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Homo sapiens platelet-derived growth factor receptor, alpha polypeptide (PDGFRA), mRNA.


RefSeq Accession Definition Sequence Price Select
NM_006206 Homo sapiens platelet-derived growth factor receptor, alpha polypeptide (PDGFRA), mRNA. Full Lenth $2958.30
ORF Sequence $1144.50


RefSeq Version NM_006206.4, 172072625
Length 6574 bp
Structure linear
Update Date 24-APR-2011
Organism Homo sapiens (human)
Definition Homo sapiens platelet-derived growth factor receptor, alpha polypeptide (PDGFRA), mRNA.
Product alpha-type platelet-derived growth factor receptor precursor
Comment

Summary: This gene encodes a cell surface tyrosine kinase receptor for members of the platelet-derived growth factor family. These growth factors are mitogens for cells of mesenchymal origin. The identity of the growth factor bound to a receptor monomer determines whether the functional receptor is a homodimer or a heterodimer, composed of both platelet-derived growth factor receptor alpha and beta polypeptides. Studies in knockout mice, where homozygosity is lethal, indicate that the alpha form of the platelet-derived growth factor receptor is particularly important for kidney development since mice heterozygous for the receptor exhibit defective kidney phenotypes. [provided by RefSeq].


Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data.

RefSeq NP_006197.1
CDS 332..3601
Exon (1)1..319
Exon (2)1..319
Exon (3)320..380
Exon (4)381..698
Exon (5)699..959
Exon (6)960..1090
Exon (7)1091..1262
Exon (8)1263..1452
Exon (9)1453..1568
Exon (10)1569..1695
Exon (11)1696..1889
Exon (12)1890..1984
Exon (13)1985..2117
Exon (14)2118..2222
Exon (15)2223..2333
Exon (16)2334..2487
Exon (17)2488..2654
Exon (18)2655..2770
Exon (19)2771..2893
Exon (20)2894..3005
Exon (21)3006..3105
Exon (22)3106..3211
Exon (23)3212..3453
Exon (24)3454..6574
Translation MGTSHPAFLVLGCLLTGLSLILCQLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYP MSEEESSDVEIRNEENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIY VPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHNSEGVVPASYDSRQGFNG TFTVGPYICEATVKGKKFQTIPFNVYALKATSELDLEMEALKTVYKSGETIVVTCAVFNN EVVDLQWTYPGEVKGKGITMLEEIKVPSIKLVYTLTVPEATVKDSGDYECAARQATREVK EMKKVTISVHEKGFIEIKPTFSQLEAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLIENL TEITTDVEKIQEIRYRSKLKLIRAKEEDSGHYTIVAQNEDAVKSYTFELLTQVPSSILDL VDDHHGSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSWTILANNVSNIITEIHSRD RSTVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRSELTVAAAVLVLLVIVII SLIVLVVIWKQKPRYEIRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRVLG SGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNL LGACTKSGPIYIITEYCFYGDLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSY VILSFENNGDYMDMKQADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKN LLSDDNSEGLTLLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLA RDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMM VDSTFYNKIKSGYRMAKPDHATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKK SYEKIHLDFLKSDHPAVARMRVDSDNAYIGVTYKNEEDKLKDWEGGLDEQRLSADSGYII PLPDIDPVPEEEDLGKRNRHSSQTSEESAIETGSSSSTFIKREDETIEDIDMMDDIGIDS SDLVEDSFL
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Position Chain Variation Link
162+c, tdbSNP:115411485
226..227+, agdbSNP:113739379
227..228+, gadbSNP:1799767
228+, ag, gadbSNP:1800998
230+, gdbSNP:55732350
532+c, tdbSNP:35805947
542+, adbSNP:67744156
558+, adbSNP:66500524
567+a, gdbSNP:36035373
582..583+, gdbSNP:67750107
604+a, gdbSNP:112372833
721..722+, cdbSNP:67545113
751+a, gdbSNP:112117596
943+c, tdbSNP:2229307
952+, tdbSNP:67343603
1093+a, gdbSNP:113498710
1132+a, gdbSNP:55966236
1141+, adbSNP:67558150
1214+, gdbSNP:66482249
1270+g, tdbSNP:4358459
1350+a, gdbSNP:77524207
1368+g, tdbSNP:78608730
1453+c, gdbSNP:61735622
1458+a, gdbSNP:41279521
1608+a, gdbSNP:55865821
1611+c, tdbSNP:61735621
1613+, adbSNP:67079911
1651+a, gdbSNP:56026726
1763+c, tdbSNP:35597368
1975+c, tdbSNP:115085731
1995+a, gdbSNP:121908589
2013+a, tdbSNP:121908586
2027..2044+agcccagatggacatgaa, cgcdbSNP:121913271
2028..2042+, gcccagatggacatgdbSNP:121913270
complement(2032)-t, cdbSNP:1873778
2062+a, gdbSNP:55830582
2132..2133+, gdbSNP:67896674
2140+a, c, gdbSNP:10028020
2352+c, tdbSNP:121908587
2403..2404+, gdbSNP:66793306
2561+c, tdbSNP:61735626
2621+c, tdbSNP:34392012
2626+a, gdbSNP:112489310
2634+a, gdbSNP:61735625
2781+a, gdbSNP:79948560
2803+c, tdbSNP:2228230
2852..2857+, agagacdbSNP:121913269
2855..2867+a, gacatcatgcatgdbSNP:121913259
2855..2866+, gacatcatgcatdbSNP:121913261
2855..2863+, gacatcatgdbSNP:121913262
2855..2856+at, gadbSNP:121913264
2855+g, tdbSNP:121913265
2856..2869+acatcatgcatgat, gadbSNP:121913258
2856..2865+acatcatgca, tdbSNP:121913260
2856+a, tdbSNP:121908585
2857..2872+catcatgcatgattcg, ggccdbSNP:121913263
2857..2869+catcatgcatgat, gdbSNP:121913257
2858..2869+, atcatgcatgatdbSNP:121913267
2859..2870+, tcatgcatgattdbSNP:121913268
2865..2874+atgattcgaa, cdbSNP:121913266
2867+g, tdbSNP:121908588
2936..2937+, tdbSNP:66606083
3065..3066+, gdbSNP:67676009
3073+c, gdbSNP:56384252
3134+a, gdbSNP:111766115
3344+a, gdbSNP:56028238
3487+a, gdbSNP:55996208
3553+c, tdbSNP:7685117
3640+c, tdbSNP:55681376
3653+, tdbSNP:67546930
3679+a, c, gdbSNP:7680422
3736..3737+, gdbSNP:35265085
3975+a, cdbSNP:3690
4012+a, cdbSNP:75883211
4014..4015+, gdbSNP:34143750
4080+a, cdbSNP:117886200
4138+a, gdbSNP:115470852
4165+, adbSNP:55684881
4292+a, gdbSNP:117287047
4433+c, tdbSNP:12511976
4655..4656+, gdbSNP:36157360
4696+a, gdbSNP:114498728
4697+, tttdbSNP:34529347
4701+, tdbSNP:72136521
4703+, tdbSNP:72043169
4704+, tdbSNP:72323696
4712+, ttt, ttttdbSNP:71200382
4738+a, gdbSNP:55710909
4766+a, cdbSNP:80118193
5030+c, tdbSNP:56288633
complement(5112)-t, gdbSNP:1565664
5344+c, tdbSNP:74548029
5379+a, cdbSNP:75619598
5702+c, tdbSNP:56012257
5988+g, tdbSNP:10034498
6066+a, gdbSNP:78148538
6139+a, gdbSNP:114743065
6147+a, gdbSNP:112690644
Gene SymbolPDGFRA
Gene SynonymCD140A; MGC74795; PDGFR2; RHEPDGFRA
Chromosome4
Locus Map4q12
All Transcripts NM_006206
Title Potential role of imatinib mesylate (Gleevec, STI-571) in the treatment of vestibular schwannoma .
Author Altuna,X., Lopez,J.P., Yu,M.A., Arandazi,M.J., Harris,J.P., Wang-Rodriguez,J., An,Y., Dobrow,R., Doherty,J.K. and Ongkeko,W.M.
Journal Otol. Neurotol. 32 (1), 163-170 (2011)
Title Expression of platelet-derived growth factor-alpha receptor in human osteosarcoma is not a predictor of outcome .
Author Sulzbacher,I., Birner,P., Dominkus,M., Pichlhofer,B. and Mazal,P.R.
Journal Pathology 42 (7), 664-668 (2010)
Title NG2+ CNS glial progenitors remain committed to the oligodendrocyte lineage in postnatal life and following neurodegeneration .
Author Kang,S.H., Fukaya,M., Yang,J.K., Rothstein,J.D. and Bergles,D.E.
Journal Neuron 68 (4), 668-681 (2010)
Title PDGFRA gene rearrangements are frequent genetic events in PDGFRA-amplified glioblastomas .
Author Ozawa,T., Brennan,C.W., Wang,L., Squatrito,M., Sasayama,T., Nakada,M., Huse,J.T., Pedraza,A., Utsuki,S., Yasui,Y., Tandon,A., Fomchenko,E.I., Oka,H., Levine,R.L., Fujii,K., Ladanyi,M. and Holland,E.C.
Journal Genes Dev. 24 (19), 2205-2218 (2010)
Title Fluorescence in situ hybridization analysis and immunophenotyping of c-Kit/PDGFRA and Bcl-2 expression in gastrointestinal stromal tumors .
Author Orsenigo,M., Brich,S., Riva,C., Conca,E., Bertulli,R., Dileo,P., Gronchi,A., Casali,P.G., Pierotti,M.A., Tamborini,E. and Pilotti,S.
Journal Anal. Quant. Cytol. Histol. 32 (4), 225-233 (2010)
Title Ligand-induced interaction between alpha- and beta-type platelet-derived growth factor (PDGF) receptors: role of receptor heterodimers in kinase activation .
Author Kanakaraj,P., Raj,S., Khan,S.A. and Bishayee,S.
Journal Biochemistry 30 (7), 1761-1767 (1991)
Title Chromosomal localization of the gene for AA-type platelet-derived growth factor receptor (PDGFRA) in humans and mice .
Author Hsieh,C.L., Navankasattusas,S., Escobedo,J.A., Williams,L.T. and Francke,U.
Journal Cytogenet. Cell Genet. 56 (3-4), 160-163 (1991)
Title Platelet-derived growth factor receptor: current views of the two-subunit model .
Author Hart,C.E. and Bowen-Pope,D.F.
Journal J. Invest. Dermatol. 94 (6 SUPPL), 53S-57S (1990)
Title An efficient directional cloning system to construct cDNA libraries containing full-length inserts at high frequency .
Author Miki,T., Matsui,T., Heidaran,M.A. and Aaronson,S.A.
Journal Gene 83 (1), 137-146 (1989)
Title Isolation of a novel receptor cDNA establishes the existence of two .
Author Matsui,T., Heidaran,M., Miki,T., Popescu,N., La Rochelle,W., Kraus,M., Pierce,J. and Aaronson,S.
Journal Science 243 (4892), 800-804 (1989)

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