:7808
2677+a, gdbSNP:3210062
2710+a, gdbSNP:3210064
2713+c, tdbSNP:3210065
2731+a, gdbSNP:3210066
2767+a, gdbSNP:3210067
2794+c, tdbSNP:3210068
complement(2871)-g, adbSNP:956130
2922+c, tdbSNP:1049333
Gene SymbolPDHX
Gene SynonymDLDBP; E3BP; OPDX; PDX1; proX
Chromosome11
Locus Map11p13
All Transcripts NM_003477 , NM_001135024 , NM_001166158
Title Identification of a systemic lupus erythematosus susceptibility locus at 11p13 between PDHX and CD44 in a multiethnic study .
Author Lessard,C.J., Adrianto,I., Kelly,J.A., Kaufman,K.M., Grundahl,K.M., Adler,A., Williams,A.H., Gallant,C.J., Anaya,J.M., Bae,S.C., Boackle,S.A., Brown,E.E., Chang,D.M., Criswell,L.A., Edberg,J.C., Freedman,B.I., Gregersen,P.K., Gilkeson,G.S., Jacob,C.O., James,J.A., Kamen,D.L., Kimberly,R.P., Martin,J., Merrill,J.T., Niewold,T.B., Park,S.Y., Petri,M.A., Pons-Estel,B.A., Ramsey-Goldman,R., Reveille,J.D., Song,Y.W., Stevens,A.M., Tsao,B.P., Vila,L.M., Vyse,T.J., Yu,C.Y., Guthridge,J.M., Bruner,G.R., Langefeld,C.D., Montgomery,C., Harley,J.B., Scofield,R.H., Gaffney,P.M. and Moser,K.L.
Journal Am. J. Hum. Genet. 88 (1), 83-91 (2011)
Title Investigation of genetic susceptibility factors for human longevity - a targeted nonsynonymous SNP study .
Author Flachsbart,F., Franke,A., Kleindorp,R., Caliebe,A., Blanche,H., Schreiber,S. and Nebel,A.
Journal Mutat. Res. 694 (1-2), 13-19 (2010)
Title Genetic variants in nuclear-encoded mitochondrial genes influence .
Author Hendrickson,S.L., Lautenberger,J.A., Chinn,L.W., Malasky,M., Sezgin,E., Kingsley,L.A., Goedert,J.J., Kirk,G.D., Gomperts,E.D., Buchbinder,S.P., Troyer,J.L. and O'Brien,S.J.
Journal PLoS ONE 5 (9), E12862 (2010)
Title Pyruvate dehydrogenase E3 binding protein (protein X) deficiency .
Author Brown,R.M., Head,R.A., Morris,A.A., Raiman,J.A., Walter,J.H., Whitehouse,W.P. and Brown,G.K.
Journal Dev Med Child Neurol 48 (9), 756-760 (2006)
Title A novel gross deletion caused by non-homologous recombination of the PDHX gene in a patient with pyruvate dehydrogenase deficiency .
Author Mine,M., Brivet,M., Schiff,M., de Baulny,H.O., Chuzhanova,N. and Marsac,C.
Journal Mol. Genet. Metab. 89 (1-2), 106-110 (2006)
Title Dihydrolipoamide dehydrogenase-binding protein of the human pyruvate dehydrogenase complex. DNA-derived amino acid sequence, expression, and reconstitution of the pyruvate dehydrogenase complex .
Author Harris,R.A., Bowker-Kinley,M.M., Wu,P., Jeng,J. and Popov,K.M.
Journal J. Biol. Chem. 272 (32), 19746-19751 (1997)
Title Defect in the X-lipoyl-containing component of the pyruvate dehydrogenase complex in a patient with neonatal lactic acidemia .
Author Geoffroy,V., Fouque,F., Benelli,C., Poggi,F., Saudubray,J.M., Lissens,W., Meirleir,L.D., Marsac,C., Lindsay,J.G. and Sanderson,S.J.
Journal Pediatrics 97 (2), 267-272 (1996)
Title Recombinant expression and evaluation of the lipoyl domains of the dihydrolipoyl acetyltransferase component of the human pyruvate dehydrogenase complex .
Author Liu,S., Baker,J.C., Andrews,P.C. and Roche,T.E.
Journal Arch. Biochem. Biophys. 316 (2), 926-940 (1995)
Title Defects in the E2 lipoyl transacetylase and the X-lipoyl containing component of the pyruvate dehydrogenase complex in patients with lactic acidemia .
Author Robinson,B.H., MacKay,N., Petrova-Benedict,R., Ozalp,I., Coskun,T. and Stacpoole,P.W.
Journal J. Clin. Invest. 85 (6), 1821-1824 (1990)
Title The glucose-lactic acid cycle and gluconeogenesis .
Author Cori,C.F.
Journal Curr. Top. Cell. Regul. 18, 377-387 (1981)

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