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Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 1, mRNA.


RefSeq Accession Definition Services Price Order
NM_005676 Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 1, mRNA. ORF Sequence $809.97
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Antibody Services
Protein Services


RefSeq Version NM_005676.4, 325120979
Length 3412 bp
Structure linear
Update Date 17-APR-2013
Organism Homo sapiens (human)
Definition Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 1, mRNA.
Product RNA-binding protein 10 isoform 1
Comment

Summary: This gene encodes a nuclear protein that belongs to a family proteins that contain an RNA-binding motif. The encoded protein associates with hnRNP proteins and may be involved in regulating alternative splicing. Defects in this gene are the cause of the X-linked recessive disorder, TARP syndrome. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Mar 2011].


Transcript Variant: This variant (1) encodes isoform (1).


##Evidence-Data-START## Transcript exon combination :: BC008733.2 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025081, ERS025082 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

RefSeq NP_005667.2
CDS 394..3186
Misc Feature(1)55..57
Misc Feature(2)55..57
Misc Feature(3)541..543
Misc Feature(4)541..543
Misc Feature(5)571..573
Misc Feature(6)574..576
Misc Feature(7)658..660
Misc Feature(8)658..660
Misc Feature(9)664..666
Misc Feature(10)784..1011
Misc Feature(11)order(787..789,910..912,916..918)
Misc Feature(12)1003..1011
Misc Feature(13)1036..1110
Misc Feature(14)1255..1257
Misc Feature(15)1294..1536
Misc Feature(16)order(1300..1302,1426..1428,1432..1434)
Misc Feature(17)1528..1536
Misc Feature(18)1540..1542
Misc Feature(19)1942..1944
Misc Feature(20)2545..2547
Misc Feature(21)2560..2562
Misc Feature(22)2560..2562
Misc Feature(23)2587..2589
Misc Feature(24)2590..2592
Misc Feature(25)2590..2592
Misc Feature(26)2599..2601
Misc Feature(27)2599..2601
Misc Feature(28)2605..2607
Misc Feature(29)2605..2607
Misc Feature(30)2605..2607
Misc Feature(31)2734..2736
Misc Feature(32)2782..2784
Misc Feature(33)2782..2784
Misc Feature(34)2959..3096
Exon (1)1..268
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (2)269..410
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (3)411..594
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (4)595..825
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (5)826..895
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (6)896..969
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (7)970..1056
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (8)1057..1117
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (9)1118..1294
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (10)1295..1455
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (11)1456..1553
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (12)1554..1641
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (13)1642..1828
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (14)1829..1968
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (15)1969..2086
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (16)2087..2178
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (17)2179..2343
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (18)2344..2493
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (19)2494..2559
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (20)2560..2748
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (21)2749..2823
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (22)2824..2930
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (23)2931..3060
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Exon (24)3061..3402
Gene:RBM10
Gene Synonym:DXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
Translation MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL QILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQG GEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGP EASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQ SPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNA QSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWAR SLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDD RPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQL SGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGG ISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG ARGSSYGVTSTESYKETLHKTMVTRFNEAQ
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Position Chain Variation Link
141+g, tdbSNP:181770538
222+c, tdbSNP:12008422
245+c, tdbSNP:5952419
390+dbSNP:
390+c, gdbSNP:75445510
468+dbSNP:
468+c, tdbSNP:200766225
495+c, tdbSNP:200208681
502..503+, gdbSNP:34164525
647+dbSNP:
647+a, gdbSNP:139829599
654+a, gdbSNP:184096287
957+dbSNP:
957+a, gdbSNP:202102038
1011+dbSNP:
1011+a, cdbSNP:12852407
1140+dbSNP:
1140+c, tdbSNP:143244180
1141+a, gdbSNP:146686806
1166+c, tdbSNP:140296609
1362+dbSNP:
1362+c, tdbSNP:149920057
1386+c, gdbSNP:145036791
1422+c, tdbSNP:199835845
1497+dbSNP:
1497+a, gdbSNP:149109733
1568+dbSNP:
1568+a, gdbSNP:189102912
1609..1610+, cdbSNP:34179743
1623+c, gdbSNP:201959656
1628+a, gdbSNP:267607000
1662+dbSNP:
1662+c, tdbSNP:143203694
1685+c, tdbSNP:11551150
1686+a, gdbSNP:139013965
1754+c, tdbSNP:141518458
1838+dbSNP:
1838+c, gdbSNP:147041092
1861+c, tdbSNP:112632964
1869+a, gdbSNP:138358884
1929+c, tdbSNP:143917116
1933+a, gdbSNP:200884733
1993+dbSNP:
1993+a, gdbSNP:182619972
1995+a, gdbSNP:150665564
2059+c, tdbSNP:11551151
2089+dbSNP:
2089+a, gdbSNP:138911533
2151+c, tdbSNP:112102343
2163+c, tdbSNP:200978989
2193+dbSNP:
2193+c, tdbSNP:200977401
2262+c, tdbSNP:187986081
2284+c, gdbSNP:79693964
2288+a, cdbSNP:200120271
2292+a, gdbSNP:201100351
2402+dbSNP:
2402+a, gdbSNP:200347455
2499+dbSNP:
2499+a, gdbSNP:139770717
2534+c, tdbSNP:143128508
2568+dbSNP:
2568+g, tdbSNP:137940243
2580+a, gdbSNP:189725339
2592+c, tdbSNP:146185615
2868+dbSNP:
2868+c, tdbSNP:200535931
2877+c, tdbSNP:139148914
2915+c, tdbSNP:142585482
2928+c, tdbSNP:150979807
2955+dbSNP:
2955+c, tdbSNP:139585263
3049+a, gdbSNP:112560260
3063+dbSNP:
3063+c, tdbSNP:149725208
3090+c, gdbSNP:147841841
3098+a, gdbSNP:190398066
3148+c, tdbSNP:202039165
3231+g, tdbSNP:200521605
3262+c, gdbSNP:181900691
3270+a, cdbSNP:41303207
Gene SymbolRBM10
Gene SynonymDXS8237E; GPATC9; GPATCH9; S1-1; TARPS; ZRANB5
ChromosomeX
Locus MapXp11.23
All Transcripts
RefSeq Accession Definition Sequence Price Select
NM_001204466 Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 3, mRNA. Full Length $1113.35
ORF Sequence $742.98
NM_001204467 Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 4, mRNA. Full Length $1193.15
ORF Sequence $809.10
NM_001204468 Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 5, mRNA. Full Length $1205.05
ORF Sequence $866.52
NM_005676 Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 1, mRNA. Full Length $1194.20
ORF Sequence $809.97
NM_152856 Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 2, mRNA. Full Length $1112.30
ORF Sequence $742.11
Title Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate .
Author Johnston,J.J., Teer,J.K., Cherukuri,P.F., Hansen,N.F., Loftus,S.K., Chong,K., Mullikin,J.C. and Biesecker,L.G.
Journal Am. J. Hum. Genet. 86 (5), 743-748 (2010)
Title S1-1 nuclear domains: characterization and dynamics as a function of transcriptional activity .
Author Inoue,A., Tsugawa,K., Tokunaga,K., Takahashi,K.P., Uni,S., Kimura,M., Nishio,K., Yamamoto,N., Honda,K., Watanabe,T., Yamane,H. and Tani,T.
Journal Biol. Cell 100 (9), 523-535 (2008)
Title The small variant of the apoptosis-associated X-chromosome RBM10 gene is co-expressed with caspase-3 in breast cancer .
Author Martin-Garabato,E., Martinez-Arribas,F., Pollan,M., Lucas,A.R., Sanchez,J. and Schneider,J.
Journal Cancer Genomics Proteomics 5 (3-4), 169-173 (2008)
Title Positive correlation between the expression of X-chromosome RBM genes (RBMX, RBM3, RBM10) and the proapoptotic Bax gene in human breast cancer .
Author Martinez-Arribas,F., Agudo,D., Pollan,M., Gomez-Esquer,F., Diaz-Gil,G., Lucas,R. and Schneider,J.
Journal J. Cell. Biochem. 97 (6), 1275-1282 (2006)
Title An integrated, functionally annotated gene map of the DXS8026-ELK1 interval on human Xp11.3-Xp11.23: potential hotspot for neurogenetic disorders .
Author Thiselton,D.L., McDowall,J., Brandau,O., Ramser,J., d'Esposito,F., Bhattacharya,S.S., Ross,M.T., Hardcastle,A.J. and Meindl,A.
Journal Genomics 79 (4), 560-572 (2002)
Title Molecular cloning of a RNA binding protein, S1-1 .
Author Inoue,A., Takahashi,K.P., Kimura,M., Watanabe,T. and Morisawa,S.
Journal Nucleic Acids Res. 24 (15), 2990-2997 (1996)
Title A novel gene, DXS8237E, lies within 20 kb upstream of UBE1 in Xp11.23 and has a different X inactivation status .
Author Coleman,M.P., Ambrose,H.J., Carrel,L., Nemeth,A.H., Willard,H.F. and Davies,K.E.
Journal Genomics 31 (1), 135-138 (1996)
Title Robin's syndrome. A probably X-linked recessive subvariety exhibiting persistence of left superior vena cava and atrial septal defect .
Author Gorlin,R.J., Cervenka,J., Anderson,R.C., Sauk,J.J. and Bevis,W.D.
Journal Am. J. Dis. Child. 119 (2), 176-178 (1970)

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