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USH1C Usher syndrome 1C [Homo sapiens (human)]

Gene Symbol USH1C
Entrez Gene ID 10083
Full Name Usher syndrome 1C
Synonyms AIE-75, DFNB18, DFNB18A, NY-CO-37, NY-CO-38, PDZ-45, PDZ-73, PDZ-73/NY-CO-38, PDZ73, PDZD7C, ush1cpst
General protein information
Preferred Names
harmonin
Names
harmonin
antigen NY-CO-38/NY-CO-37
usher syndrome type-1C protein
renal carcinoma antigen NY-REN-3
autoimmune enteropathy-related antigen AIE-75
Gene Type protein-coding
Organism Homo sapiens (human)
Genome

11

11p14.3

Summary This gene encodes a scaffold protein that functions in the assembly of Usher protein complexes. The protein contains PDZ domains, a coiled-coil region with a bipartite nuclear localization signal and a PEST degradation sequence. Defects in this gene are the cause of Usher syndrome type 1C and non-syndromic sensorineural deafness autosomal recessive type 18. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2009]. lac of sum
Disorder MIM:

605242

Disorder Html: Usher syndrome, type 1C, 276904 (3); Deafness, autosomal recessive





The following USH1C gene sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the USH1C gene which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

CloneID RefSeq Accession Definition **Vector *Turnaround time Price Select
OHu63681 XM_011519831 PREDICTED: Homo sapiens Usher syndrome 1C (autosomal recessive, severe) (USH1C), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 12-14 Quote Price
OHu63682 XM_011519832 PREDICTED: Homo sapiens Usher syndrome 1C (autosomal recessive, severe) (USH1C), transcript variant X2, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $439
OHu63683 XM_011519833 PREDICTED: Homo sapiens Usher syndrome 1C (autosomal recessive, severe) (USH1C), transcript variant X3, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $319
OHu63684 XM_011519834 PREDICTED: Homo sapiens Usher syndrome 1C (autosomal recessive, severe) (USH1C), transcript variant X4, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $319
OHu44735 NM_001297764 Homo sapiens Usher syndrome 1C (USH1C), transcript variant 3, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $439
OHu21746 NM_153676 Homo sapiens Usher syndrome 1C (USH1C), transcript variant b3, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 12-14 Quote Price
OHu20937 NM_005709 Homo sapiens Usher syndrome 1C (USH1C), transcript variant 1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $439

*Business Day
**You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.


CloneID OHu63681
Accession Version XM_011519831.1 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 2583bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector Document: User manual_GenEZ ORF Clone Products.pdf (pdf)
Clone information Clone Map
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags Document: MSDS_GenEZ ORF Clone Products.pdf (pdf)
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product harmonin isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_009237.19) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG CTGTAAATGT GCTGAAGAGT
AGCCGCAGCC TGACCATCTC CATTGTAGCT GCAGCTGGCC GGGAGCTGTT CATGACAGAC
CGGGAGCGGC TGGCAGAGGC GCGGCAGCGT GAGCTGCAGC GGCAGGAGCT TCTCATGCAG
AAGCGGCTGG CGATGGAGTC CAACAAGATC CTCCAGGAGC AGCAGGAGAT GGAGCGGCAA
AGGAGAAAAG AAATTGCCCA GAAGGCAGCA GAGGAAAATG AGAGATACCG GAAGGAGATG
GAACAGATTG TAGAGGAGGA AGAGAAGTTT AAGAAGCAAT GGGAAGAAGA CTGGGGCTCA
AAGGAACAGC TACTCTTGCC TAAAACCATC ACTGCTGAGG TACACCCAGT ACCCCTTCGC
AAGCCAAAGT ATGATCAGGG AGTGGAACCT GAGCTCGAGC CCGCAGATGA CCTGGATGGA
GGCACGGAGG AGCAGGGAGA GCAGAAAGGA AAAGATAAGA AGAAAGCCAA GTATGGCAGC
CTGCAGGACT TGAGAAAGAA TAAGAAAGAA CTGGAGTTTG AGCAAAAGCT TTACAAAGAG
AAAGAGGAAA TGCTGGAGAA GGAAAAGCAG CTAAAGATCA ACCGGCTGGC CCAGGAGGTG
TCTGAGACAG AGCGGGAAGA CCTTGAAGAA TCGGAAAAGA TTCAATATTG GGTGGAGAGG
CTCTGTCAAA CGCGCCTCGA GCAGATTTCC TCTGCTGATA ATGAGATTTC AGAGATGACC
ACAGGGCCCC CGCCTCCCCC GCCTTCTGTG TCTCCCCTGG CCCCACCCTT GAGACGCTTC
GCAGGCGGAC TGCACCTGCA CACCACTGAC CTGGACGACA TCCCTTTGGA CATGTTCTAC
TATCCCCCCA AGACTCCCTC TGCCTTGCCT GTGATGCCCC ACCCTCCACC CTCCAACCCA
CCCCACAAGG TCCCGGCGCC CCCTGTCCTT CCCTTATCTG GCCATGTGAG CGCCTCATCC
TCTCCATGGG TGCAGCGCAC TCCACCCCCC ATTCCCATCC CTCCCCCGCC ATCCGTTCCC
ACCCAAGACC TCACTCCCAC CCGCCCACTG CCCTCGGCGC TGGAAGAAGC ACTGAGCAAC
CATCCCTTCC GCACTGGGGA CACAGGCAAT CCAGTGGAGG ACTGGGAGGC AAAGAACCAC
AGTGGGAAGC CCACTAACTC CCCTGTCCCT GAACAGAGCT TCCCACCCAC CCCAAAGACA
TTTTGCCCAA GCCCACAGCC TCCACGAGGC CCTGGCGTGT CCACCATCTC CAAACCTGTC
ATGGTCCACC AGGAGCCCAA TTTCATCTAC AGGCCAGCTG TGAAATCTGA AGTTCTGCCA
CAGGAGATGT TGAAGAGGAT GGTGGTTTAT CAGACAGCAT TCAGACAAGA TTTCCGGAAA
TATGAGGAAG GCTTTGACCC CTACTCTATG TTCACCCCAG AGCAGATCAT GGGGAAGGAT
GTCCGGCTCC TACGCATCAA GAAGGAGGGA TCCTTAGACC TGGCCCTGGA AGGCGGTGTG
GACTCCCCCA TTGGGAAGGT GGTCGTTTCT GCTGTGTATG AGCGGGGAGC TGCTGAGCGG
CATGGTGGCA TTGTGAAAGG GGACGAGATC ATGGCAATCA ACGGCAAGAT TGTGACAGAC
TACACCCTGG CTGAGGCTGA GGCTGCCCTG CAGAAGGCCT GGAATCAGGG CGGGGACTGG
ATCGACCTTG TGGTTGCCGT CTGCCCCCCA AAGGAGTATG ACGATGAGCT GACCTTCTTC
TGA
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeqXP_011518133.1
CDS110..2692
Misc Feature(1)113..349(+)
Misc Feature(2)116..313(+)
Misc Feature(3)362..604(+)
Misc Feature(4)398..574(+)
Misc Feature(5)734..976(+)
Misc Feature(6)770..946(+)
Misc Feature(7)1013..>1258(+)
Misc Feature(8)2384..2647(+)
Misc Feature(9)2420..2602(+)
Translation
Position Chain Variation Link
1 1 a, t dbSNP:556793498
13 13 g, t dbSNP:541115741
16 16 a, t dbSNP:150649483
20 20 a, c dbSNP:539241654
39 39 g, t dbSNP:571065113
50 50 c, t dbSNP:371444878
51 51 c, g dbSNP:773787616
58 58 a, c, g dbSNP:528008701
73 73 c, t dbSNP:779706912
74 74 a, g dbSNP:370904833
78 78 c, g dbSNP:771635424
79 79 g, t dbSNP:374794188
85 85 a, c, g dbSNP:371621268
115 115 c, t dbSNP:753871690
129 129 a, g dbSNP:777396814
133 133 -, a dbSNP:758169847
147 147 c, t dbSNP:757473472
150 150 a, g dbSNP:753946678
157 157 a, g dbSNP:764138582
170 170 g, t dbSNP:181215175
174 174 a, g dbSNP:753180549
175 175 a, g dbSNP:768165881
181 181 a, c dbSNP:759929001
182 182 c, t dbSNP:751983859
183 183 a, g dbSNP:536191185
185 185 c, t dbSNP:267602805
191 191 a, g dbSNP:143192514
196 196 g, t dbSNP:772769969
200 200 c, g, t dbSNP:121908370
201 201 a, g dbSNP:776511246
204 204 c, t dbSNP:376949470
210 210 a, g dbSNP:75157409
214 214 c, g dbSNP:369151395
219 219 c, t dbSNP:531538376
223 223 c, t dbSNP:137962152
224 224 a, g dbSNP:781491502
226 226 g, t dbSNP:755530588
229 229 c, t dbSNP:752165873
230 230 a, g dbSNP:780439529
233 233 c, t dbSNP:545856155
235 235 c, t dbSNP:750823343
236 236 a, g dbSNP:145500807
244 244 a, c, t dbSNP:140319839
251 251 c, g dbSNP:374829758
254 254 c, g dbSNP:146817459
261 261 a, g dbSNP:775363189
269 269 a, c dbSNP:199749712
271 271 c, t dbSNP:767509662
272 272 c, t dbSNP:117171411
275 275 a, c dbSNP:774197490
281 281 -, ct dbSNP:778772895
281 281 c, t dbSNP:200525985
292 292 c, t dbSNP:748443136
293 293 a, g dbSNP:776833569
295 295 c, t dbSNP:200239508
296 296 c, t dbSNP:375741564
297 297 a, g dbSNP:372497947
300 300 c, t dbSNP:758959670
306 306 g, t dbSNP:145040342
310 310 a, c dbSNP:779390547
313 313 g, t dbSNP:140945339
317 317 c, t dbSNP:753527535
323 323 a, g dbSNP:763766845
325 325 a, g dbSNP:151045328
328 328 a, g dbSNP:752212661
334 334 c, t dbSNP:111033279
342 342 a, c dbSNP:759581780
347 347 -, c dbSNP:397515359
347 347 c, t dbSNP:774005703
348 348 a, c, g dbSNP:148597739
351 351 a, g dbSNP:776956839
354 354 c, t dbSNP:769021971
364 364 a, g dbSNP:769870305
373 373 a, c, g dbSNP:397517879
374 374 c, t dbSNP:764346200
375 375 a, g dbSNP:749647539
383 383 c, t dbSNP:775407483
384 384 a, g dbSNP:147954324
385 385 c, t dbSNP:367957451
391 391 a, c, t dbSNP:554615192
394 394 c, g, t dbSNP:374515579
395 395 a, g dbSNP:769420899
403 403 c, t dbSNP:34055234
404 404 a, g, t dbSNP:370054635
406 406 c, t dbSNP:751057721
415 415 a, g dbSNP:779846750
416 416 c, t dbSNP:397517880
417 417 a, g, t dbSNP:397514500
425 425 c, g dbSNP:750240156
429 429 a, c dbSNP:765184158
433 433 c, t dbSNP:549758189
445 445 c, t dbSNP:752923242
450 450 c, t dbSNP:767655370
457 457 c, t dbSNP:531626349
469 469 c, t dbSNP:140869579
470 470 a, c, g dbSNP:377510653
471 471 g, t dbSNP:147383732
475 475 g, t dbSNP:770187704
477 477 c, g dbSNP:748496002
484 484 -, c dbSNP:756032457
487 487 c, t dbSNP:369375384
488 488 a, g dbSNP:768207716
490 490 g, t dbSNP:41282942
497 497 a, g dbSNP:55843567
503 503 g, t dbSNP:751821660
505 505 c, t dbSNP:150522757
506 506 a, g dbSNP:758424766
511 511 c, t dbSNP:750516784
512 512 a, g dbSNP:145013633
514 514 a, c dbSNP:762298047
515 515 c, t dbSNP:368903400
516 516 a, g dbSNP:558663132
517 517 c, g dbSNP:200335331
522 522 a, g dbSNP:761149947
524 524 a, g dbSNP:376786663
528 528 a, c dbSNP:775231512
533 533 a, g dbSNP:771861342
539 539 c, t dbSNP:745306674
540 540 c, t dbSNP:773799306
542 542 c, t dbSNP:770887795
548 548 c, t dbSNP:770952404
549 549 a, g dbSNP:777591673
550 550 a, t dbSNP:769438169
551 551 a, g dbSNP:747960087
560 560 a, g dbSNP:369866148
569 569 a, g dbSNP:780193063
572 572 c, t dbSNP:377145777
573 573 c, g dbSNP:142730611
578 578 a, g dbSNP:778921099
583 583 a, t dbSNP:757763475
589 589 a, g dbSNP:201812681
598 598 a, g dbSNP:764681078
605 605 c, t dbSNP:367996370
622 622 c, g, t dbSNP:199739341
623 623 a, g dbSNP:748703138
634 634 c, t dbSNP:539851299
641 641 a, g dbSNP:755514689
647 647 c, g dbSNP:747331051
649 649 c, t dbSNP:145510974
660 660 a, c, g dbSNP:113015650
671 671 g, t dbSNP:750134316
674 674 -, g dbSNP:751637626
678 678 c, t dbSNP:200319849
679 679 a, g dbSNP:756709989
688 688 a, g dbSNP:753347445
691 691 c, t dbSNP:397517882
692 692 a, g dbSNP:760703501
696 696 a, g dbSNP:397517883
698 698 a, g dbSNP:772472743
699 699 a, g dbSNP:576809888
699 699 -, g dbSNP:764360108
701 701 a, t dbSNP:141771249
707 707 a, g dbSNP:770543827
708 708 -, g dbSNP:763179932
709 709 c, t dbSNP:748975874
713 713 c, t dbSNP:145568338
723 723 a, g dbSNP:777321803
737 737 a, t dbSNP:755601799
738 738 a, c dbSNP:372789934
742 742 g, t dbSNP:781118419
756 756 -, acca dbSNP:753010430
757 757 -, ggt dbSNP:765598399
757 757 a, g dbSNP:77137413
759 759 a, t dbSNP:751387157
760 760 a, g dbSNP:75977878
767 767 c, t dbSNP:766327614
768 768 a, c, g dbSNP:754055631
772 772 c, t dbSNP:764247168
778 778 a, c dbSNP:144761543
793 793 c, t dbSNP:149172005
794 794 g, t dbSNP:759639970
795 795 a, g dbSNP:200523032
822 822 c, t dbSNP:774790511
839 839 a, g dbSNP:766885290
854 854 a, c, g dbSNP:181762689
861 861 a, g dbSNP:773514992
869 869 a, c dbSNP:543985400
884 884 g, t dbSNP:775210992
885 885 g, t dbSNP:772108970
886 886 c, t dbSNP:745828958
887 887 a, g dbSNP:369461618
889 889 a, g dbSNP:770579089
890 890 a, g dbSNP:749119650
892 892 a, c dbSNP:781322765
898 898 c, g, t dbSNP:376197674
899 899 a, g dbSNP:79875849
901 901 a, c, t dbSNP:750856849
902 902 a, g dbSNP:199537187
907 907 c, t dbSNP:762028402
917 917 g, t dbSNP:754263265
928 928 a, g dbSNP:754746834
931 931 a, t dbSNP:769539248
940 940 a, g dbSNP:747960138
947 947 a, g dbSNP:775519842
950 950 a, c dbSNP:112891356
953 953 c, t dbSNP:145245642
954 954 a, g dbSNP:779111365
955 955 c, t dbSNP:757670837
957 957 g, t dbSNP:749768019
960 960 a, c, t dbSNP:756485601
964 964 c, t dbSNP:753114474
969 969 c, t dbSNP:767070713
973 973 g, t dbSNP:754717329
978 978 c, t dbSNP:751010133
979 979 a, t dbSNP:765955209
984 984 c, g dbSNP:200322793
985 985 c, t dbSNP:773086388
989 989 c, t dbSNP:555152976
990 990 a, g dbSNP:773481791
992 992 a, g dbSNP:200127622
996 996 c, t dbSNP:771375713
998 998 c, t dbSNP:748728168
1010 1010 a, c, t dbSNP:574790229
1011 1011 a, g dbSNP:556221893
1015 1015 a, g dbSNP:779617355
1016 1016 c, t dbSNP:749821587
1017 1017 a, g dbSNP:397517884
1029 1029 c, t dbSNP:749924388
1030 1030 a, g dbSNP:778447994
1031 1031 c, g, t dbSNP:753755365
1032 1032 a, g dbSNP:763948115
1037 1037 c, t dbSNP:760448018
1038 1038 a, g dbSNP:752499487
1047 1047 a, c dbSNP:766692857
1048 1048 g, t dbSNP:763313646
1049 1049 c, t dbSNP:773393925
1050 1050 a, g dbSNP:769953534
1054 1054 g, t dbSNP:761821724
1055 1055 c, g dbSNP:35336155
1056 1056 a, g dbSNP:769049771
1064 1064 a, t dbSNP:747397802
1065 1065 g, t dbSNP:775894565
1069 1069 c, g dbSNP:41282934
1073 1073 a, c, t dbSNP:778554644
1074 1074 a, g dbSNP:140424216
1075 1075 c, g dbSNP:748749433
1080 1080 a, c, t dbSNP:756062744
1081 1081 a, g dbSNP:752517458
1097 1097 a, g dbSNP:767460132
1100 1100 c, g dbSNP:754851671
1124 1124 c, t dbSNP:200837155
1125 1125 a, g dbSNP:765571023
1126 1126 g, t dbSNP:761886944
1127 1127 a, c dbSNP:776644722
1130 1130 a, g dbSNP:567436989
1134 1134 a, g dbSNP:759887115
1146 1146 a, c dbSNP:774753537
1148 1148 c, g, t dbSNP:762551629
1149 1149 a, g dbSNP:144896074
1153 1153 c, g dbSNP:769136040
1159 1159 a, t dbSNP:747674867
1165 1165 a, g dbSNP:781209695
1170 1170 a, g dbSNP:768782484
1173 1173 g, t dbSNP:746789590
1178 1178 a, c, g, t dbSNP:140934960
1187 1187 a, g, t dbSNP:756115246
1190 1190 a, g dbSNP:752837878
1195 1195 a, g dbSNP:147727890
1197 1197 c, t dbSNP:750856477
1210 1210 a, g dbSNP:764975771
1225 1225 a, g dbSNP:367623689
1229 1229 a, c, t dbSNP:374699745
1232 1232 c, g dbSNP:372333441
1236 1236 a, t dbSNP:760259812
1242 1242 a, g dbSNP:550843060
1245 1245 a, g dbSNP:202174251
1252 1252 a, g dbSNP:745649293
1277 1277 a, g dbSNP:374410443
1292 1292 c, t dbSNP:769984840
1293 1293 a, c dbSNP:748321973
1296 1296 c, t dbSNP:781424965
1297 1297 a, c, g, t dbSNP:2240487
1300 1300 a, c dbSNP:747125926
1304 1304 c, t dbSNP:267602804
1306 1306 a, t dbSNP:780412282
1307 1307 c, t dbSNP:759009035
1308 1308 a, g dbSNP:750721690
1309 1309 a, c dbSNP:765743810
1315 1315 a, g dbSNP:757715642
1324 1324 g, t dbSNP:148649303
1326 1326 a, t dbSNP:758807447
1329 1329 a, c, g dbSNP:143923730
1334 1334 a, g dbSNP:757625535
1336 1336 a, g dbSNP:754264953
1337 1337 c, t dbSNP:763837481
1345 1345 c, t dbSNP:755834769
1346 1346 a, g dbSNP:752129544
1350 1350 a, c dbSNP:767006857
1351 1351 c, t dbSNP:759001163
1352 1352 a, g dbSNP:116996553
1354 1354 a, t dbSNP:766318556
1358 1358 a, g dbSNP:762723760
1367 1367 a, g dbSNP:546512220
1370 1370 a, g dbSNP:115931035
1374 1374 c, t dbSNP:761005701
1375 1375 a, g dbSNP:35188020
1391 1391 c, t dbSNP:772148994
1392 1392 a, g dbSNP:746527367
1406 1406 a, g dbSNP:200949150
1408 1408 c, g dbSNP:765744352
1424 1424 a, g dbSNP:762275508
1425 1425 g, t dbSNP:751388655
1429 1429 a, c, g dbSNP:765926850
1438 1438 c, t dbSNP:747376943
1440 1440 a, t dbSNP:775062429
1443 1443 -, a dbSNP:34691468
1456 1456 a, g dbSNP:138746314
1470 1470 a, g dbSNP:745374467
1472 1472 c, g dbSNP:150152682
1486 1486 a, g dbSNP:756818011
1487 1487 a, g dbSNP:749144834
1489 1489 a, g dbSNP:185939122
1494 1494 -, ag dbSNP:779732019
1495 1495 a, g dbSNP:141729602
1496 1496 g, t dbSNP:148115969
1501 1501 a, g dbSNP:755916304
1504 1504 a, g dbSNP:752599433
1515 1515 a, g dbSNP:780420127
1516 1516 a, g dbSNP:143683502
1519 1519 a, g dbSNP:141564204
1525 1525 a, g dbSNP:765181298
1530 1530 a, t dbSNP:761982615
1532 1532 c, t dbSNP:138996642
1533 1533 a, g dbSNP:376038772
1534 1534 g, t dbSNP:764595133
1536 1536 c, t dbSNP:761011557
1547 1547 -, g dbSNP:745622612
1549 1549 g, t dbSNP:140982836
1552 1552 c, t dbSNP:772889885
1558 1558 a, g dbSNP:147246373
1562 1562 c, g, t dbSNP:368639867
1563 1563 a, g dbSNP:146333270
1565 1565 c, g dbSNP:746833070
1573 1573 c, t dbSNP:778986415
1582 1582 a, g dbSNP:142669563
1585 1585 a, c dbSNP:749330657
1590 1590 c, g, t dbSNP:756221230
1591 1591 -, tc dbSNP:757175415
1591 1591 c, t dbSNP:147743437
1599 1599 g, t dbSNP:768084753
1604 1604 a, g dbSNP:755287655
1605 1605 a, g dbSNP:752030009
1609 1609 g, t dbSNP:765918184
1620 1620 c, g, t dbSNP:150038913
1622 1622 c, t dbSNP:764799830
1623 1623 a, g, t dbSNP:776650177
1624 1624 a, c, g dbSNP:746772980
1627 1627 c, t dbSNP:775392622
1628 1628 a, c, g dbSNP:372038696
1636 1636 a, t dbSNP:777979693
1642 1642 c, t dbSNP:370705094
1643 1643 a, g dbSNP:756133492
1646 1646 a, g dbSNP:748288785
1655 1655 a, t dbSNP:781549946
1666 1666 a, g dbSNP:781381559
1677 1677 -, acc dbSNP:747107034
1678 1678 c, t dbSNP:768643047
1680 1680 c, t dbSNP:201870537
1681 1681 a, g dbSNP:780428813
1682 1682 a, c dbSNP:562863263
1683 1683 c, t dbSNP:373157800
1688 1688 c, t dbSNP:750875649
1689 1689 c, t dbSNP:778703128
1693 1693 -, cccccgcct dbSNP:777764626
1693 1693 c, t dbSNP:757006603
1697 1697 a, g dbSNP:753261867
1699 1699 a, c, g dbSNP:543567711
1701 1701 c, t dbSNP:760131817
1703 1703 a, c, t dbSNP:576189967
1707 1707 c, t dbSNP:727504790
1709 1709 a, g dbSNP:727503711
1724 1724 c, t dbSNP:140528164
1725 1725 a, g dbSNP:368244741
1729 1729 c, t dbSNP:769982878
1730 1730 a, g dbSNP:201104489
1733 1733 a, g dbSNP:375568824
1735 1735 c, t dbSNP:201945610
1736 1736 a, g dbSNP:201364621
1738 1738 a, g dbSNP:150963440
1741 1741 a, g dbSNP:772771714
1752 1752 c, t dbSNP:746200972
1765 1765 a, c, t dbSNP:142545736
1766 1766 a, c, g dbSNP:568121291
1783 1783 c, g dbSNP:755638927
1785 1785 c, t dbSNP:752219801
1787 1787 -, tactatc dbSNP:758580540
1789 1789 c, t dbSNP:767414753
1795 1795 c, g dbSNP:759519331
1797 1797 a, c, g dbSNP:766124113
1798 1798 a, c, g dbSNP:776853133
1802 1802 a, c dbSNP:768816943
1803 1803 c, g dbSNP:760804450
1809 1809 c, t dbSNP:775751358
1811 1811 c, g dbSNP:367952604
1815 1815 g, t dbSNP:746323859
1820 1820 a, g dbSNP:371282686
1824 1824 c, t dbSNP:376783946
1827 1827 c, t dbSNP:749676328
1828 1828 a, c dbSNP:777479559
1832 1832 c, g dbSNP:549628785
1833 1833 a, c dbSNP:755766185
1836 1836 c, t dbSNP:747675437
1838 1838 -, ccctcca dbSNP:752915195
1843 1843 c, t dbSNP:780632464
1846 1846 c, t dbSNP:754514238
1853 1853 a, c dbSNP:751432782
1858 1858 a, g dbSNP:538411041
1863 1863 c, t dbSNP:758196888
1864 1864 a, g dbSNP:199572804
1866 1866 c, t dbSNP:764344754
1868 1868 c, t dbSNP:760852368
1873 1873 c, t dbSNP:200085788
1876 1876 c, g dbSNP:767662488
1881 1881 c, t dbSNP:759689644
1887 1887 c, t dbSNP:774988386
1892 1892 c, t dbSNP:771410749
1893 1893 a, t dbSNP:749637571
1900 1900 c, g, t dbSNP:770217616
1901 1901 a, g dbSNP:369255684
1902 1902 c, t dbSNP:780828648
1903 1903 a, c, g, t dbSNP:17776775
1906 1906 a, g dbSNP:746578305
1907 1907 c, t dbSNP:780034044
1914 1914 c, t dbSNP:758308462
1915 1915 a, g dbSNP:750209837
1920 1920 g, t dbSNP:764888413
1925 1925 a, c, t dbSNP:111033520
1926 1926 a, g dbSNP:767863235
1931 1931 c, g dbSNP:759687458
1934 1934 a, c, t dbSNP:727503710
1939 1939 -, c dbSNP:765346539
1939 1939 c, g dbSNP:763323363
1940 1940 a, g dbSNP:372662731
1946 1946 a, c dbSNP:773799825
1948 1948 c, g dbSNP:527936366
1950 1950 c, t dbSNP:762180865
1952 1952 a, c, t dbSNP:768363505
1953 1953 c, t dbSNP:746490435
1955 1955 c, t dbSNP:727505247
1956 1956 c, g, t dbSNP:41282932
1957 1957 a, c, g dbSNP:201101932
1960 1960 a, c dbSNP:753754926
1963 1963 c, g, t dbSNP:755304439
1964 1964 a, g, t dbSNP:560416690
1966 1966 g, t dbSNP:375010180
1971 1971 c, g, t dbSNP:146191588
1972 1972 a, c dbSNP:762158679
1979 1979 c, t dbSNP:777018970
1991 1991 c, t dbSNP:143160805
1992 1992 a, g, t dbSNP:139996942
1997 1997 c, t dbSNP:370272370
2001 2001 c, t dbSNP:745392903
2004 2004 c, t dbSNP:778700091
2005 2005 a, c, g, t dbSNP:80124409
2007 2007 c, t dbSNP:727505187
2008 2008 a, g, t dbSNP:756008323
2009 2009 c, t dbSNP:751665437
2013 2013 a, g dbSNP:199812342
2022 2022 c, t dbSNP:377002861
2028 2028 a, g dbSNP:750585000
2032 2032 c, t dbSNP:576183991
2039 2039 c, t dbSNP:149510892
2040 2040 a, g dbSNP:138017852
2043 2043 a, c dbSNP:754365594
2044 2044 c, t dbSNP:200193937
2047 2047 a, g dbSNP:375443476
2051 2051 a, g dbSNP:761028001
2055 2055 g, t dbSNP:774944818
2074 2074 a, g dbSNP:767256203
2075 2075 a, g dbSNP:368729447
2079 2079 a, c dbSNP:758940056
2089 2089 -, ca dbSNP:766725582
2089 2089 c, g dbSNP:773963339
2109 2109 c, t dbSNP:267602803
2110 2110 a, c dbSNP:770590316
2119 2119 c, t dbSNP:749202169
2123 2123 c, g dbSNP:773287534
2127 2127 a, g dbSNP:150854703
2130 2130 -, c dbSNP:35926376
2131 2131 c, t dbSNP:748034933
2137 2137 a, c dbSNP:201586291
2142 2142 c, g dbSNP:758684495
2147 2147 a, t dbSNP:746062174
2159 2159 a, g dbSNP:779108272
2161 2161 c, t dbSNP:757265460
2163 2163 c, t dbSNP:749424126
2169 2169 c, t dbSNP:778245852
2172 2172 a, c, t dbSNP:187147906
2174 2174 c, t dbSNP:369369849
2175 2175 a, g dbSNP:754366710
2180 2180 c, t dbSNP:397517873
2185 2185 a, c, g dbSNP:142523327
2186 2186 a, g dbSNP:762549947
2196 2196 a, t dbSNP:749994928
2210 2210 a, g dbSNP:765062366
2222 2222 c, g dbSNP:139116036
2227 2227 a, c dbSNP:776463595
2228 2228 a, c dbSNP:768430319
2233 2233 c, t dbSNP:560066218
2234 2234 a, t dbSNP:774539210
2245 2245 a, g dbSNP:199532754
2248 2248 g, t dbSNP:749332615
2254 2254 a, g dbSNP:777783031
2256 2256 a, c dbSNP:769796981
2257 2257 c, t dbSNP:369021714
2267 2267 a, c dbSNP:778438766
2269 2269 a, g dbSNP:756777467
2282 2282 a, g dbSNP:569714771
2288 2288 a, g dbSNP:764059609
2289 2289 c, t dbSNP:551491679
2291 2291 c, g dbSNP:752664237
2300 2300 c, t dbSNP:146451547
2308 2308 a, g dbSNP:565783252
2309 2309 c, t dbSNP:773470577
2312 2312 a, g dbSNP:142322601
2321 2321 a, t dbSNP:776940763
2324 2324 c, t dbSNP:397517874
2325 2325 a, g dbSNP:371626423
2327 2327 a, g dbSNP:148168494
2332 2332 c, t dbSNP:772773409
2340 2340 a, g dbSNP:746211878
2349 2349 c, g dbSNP:548507585
2353 2353 c, g dbSNP:771347766
2358 2358 c, g, t dbSNP:200182990
2359 2359 g, t dbSNP:769281868
2371 2371 g, t dbSNP:756452832
2373 2373 a, g dbSNP:201600193
2378 2378 a, g dbSNP:767662810
2379 2379 c, t dbSNP:370437884
2386 2386 a, g dbSNP:751998841
2387 2387 c, g dbSNP:766976437
2393 2393 a, c, t dbSNP:143803480
2394 2394 a, g dbSNP:770171347
2398 2398 c, t dbSNP:151251262
2402 2402 c, g, t dbSNP:757163581
2403 2403 a, g dbSNP:753703742
2405 2405 a, g, t dbSNP:145832659
2411 2411 -, aag dbSNP:745722516
2412 2412 a, g dbSNP:143778195
2414 2414 a, g dbSNP:771504780
2417 2417 a, g dbSNP:745758540
2418 2418 a, g dbSNP:774434089
2421 2421 c, t dbSNP:140313023
2428 2428 a, c, g dbSNP:781240730
2430 2430 c, t dbSNP:755278326
2432 2432 g, t dbSNP:747220783
2437 2437 a, g dbSNP:780145485
2441 2441 a, g dbSNP:758479938
2443 2443 c, t dbSNP:375492038
2444 2444 a, c, g dbSNP:727505083
2445 2445 a, g, t dbSNP:763628668
2448 2448 c, t dbSNP:760325149
2450 2450 a, g dbSNP:775036726
2459 2459 -, a dbSNP:758555088
2463 2463 a, g dbSNP:766984429
2468 2468 a, g dbSNP:531977664
2472 2472 c, t dbSNP:570951456
2473 2473 c, t dbSNP:10832796
2474 2474 a, g dbSNP:397517875
2480 2480 g, t dbSNP:34077456
2482 2482 c, t dbSNP:376193347
2491 2491 a, g dbSNP:773014424
2492 2492 c, t dbSNP:374376964
2493 2493 a, g dbSNP:747189986
2495 2495 a, g dbSNP:199729381
2504 2504 a, g dbSNP:772123405
2506 2506 a, g dbSNP:746011575
2507 2507 a, c, t dbSNP:200428926
2508 2508 a, g dbSNP:563952065
2510 2510 c, t dbSNP:372227474
2514 2514 a, g dbSNP:765150738
2524 2524 a, g dbSNP:375973884
2525 2525 a, g dbSNP:566839242
2533 2533 c, t dbSNP:139787873
2534 2534 a, c, g dbSNP:371257969
2538 2538 c, t dbSNP:368663700
2543 2543 a, g dbSNP:150593932
2545 2545 a, g dbSNP:561818919
2549 2549 a, g dbSNP:770253708
2551 2551 c, t dbSNP:397517876
2552 2552 a, g dbSNP:142652588
2553 2553 -, g dbSNP:748171099
2559 2559 c, t dbSNP:755400861
2561 2561 a, g dbSNP:746605553
2569 2569 c, t dbSNP:779914854
2574 2574 a, c dbSNP:397517877
2575 2575 c, g dbSNP:749937177
2576 2576 a, c, t dbSNP:148477093
2590 2590 c, g dbSNP:1064074
2591 2591 a, g dbSNP:397517878
2593 2593 a, t dbSNP:760474010
2595 2595 c, g, t dbSNP:766575368
2599 2599 g, t dbSNP:374464706
2603 2603 a, c dbSNP:763066296
2619 2619 g, t dbSNP:773119803
2620 2620 c, g, t dbSNP:142801489
2621 2621 a, g dbSNP:142751309
2627 2627 g, t dbSNP:770331652
2632 2632 a, c, t dbSNP:34581703
2633 2633 a, g dbSNP:201644053
2635 2635 c, g dbSNP:752664316
2636 2636 c, t dbSNP:780784680
2644 2644 g, t dbSNP:754819409
2648 2648 a, g dbSNP:370178142
2651 2651 c, t dbSNP:765566026
2653 2653 c, t dbSNP:761957144
2655 2655 a, c dbSNP:754015985
2657 2657 c, t dbSNP:761342832
2658 2658 -, c dbSNP:754257195
2658 2658 -, c dbSNP:755095611
2671 2671 c, t dbSNP:143860238
2672 2672 a, g dbSNP:138123405
2673 2673 a, g dbSNP:776066773
2674 2674 -, tga dbSNP:766806981
2694 2694 a, g dbSNP:780519746
2701 2701 a, g dbSNP:758857084
2702 2702 a, g dbSNP:750964020
2703 2703 a, g dbSNP:779265996
2719 2719 c, t dbSNP:757572697
2720 2720 a, g, t dbSNP:148376296
2725 2725 c, g dbSNP:553257705
2738 2738 c, t dbSNP:752303024
2739 2739 c, t dbSNP:767157591
2740 2740 a, g dbSNP:759507268
2745 2745 c, t dbSNP:774444429
2747 2747 c, g dbSNP:770747102
2749 2749 c, t dbSNP:762724785
2750 2750 c, t dbSNP:776883577
2751 2751 a, g dbSNP:376858157
2754 2754 a, t dbSNP:747258230
2755 2755 a, g dbSNP:541020706
2758 2758 c, g dbSNP:772139842
2766 2766 c, t dbSNP:16934270
2767 2767 a, g dbSNP:369486851
2769 2769 a, t dbSNP:555408405
2770 2770 c, t dbSNP:1055574
2771 2771 c, t dbSNP:774990972
2775 2775 a, c dbSNP:755778561
2794 2794 c, t dbSNP:184722933
2801 2801 a, c dbSNP:558040715
2810 2810 a, t dbSNP:540053922
2819 2819 a, c, t dbSNP:552838747
2834 2834 c, g dbSNP:75815445
2841 2841 c, g dbSNP:534567723
2855 2855 c, g dbSNP:550402400
2882 2882 c, g dbSNP:748615881
2884 2884 a, g dbSNP:372995440
2909 2909 a, c dbSNP:147350505
2910 2910 c, t dbSNP:1055577
2935 2935 a, g dbSNP:1055581
2965 2965 c, g dbSNP:551263680
2982 2982 a, g dbSNP:192348078
2995 2995 g, t dbSNP:559684597
2996 2996 a, g dbSNP:199935553
3015 3015 g, t dbSNP:541282375
3047 3047 -, g dbSNP:36088380
3060 3060 g, t dbSNP:573996111
3063 3063 -, tc dbSNP:544424548
3071 3071 c, g dbSNP:531879073
3081 3081 c, t dbSNP:561636317
3129 3129 c, g dbSNP:11827649
3142 3142 -, aaac, aaca dbSNP:10626485
3142 3142 c, t dbSNP:112987049
3143 3143 -, aaca dbSNP:10649542
3144 3144 a, g dbSNP:149832912
3145 3145 -, aaac, caga dbSNP:148040278
3146 3146 c, t dbSNP:139789806
3147 3147 a, t dbSNP:149306223
3148 3148 g, t dbSNP:200545361

Target ORF information:

RefSeq Version XM_011519831
Organism Homo sapiens (human)
Definition PREDICTED: Homo sapiens Usher syndrome 1C (autosomal recessive, severe) (USH1C), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
XM_011519831

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG CTGTAAATGT GCTGAAGAGT
AGCCGCAGCC TGACCATCTC CATTGTAGCT GCAGCTGGCC GGGAGCTGTT CATGACAGAC
CGGGAGCGGC TGGCAGAGGC GCGGCAGCGT GAGCTGCAGC GGCAGGAGCT TCTCATGCAG
AAGCGGCTGG CGATGGAGTC CAACAAGATC CTCCAGGAGC AGCAGGAGAT GGAGCGGCAA
AGGAGAAAAG AAATTGCCCA GAAGGCAGCA GAGGAAAATG AGAGATACCG GAAGGAGATG
GAACAGATTG TAGAGGAGGA AGAGAAGTTT AAGAAGCAAT GGGAAGAAGA CTGGGGCTCA
AAGGAACAGC TACTCTTGCC TAAAACCATC ACTGCTGAGG TACACCCAGT ACCCCTTCGC
AAGCCAAAGT ATGATCAGGG AGTGGAACCT GAGCTCGAGC CCGCAGATGA CCTGGATGGA
GGCACGGAGG AGCAGGGAGA GCAGAAAGGA AAAGATAAGA AGAAAGCCAA GTATGGCAGC
CTGCAGGACT TGAGAAAGAA TAAGAAAGAA CTGGAGTTTG AGCAAAAGCT TTACAAAGAG
AAAGAGGAAA TGCTGGAGAA GGAAAAGCAG CTAAAGATCA ACCGGCTGGC CCAGGAGGTG
TCTGAGACAG AGCGGGAAGA CCTTGAAGAA TCGGAAAAGA TTCAATATTG GGTGGAGAGG
CTCTGTCAAA CGCGCCTCGA GCAGATTTCC TCTGCTGATA ATGAGATTTC AGAGATGACC
ACAGGGCCCC CGCCTCCCCC GCCTTCTGTG TCTCCCCTGG CCCCACCCTT GAGACGCTTC
GCAGGCGGAC TGCACCTGCA CACCACTGAC CTGGACGACA TCCCTTTGGA CATGTTCTAC
TATCCCCCCA AGACTCCCTC TGCCTTGCCT GTGATGCCCC ACCCTCCACC CTCCAACCCA
CCCCACAAGG TCCCGGCGCC CCCTGTCCTT CCCTTATCTG GCCATGTGAG CGCCTCATCC
TCTCCATGGG TGCAGCGCAC TCCACCCCCC ATTCCCATCC CTCCCCCGCC ATCCGTTCCC
ACCCAAGACC TCACTCCCAC CCGCCCACTG CCCTCGGCGC TGGAAGAAGC ACTGAGCAAC
CATCCCTTCC GCACTGGGGA CACAGGCAAT CCAGTGGAGG ACTGGGAGGC AAAGAACCAC
AGTGGGAAGC CCACTAACTC CCCTGTCCCT GAACAGAGCT TCCCACCCAC CCCAAAGACA
TTTTGCCCAA GCCCACAGCC TCCACGAGGC CCTGGCGTGT CCACCATCTC CAAACCTGTC
ATGGTCCACC AGGAGCCCAA TTTCATCTAC AGGCCAGCTG TGAAATCTGA AGTTCTGCCA
CAGGAGATGT TGAAGAGGAT GGTGGTTTAT CAGACAGCAT TCAGACAAGA TTTCCGGAAA
TATGAGGAAG GCTTTGACCC CTACTCTATG TTCACCCCAG AGCAGATCAT GGGGAAGGAT
GTCCGGCTCC TACGCATCAA GAAGGAGGGA TCCTTAGACC TGGCCCTGGA AGGCGGTGTG
GACTCCCCCA TTGGGAAGGT GGTCGTTTCT GCTGTGTATG AGCGGGGAGC TGCTGAGCGG
CATGGTGGCA TTGTGAAAGG GGACGAGATC ATGGCAATCA ACGGCAAGAT TGTGACAGAC
TACACCCTGG CTGAGGCTGA GGCTGCCCTG CAGAAGGCCT GGAATCAGGG CGGGGACTGG
ATCGACCTTG TGGTTGCCGT CTGCCCCCCA AAGGAGTATG ACGATGAGCT GACCTTCTTC
TGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OHu63682
Accession Version XM_011519832.1 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 1812bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector Document: User manual_GenEZ ORF Clone Products.pdf (pdf)
Clone information Clone Map
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags Document: MSDS_GenEZ ORF Clone Products.pdf (pdf)
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product harmonin isoform X2
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_009237.19) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG CTGTAAATGT GCTGAAGAGT
AGCCGCAGCC TGACCATCTC CATTGTAGCT GCAGCTGGCC GGGAGCTGTT CATGACAGAC
CGGGAGCGGC TGGCAGAGGC GCGGCAGCGT GAGCTGCAGC GGCAGGAGCT TCTCATGCAG
AAGCGGCTGG CGATGGAGTC CAACAAGATC CTCCAGGAGC AGCAGGAGAT GGAGCGGCAA
AGGAGAAAAG AAATTGCCCA GAAGGCAGCA GAGGAAAATG AGAGATACCG GAAGGAGATG
GAACAGATTG TAGAGGAGGA AGAGAAGTTT AAGAAGCAAT GGGAAGAAGA CTGGGGCTCA
AAGGAACAGC TACTCTTGCC TAAAACCATC ACTGCTGAGG TACACCCAGT ACCCCTTCGC
AAGCCAAAGT ATGATCAGGG AGTGGAACCT GAGCTCGAGC CCGCAGATGA CCTGGATGGA
GGCACGGAGG AGCAGGGAGA GCAGAAAGGA AAAGATAAGA AGAAAGCCAA GTATGGCAGC
CTGCAGGACT TGAGAAAGAA TAAGAAAGAA CTGGAGTTTG AGCAAAAGCT TTACAAAGAG
AAAGAGGAAA TGCTGGAGAA GGAAAAGCAG CTAAAGATCA ACCGGCTGGC CCAGGAGGAT
TTCCGGAAAT ATGAGGAAGG CTTTGACCCC TACTCTATGT TCACCCCAGA GCAGATCATG
GGGAAGGATG TCCGGCTCCT ACGCATCAAG AAGGAGGGAT CCTTAGACCT GGCCCTGGAA
GGCGGTGTGG ACTCCCCCAT TGGGAAGGTG GTCGTTTCTG CTGTGTATGA GCGGGGAGCT
GCTGAGCGGC ATGGTGGCAT TGTGAAAGGG GACGAGATCA TGGCAATCAA CGGCAAGATT
GTGACAGACT ACACCCTGGC TGAGGCTGAG GCTGCCCTGC AGAAGGCCTG GAATCAGGGC
GGGGACTGGA TCGACCTTGT GGTTGCCGTC TGCCCCCCAA AGGAGTATGA CGATGAGCTG
ACCTTCTTCT GA
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeqXP_011518134.1
CDS110..1921
Misc Feature(1)113..349(+)
Misc Feature(2)116..313(+)
Misc Feature(3)362..604(+)
Misc Feature(4)398..574(+)
Misc Feature(5)734..976(+)
Misc Feature(6)770..946(+)
Misc Feature(7)1013..>1258(+)
Misc Feature(8)1613..1876(+)
Misc Feature(9)1649..1831(+)
Translation
Position Chain Variation Link
1 1 a, t dbSNP:556793498
13 13 g, t dbSNP:541115741
16 16 a, t dbSNP:150649483
20 20 a, c dbSNP:539241654
39 39 g, t dbSNP:571065113
50 50 c, t dbSNP:371444878
51 51 c, g dbSNP:773787616
58 58 a, c, g dbSNP:528008701
73 73 c, t dbSNP:779706912
74 74 a, g dbSNP:370904833
78 78 c, g dbSNP:771635424
79 79 g, t dbSNP:374794188
85 85 a, c, g dbSNP:371621268
115 115 c, t dbSNP:753871690
129 129 a, g dbSNP:777396814
133 133 -, a dbSNP:758169847
147 147 c, t dbSNP:757473472
150 150 a, g dbSNP:753946678
157 157 a, g dbSNP:764138582
170 170 g, t dbSNP:181215175
174 174 a, g dbSNP:753180549
175 175 a, g dbSNP:768165881
181 181 a, c dbSNP:759929001
182 182 c, t dbSNP:751983859
183 183 a, g dbSNP:536191185
185 185 c, t dbSNP:267602805
191 191 a, g dbSNP:143192514
196 196 g, t dbSNP:772769969
200 200 c, g, t dbSNP:121908370
201 201 a, g dbSNP:776511246
204 204 c, t dbSNP:376949470
210 210 a, g dbSNP:75157409
214 214 c, g dbSNP:369151395
219 219 c, t dbSNP:531538376
223 223 c, t dbSNP:137962152
224 224 a, g dbSNP:781491502
226 226 g, t dbSNP:755530588
229 229 c, t dbSNP:752165873
230 230 a, g dbSNP:780439529
233 233 c, t dbSNP:545856155
235 235 c, t dbSNP:750823343
236 236 a, g dbSNP:145500807
244 244 a, c, t dbSNP:140319839
251 251 c, g dbSNP:374829758
254 254 c, g dbSNP:146817459
261 261 a, g dbSNP:775363189
269 269 a, c dbSNP:199749712
271 271 c, t dbSNP:767509662
272 272 c, t dbSNP:117171411
275 275 a, c dbSNP:774197490
281 281 -, ct dbSNP:778772895
281 281 c, t dbSNP:200525985
292 292 c, t dbSNP:748443136
293 293 a, g dbSNP:776833569
295 295 c, t dbSNP:200239508
296 296 c, t dbSNP:375741564
297 297 a, g dbSNP:372497947
300 300 c, t dbSNP:758959670
306 306 g, t dbSNP:145040342
310 310 a, c dbSNP:779390547
313 313 g, t dbSNP:140945339
317 317 c, t dbSNP:753527535
323 323 a, g dbSNP:763766845
325 325 a, g dbSNP:151045328
328 328 a, g dbSNP:752212661
334 334 c, t dbSNP:111033279
342 342 a, c dbSNP:759581780
347 347 -, c dbSNP:397515359
347 347 c, t dbSNP:774005703
348 348 a, c, g dbSNP:148597739
351 351 a, g dbSNP:776956839
354 354 c, t dbSNP:769021971
364 364 a, g dbSNP:769870305
373 373 a, c, g dbSNP:397517879
374 374 c, t dbSNP:764346200
375 375 a, g dbSNP:749647539
383 383 c, t dbSNP:775407483
384 384 a, g dbSNP:147954324
385 385 c, t dbSNP:367957451
391 391 a, c, t dbSNP:554615192
394 394 c, g, t dbSNP:374515579
395 395 a, g dbSNP:769420899
403 403 c, t dbSNP:34055234
404 404 a, g, t dbSNP:370054635
406 406 c, t dbSNP:751057721
415 415 a, g dbSNP:779846750
416 416 c, t dbSNP:397517880
417 417 a, g, t dbSNP:397514500
425 425 c, g dbSNP:750240156
429 429 a, c dbSNP:765184158
433 433 c, t dbSNP:549758189
445 445 c, t dbSNP:752923242
450 450 c, t dbSNP:767655370
457 457 c, t dbSNP:531626349
469 469 c, t dbSNP:140869579
470 470 a, c, g dbSNP:377510653
471 471 g, t dbSNP:147383732
475 475 g, t dbSNP:770187704
477 477 c, g dbSNP:748496002
484 484 -, c dbSNP:756032457
487 487 c, t dbSNP:369375384
488 488 a, g dbSNP:768207716
490 490 g, t dbSNP:41282942
497 497 a, g dbSNP:55843567
503 503 g, t dbSNP:751821660
505 505 c, t dbSNP:150522757
506 506 a, g dbSNP:758424766
511 511 c, t dbSNP:750516784
512 512 a, g dbSNP:145013633
514 514 a, c dbSNP:762298047
515 515 c, t dbSNP:368903400
516 516 a, g dbSNP:558663132
517 517 c, g dbSNP:200335331
522 522 a, g dbSNP:761149947
524 524 a, g dbSNP:376786663
528 528 a, c dbSNP:775231512
533 533 a, g dbSNP:771861342
539 539 c, t dbSNP:745306674
540 540 c, t dbSNP:773799306
542 542 c, t dbSNP:770887795
548 548 c, t dbSNP:770952404
549 549 a, g dbSNP:777591673
550 550 a, t dbSNP:769438169
551 551 a, g dbSNP:747960087
560 560 a, g dbSNP:369866148
569 569 a, g dbSNP:780193063
572 572 c, t dbSNP:377145777
573 573 c, g dbSNP:142730611
578 578 a, g dbSNP:778921099
583 583 a, t dbSNP:757763475
589 589 a, g dbSNP:201812681
598 598 a, g dbSNP:764681078
605 605 c, t dbSNP:367996370
622 622 c, g, t dbSNP:199739341
623 623 a, g dbSNP:748703138
634 634 c, t dbSNP:539851299
641 641 a, g dbSNP:755514689
647 647 c, g dbSNP:747331051
649 649 c, t dbSNP:145510974
660 660 a, c, g dbSNP:113015650
671 671 g, t dbSNP:750134316
674 674 -, g dbSNP:751637626
678 678 c, t dbSNP:200319849
679 679 a, g dbSNP:756709989
688 688 a, g dbSNP:753347445
691 691 c, t dbSNP:397517882
692 692 a, g dbSNP:760703501
696 696 a, g dbSNP:397517883
698 698 a, g dbSNP:772472743
699 699 a, g dbSNP:576809888
699 699 -, g dbSNP:764360108
701 701 a, t dbSNP:141771249
707 707 a, g dbSNP:770543827
708 708 -, g dbSNP:763179932
709 709 c, t dbSNP:748975874
713 713 c, t dbSNP:145568338
723 723 a, g dbSNP:777321803
737 737 a, t dbSNP:755601799
738 738 a, c dbSNP:372789934
742 742 g, t dbSNP:781118419
756 756 -, acca dbSNP:753010430
757 757 -, ggt dbSNP:765598399
757 757 a, g dbSNP:77137413
759 759 a, t dbSNP:751387157
760 760 a, g dbSNP:75977878
767 767 c, t dbSNP:766327614
768 768 a, c, g dbSNP:754055631
772 772 c, t dbSNP:764247168
778 778 a, c dbSNP:144761543
793 793 c, t dbSNP:149172005
794 794 g, t dbSNP:759639970
795 795 a, g dbSNP:200523032
822 822 c, t dbSNP:774790511
839 839 a, g dbSNP:766885290
854 854 a, c, g dbSNP:181762689
861 861 a, g dbSNP:773514992
869 869 a, c dbSNP:543985400
884 884 g, t dbSNP:775210992
885 885 g, t dbSNP:772108970
886 886 c, t dbSNP:745828958
887 887 a, g dbSNP:369461618
889 889 a, g dbSNP:770579089
890 890 a, g dbSNP:749119650
892 892 a, c dbSNP:781322765
898 898 c, g, t dbSNP:376197674
899 899 a, g dbSNP:79875849
901 901 a, c, t dbSNP:750856849
902 902 a, g dbSNP:199537187
907 907 c, t dbSNP:762028402
917 917 g, t dbSNP:754263265
928 928 a, g dbSNP:754746834
931 931 a, t dbSNP:769539248
940 940 a, g dbSNP:747960138
947 947 a, g dbSNP:775519842
950 950 a, c dbSNP:112891356
953 953 c, t dbSNP:145245642
954 954 a, g dbSNP:779111365
955 955 c, t dbSNP:757670837
957 957 g, t dbSNP:749768019
960 960 a, c, t dbSNP:756485601
964 964 c, t dbSNP:753114474
969 969 c, t dbSNP:767070713
973 973 g, t dbSNP:754717329
978 978 c, t dbSNP:751010133
979 979 a, t dbSNP:765955209
984 984 c, g dbSNP:200322793
985 985 c, t dbSNP:773086388
989 989 c, t dbSNP:555152976
990 990 a, g dbSNP:773481791
992 992 a, g dbSNP:200127622
996 996 c, t dbSNP:771375713
998 998 c, t dbSNP:748728168
1010 1010 a, c, t dbSNP:574790229
1011 1011 a, g dbSNP:556221893
1015 1015 a, g dbSNP:779617355
1016 1016 c, t dbSNP:749821587
1017 1017 a, g dbSNP:397517884
1029 1029 c, t dbSNP:749924388
1030 1030 a, g dbSNP:778447994
1031 1031 c, g, t dbSNP:753755365
1032 1032 a, g dbSNP:763948115
1037 1037 c, t dbSNP:760448018
1038 1038 a, g dbSNP:752499487
1047 1047 a, c dbSNP:766692857
1048 1048 g, t dbSNP:763313646
1049 1049 c, t dbSNP:773393925
1050 1050 a, g dbSNP:769953534
1054 1054 g, t dbSNP:761821724
1055 1055 c, g dbSNP:35336155
1056 1056 a, g dbSNP:769049771
1064 1064 a, t dbSNP:747397802
1065 1065 g, t dbSNP:775894565
1069 1069 c, g dbSNP:41282934
1073 1073 a, c, t dbSNP:778554644
1074 1074 a, g dbSNP:140424216
1075 1075 c, g dbSNP:748749433
1080 1080 a, c, t dbSNP:756062744
1081 1081 a, g dbSNP:752517458
1097 1097 a, g dbSNP:767460132
1100 1100 c, g dbSNP:754851671
1124 1124 c, t dbSNP:200837155
1125 1125 a, g dbSNP:765571023
1126 1126 g, t dbSNP:761886944
1127 1127 a, c dbSNP:776644722
1130 1130 a, g dbSNP:567436989
1134 1134 a, g dbSNP:759887115
1146 1146 a, c dbSNP:774753537
1148 1148 c, g, t dbSNP:762551629
1149 1149 a, g dbSNP:144896074
1153 1153 c, g dbSNP:769136040
1159 1159 a, t dbSNP:747674867
1165 1165 a, g dbSNP:781209695
1170 1170 a, g dbSNP:768782484
1173 1173 g, t dbSNP:746789590
1178 1178 a, c, g, t dbSNP:140934960
1187 1187 a, g, t dbSNP:756115246
1190 1190 a, g dbSNP:752837878
1195 1195 a, g dbSNP:147727890
1197 1197 c, t dbSNP:750856477
1210 1210 a, g dbSNP:764975771
1225 1225 a, g dbSNP:367623689
1229 1229 a, c, t dbSNP:374699745
1232 1232 c, g dbSNP:372333441
1236 1236 a, t dbSNP:760259812
1242 1242 a, g dbSNP:550843060
1245 1245 a, g dbSNP:202174251
1252 1252 a, g dbSNP:745649293
1277 1277 a, g dbSNP:374410443
1292 1292 c, t dbSNP:769984840
1293 1293 a, c dbSNP:748321973
1296 1296 c, t dbSNP:781424965
1297 1297 a, c, g, t dbSNP:2240487
1300 1300 a, c dbSNP:747125926
1304 1304 c, t dbSNP:267602804
1306 1306 a, t dbSNP:780412282
1307 1307 c, t dbSNP:759009035
1308 1308 a, g dbSNP:750721690
1309 1309 a, c dbSNP:765743810
1315 1315 a, g dbSNP:757715642
1324 1324 g, t dbSNP:148649303
1326 1326 a, t dbSNP:758807447
1329 1329 a, c, g dbSNP:143923730
1334 1334 a, g dbSNP:757625535
1336 1336 a, g dbSNP:754264953
1337 1337 c, t dbSNP:763837481
1345 1345 c, t dbSNP:755834769
1346 1346 a, g dbSNP:752129544
1350 1350 a, c dbSNP:767006857
1351 1351 c, t dbSNP:759001163
1352 1352 a, g dbSNP:116996553
1354 1354 a, t dbSNP:766318556
1358 1358 a, g dbSNP:762723760
1367 1367 a, g dbSNP:546512220
1370 1370 a, g dbSNP:115931035
1374 1374 c, t dbSNP:761005701
1375 1375 a, g dbSNP:35188020
1391 1391 c, t dbSNP:772148994
1392 1392 a, g dbSNP:746527367
1406 1406 a, g dbSNP:200949150
1408 1408 c, g dbSNP:765744352
1424 1424 a, g dbSNP:762275508
1425 1425 g, t dbSNP:751388655
1429 1429 a, c, g dbSNP:765926850
1438 1438 c, t dbSNP:747376943
1440 1440 a, t dbSNP:775062429
1443 1443 -, a dbSNP:34691468
1456 1456 a, g dbSNP:138746314
1470 1470 a, g dbSNP:745374467
1472 1472 c, g dbSNP:150152682
1486 1486 a, g dbSNP:756818011
1487 1487 a, g dbSNP:749144834
1489 1489 a, g dbSNP:185939122
1494 1494 -, ag dbSNP:779732019
1495 1495 a, g dbSNP:141729602
1496 1496 g, t dbSNP:148115969
1501 1501 a, g dbSNP:755916304
1504 1504 a, g dbSNP:752599433
1515 1515 a, g dbSNP:780420127
1516 1516 a, g dbSNP:143683502
1519 1519 a, g dbSNP:141564204
1525 1525 a, g dbSNP:765181298
1530 1530 a, t dbSNP:761982615
1532 1532 c, t dbSNP:138996642
1533 1533 a, g dbSNP:376038772
1534 1534 g, t dbSNP:764595133
1536 1536 c, t dbSNP:761011557
1550 1550 a, t dbSNP:776940763
1553 1553 c, t dbSNP:397517874
1554 1554 a, g dbSNP:371626423
1556 1556 a, g dbSNP:148168494
1561 1561 c, t dbSNP:772773409
1569 1569 a, g dbSNP:746211878
1578 1578 c, g dbSNP:548507585
1582 1582 c, g dbSNP:771347766
1587 1587 c, g, t dbSNP:200182990
1588 1588 g, t dbSNP:769281868
1600 1600 g, t dbSNP:756452832
1602 1602 a, g dbSNP:201600193
1607 1607 a, g dbSNP:767662810
1608 1608 c, t dbSNP:370437884
1615 1615 a, g dbSNP:751998841
1616 1616 c, g dbSNP:766976437
1622 1622 a, c, t dbSNP:143803480
1623 1623 a, g dbSNP:770171347
1627 1627 c, t dbSNP:151251262
1631 1631 c, g, t dbSNP:757163581
1632 1632 a, g dbSNP:753703742
1634 1634 a, g, t dbSNP:145832659
1640 1640 -, aag dbSNP:745722516
1641 1641 a, g dbSNP:143778195
1643 1643 a, g dbSNP:771504780
1646 1646 a, g dbSNP:745758540
1647 1647 a, g dbSNP:774434089
1650 1650 c, t dbSNP:140313023
1657 1657 a, c, g dbSNP:781240730
1659 1659 c, t dbSNP:755278326
1661 1661 g, t dbSNP:747220783
1666 1666 a, g dbSNP:780145485
1670 1670 a, g dbSNP:758479938
1672 1672 c, t dbSNP:375492038
1673 1673 a, c, g dbSNP:727505083
1674 1674 a, g, t dbSNP:763628668
1677 1677 c, t dbSNP:760325149
1679 1679 a, g dbSNP:775036726
1688 1688 -, a dbSNP:758555088
1692 1692 a, g dbSNP:766984429
1697 1697 a, g dbSNP:531977664
1701 1701 c, t dbSNP:570951456
1702 1702 c, t dbSNP:10832796
1703 1703 a, g dbSNP:397517875
1709 1709 g, t dbSNP:34077456
1711 1711 c, t dbSNP:376193347
1720 1720 a, g dbSNP:773014424
1721 1721 c, t dbSNP:374376964
1722 1722 a, g dbSNP:747189986
1724 1724 a, g dbSNP:199729381
1733 1733 a, g dbSNP:772123405
1735 1735 a, g dbSNP:746011575
1736 1736 a, c, t dbSNP:200428926
1737 1737 a, g dbSNP:563952065
1739 1739 c, t dbSNP:372227474
1743 1743 a, g dbSNP:765150738
1753 1753 a, g dbSNP:375973884
1754 1754 a, g dbSNP:566839242
1762 1762 c, t dbSNP:139787873
1763 1763 a, c, g dbSNP:371257969
1767 1767 c, t dbSNP:368663700
1772 1772 a, g dbSNP:150593932
1774 1774 a, g dbSNP:561818919
1778 1778 a, g dbSNP:770253708
1780 1780 c, t dbSNP:397517876
1781 1781 a, g dbSNP:142652588
1782 1782 -, g dbSNP:748171099
1788 1788 c, t dbSNP:755400861
1790 1790 a, g dbSNP:746605553
1798 1798 c, t dbSNP:779914854
1803 1803 a, c dbSNP:397517877
1804 1804 c, g dbSNP:749937177
1805 1805 a, c, t dbSNP:148477093
1819 1819 c, g dbSNP:1064074
1820 1820 a, g dbSNP:397517878
1822 1822 a, t dbSNP:760474010
1824 1824 c, g, t dbSNP:766575368
1828 1828 g, t dbSNP:374464706
1832 1832 a, c dbSNP:763066296
1848 1848 g, t dbSNP:773119803
1849 1849 c, g, t dbSNP:142801489
1850 1850 a, g dbSNP:142751309
1856 1856 g, t dbSNP:770331652
1861 1861 a, c, t dbSNP:34581703
1862 1862 a, g dbSNP:201644053
1864 1864 c, g dbSNP:752664316
1865 1865 c, t dbSNP:780784680
1873 1873 g, t dbSNP:754819409
1877 1877 a, g dbSNP:370178142
1880 1880 c, t dbSNP:765566026
1882 1882 c, t dbSNP:761957144
1884 1884 a, c dbSNP:754015985
1886 1886 c, t dbSNP:761342832
1887 1887 -, c dbSNP:754257195
1887 1887 -, c dbSNP:755095611
1900 1900 c, t dbSNP:143860238
1901 1901 a, g dbSNP:138123405
1902 1902 a, g dbSNP:776066773
1903 1903 -, tga dbSNP:766806981
1923 1923 a, g dbSNP:780519746
1930 1930 a, g dbSNP:758857084
1931 1931 a, g dbSNP:750964020
1932 1932 a, g dbSNP:779265996
1948 1948 c, t dbSNP:757572697
1949 1949 a, g, t dbSNP:148376296
1954 1954 c, g dbSNP:553257705
1967 1967 c, t dbSNP:752303024
1968 1968 c, t dbSNP:767157591
1969 1969 a, g dbSNP:759507268
1974 1974 c, t dbSNP:774444429
1976 1976 c, g dbSNP:770747102
1978 1978 c, t dbSNP:762724785
1979 1979 c, t dbSNP:776883577
1980 1980 a, g dbSNP:376858157
1983 1983 a, t dbSNP:747258230
1984 1984 a, g dbSNP:541020706
1987 1987 c, g dbSNP:772139842
1995 1995 c, t dbSNP:16934270
1996 1996 a, g dbSNP:369486851
1998 1998 a, t dbSNP:555408405
1999 1999 c, t dbSNP:1055574
2000 2000 c, t dbSNP:774990972
2004 2004 a, c dbSNP:755778561
2023 2023 c, t dbSNP:184722933
2030 2030 a, c dbSNP:558040715
2039 2039 a, t dbSNP:540053922
2048 2048 a, c, t dbSNP:552838747
2063 2063 c, g dbSNP:75815445
2070 2070 c, g dbSNP:534567723
2084 2084 c, g dbSNP:550402400
2111 2111 c, g dbSNP:748615881
2113 2113 a, g dbSNP:372995440
2138 2138 a, c dbSNP:147350505
2139 2139 c, t dbSNP:1055577
2164 2164 a, g dbSNP:1055581
2194 2194 c, g dbSNP:551263680
2211 2211 a, g dbSNP:192348078
2224 2224 g, t dbSNP:559684597
2225 2225 a, g dbSNP:199935553
2244 2244 g, t dbSNP:541282375
2276 2276 -, g dbSNP:36088380
2289 2289 g, t dbSNP:573996111
2292 2292 -, tc dbSNP:544424548
2300 2300 c, g dbSNP:531879073
2310 2310 c, t dbSNP:561636317
2358 2358 c, g dbSNP:11827649
2371 2371 -, aaac, aaca dbSNP:10626485
2371 2371 c, t dbSNP:112987049
2372 2372 -, aaca dbSNP:10649542
2373 2373 a, g dbSNP:149832912
2374 2374 -, aaac, caga dbSNP:148040278
2375 2375 c, t dbSNP:139789806
2376 2376 a, t dbSNP:149306223
2377 2377 g, t dbSNP:200545361

Target ORF information:

RefSeq Version XM_011519832
Organism Homo sapiens (human)
Definition PREDICTED: Homo sapiens Usher syndrome 1C (autosomal recessive, severe) (USH1C), transcript variant X2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
XM_011519832

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG CTGTAAATGT GCTGAAGAGT
AGCCGCAGCC TGACCATCTC CATTGTAGCT GCAGCTGGCC GGGAGCTGTT CATGACAGAC
CGGGAGCGGC TGGCAGAGGC GCGGCAGCGT GAGCTGCAGC GGCAGGAGCT TCTCATGCAG
AAGCGGCTGG CGATGGAGTC CAACAAGATC CTCCAGGAGC AGCAGGAGAT GGAGCGGCAA
AGGAGAAAAG AAATTGCCCA GAAGGCAGCA GAGGAAAATG AGAGATACCG GAAGGAGATG
GAACAGATTG TAGAGGAGGA AGAGAAGTTT AAGAAGCAAT GGGAAGAAGA CTGGGGCTCA
AAGGAACAGC TACTCTTGCC TAAAACCATC ACTGCTGAGG TACACCCAGT ACCCCTTCGC
AAGCCAAAGT ATGATCAGGG AGTGGAACCT GAGCTCGAGC CCGCAGATGA CCTGGATGGA
GGCACGGAGG AGCAGGGAGA GCAGAAAGGA AAAGATAAGA AGAAAGCCAA GTATGGCAGC
CTGCAGGACT TGAGAAAGAA TAAGAAAGAA CTGGAGTTTG AGCAAAAGCT TTACAAAGAG
AAAGAGGAAA TGCTGGAGAA GGAAAAGCAG CTAAAGATCA ACCGGCTGGC CCAGGAGGAT
TTCCGGAAAT ATGAGGAAGG CTTTGACCCC TACTCTATGT TCACCCCAGA GCAGATCATG
GGGAAGGATG TCCGGCTCCT ACGCATCAAG AAGGAGGGAT CCTTAGACCT GGCCCTGGAA
GGCGGTGTGG ACTCCCCCAT TGGGAAGGTG GTCGTTTCTG CTGTGTATGA GCGGGGAGCT
GCTGAGCGGC ATGGTGGCAT TGTGAAAGGG GACGAGATCA TGGCAATCAA CGGCAAGATT
GTGACAGACT ACACCCTGGC TGAGGCTGAG GCTGCCCTGC AGAAGGCCTG GAATCAGGGC
GGGGACTGGA TCGACCTTGT GGTTGCCGTC TGCCCCCCAA AGGAGTATGA CGATGAGCTG
ACCTTCTTCT GA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OHu63683
Accession Version XM_011519833.1 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 1443bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector Document: User manual_GenEZ ORF Clone Products.pdf (pdf)
Clone information Clone Map
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags Document: MSDS_GenEZ ORF Clone Products.pdf (pdf)
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product harmonin isoform X3
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_009237.19) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG CTGTAAATGT GCTGAAGAGT
AGCCGCAGCC TGACCATCTC CATTGTAGCT GCAGCTGGCC GGGAGCTGTT CATGACAGAC
CGGGAGCGGC TGGCAGAGGC GCGGCAGCGT GAGCTGCAGC GGCAGGAGCT TCTCATGCAG
AAGCGGCTGG CGATGGAGTC CAACAAGATC CTCCAGGAGC AGCAGGAGAT GGAGCGGCAA
AGGAGAAAAG AAATTGCCCA GAAGGCAGCA GAGGAAAATG AGAGATACCG GAAGGAGATG
GAACAGATTG TAGAGGAGGA AGAGAAGTTT AAGAAGCAAT GGGAAGAAGA CTGGGGCTCA
AAGGAACAGC TACTCTTGCC TAAAACCATC ACTGCTGAGG TACACCCAGT ACCCCTTCGC
AAGCCAAAGT ATGATCAGGG AGTGGAACCT GAGCTCGAGC CCGCAGATGA CCTGGATGGA
GGCACGGAGG AGCAGGGAGA GCAGCTTTTG GATGGTTTTA TCGTTACGAT GGCAAATTCC
CAACCATCCG GAAGGATTTC CGGAAATATG AGGAAGGCTT TGACCCCTAC TCTATGTTCA
CCCCAGAGCA GATCATGGGG AAGGATGTCC GGCTCCTACG CATCAAGAAG GAGGGATCCT
TAG
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeqXP_011518135.1
CDS110..1552
Misc Feature(1)113..349(+)
Misc Feature(2)116..313(+)
Misc Feature(3)362..604(+)
Misc Feature(4)398..574(+)
Misc Feature(5)734..976(+)
Misc Feature(6)770..946(+)
Misc Feature(7)1010..>1174(+)
Misc Feature(8)1013..>1258(+)
Translation
Position Chain Variation Link
1 1 a, t dbSNP:556793498
13 13 g, t dbSNP:541115741
16 16 a, t dbSNP:150649483
20 20 a, c dbSNP:539241654
39 39 g, t dbSNP:571065113
50 50 c, t dbSNP:371444878
51 51 c, g dbSNP:773787616
58 58 a, c, g dbSNP:528008701
73 73 c, t dbSNP:779706912
74 74 a, g dbSNP:370904833
78 78 c, g dbSNP:771635424
79 79 g, t dbSNP:374794188
85 85 a, c, g dbSNP:371621268
115 115 c, t dbSNP:753871690
129 129 a, g dbSNP:777396814
133 133 -, a dbSNP:758169847
147 147 c, t dbSNP:757473472
150 150 a, g dbSNP:753946678
157 157 a, g dbSNP:764138582
170 170 g, t dbSNP:181215175
174 174 a, g dbSNP:753180549
175 175 a, g dbSNP:768165881
181 181 a, c dbSNP:759929001
182 182 c, t dbSNP:751983859
183 183 a, g dbSNP:536191185
185 185 c, t dbSNP:267602805
191 191 a, g dbSNP:143192514
196 196 g, t dbSNP:772769969
200 200 c, g, t dbSNP:121908370
201 201 a, g dbSNP:776511246
204 204 c, t dbSNP:376949470
210 210 a, g dbSNP:75157409
214 214 c, g dbSNP:369151395
219 219 c, t dbSNP:531538376
223 223 c, t dbSNP:137962152
224 224 a, g dbSNP:781491502
226 226 g, t dbSNP:755530588
229 229 c, t dbSNP:752165873
230 230 a, g dbSNP:780439529
233 233 c, t dbSNP:545856155
235 235 c, t dbSNP:750823343
236 236 a, g dbSNP:145500807
244 244 a, c, t dbSNP:140319839
251 251 c, g dbSNP:374829758
254 254 c, g dbSNP:146817459
261 261 a, g dbSNP:775363189
269 269 a, c dbSNP:199749712
271 271 c, t dbSNP:767509662
272 272 c, t dbSNP:117171411
275 275 a, c dbSNP:774197490
281 281 -, ct dbSNP:778772895
281 281 c, t dbSNP:200525985
292 292 c, t dbSNP:748443136
293 293 a, g dbSNP:776833569
295 295 c, t dbSNP:200239508
296 296 c, t dbSNP:375741564
297 297 a, g dbSNP:372497947
300 300 c, t dbSNP:758959670
306 306 g, t dbSNP:145040342
310 310 a, c dbSNP:779390547
313 313 g, t dbSNP:140945339
317 317 c, t dbSNP:753527535
323 323 a, g dbSNP:763766845
325 325 a, g dbSNP:151045328
328 328 a, g dbSNP:752212661
334 334 c, t dbSNP:111033279
342 342 a, c dbSNP:759581780
347 347 -, c dbSNP:397515359
347 347 c, t dbSNP:774005703
348 348 a, c, g dbSNP:148597739
351 351 a, g dbSNP:776956839
354 354 c, t dbSNP:769021971
364 364 a, g dbSNP:769870305
373 373 a, c, g dbSNP:397517879
374 374 c, t dbSNP:764346200
375 375 a, g dbSNP:749647539
383 383 c, t dbSNP:775407483
384 384 a, g dbSNP:147954324
385 385 c, t dbSNP:367957451
391 391 a, c, t dbSNP:554615192
394 394 c, g, t dbSNP:374515579
395 395 a, g dbSNP:769420899
403 403 c, t dbSNP:34055234
404 404 a, g, t dbSNP:370054635
406 406 c, t dbSNP:751057721
415 415 a, g dbSNP:779846750
416 416 c, t dbSNP:397517880
417 417 a, g, t dbSNP:397514500
425 425 c, g dbSNP:750240156
429 429 a, c dbSNP:765184158
433 433 c, t dbSNP:549758189
445 445 c, t dbSNP:752923242
450 450 c, t dbSNP:767655370
457 457 c, t dbSNP:531626349
469 469 c, t dbSNP:140869579
470 470 a, c, g dbSNP:377510653
471 471 g, t dbSNP:147383732
475 475 g, t dbSNP:770187704
477 477 c, g dbSNP:748496002
484 484 -, c dbSNP:756032457
487 487 c, t dbSNP:369375384
488 488 a, g dbSNP:768207716
490 490 g, t dbSNP:41282942
497 497 a, g dbSNP:55843567
503 503 g, t dbSNP:751821660
505 505 c, t dbSNP:150522757
506 506 a, g dbSNP:758424766
511 511 c, t dbSNP:750516784
512 512 a, g dbSNP:145013633
514 514 a, c dbSNP:762298047
515 515 c, t dbSNP:368903400
516 516 a, g dbSNP:558663132
517 517 c, g dbSNP:200335331
522 522 a, g dbSNP:761149947
524 524 a, g dbSNP:376786663
528 528 a, c dbSNP:775231512
533 533 a, g dbSNP:771861342
539 539 c, t dbSNP:745306674
540 540 c, t dbSNP:773799306
542 542 c, t dbSNP:770887795
548 548 c, t dbSNP:770952404
549 549 a, g dbSNP:777591673
550 550 a, t dbSNP:769438169
551 551 a, g dbSNP:747960087
560 560 a, g dbSNP:369866148
569 569 a, g dbSNP:780193063
572 572 c, t dbSNP:377145777
573 573 c, g dbSNP:142730611
578 578 a, g dbSNP:778921099
583 583 a, t dbSNP:757763475
589 589 a, g dbSNP:201812681
598 598 a, g dbSNP:764681078
605 605 c, t dbSNP:367996370
622 622 c, g, t dbSNP:199739341
623 623 a, g dbSNP:748703138
634 634 c, t dbSNP:539851299
641 641 a, g dbSNP:755514689
647 647 c, g dbSNP:747331051
649 649 c, t dbSNP:145510974
660 660 a, c, g dbSNP:113015650
671 671 g, t dbSNP:750134316
674 674 -, g dbSNP:751637626
678 678 c, t dbSNP:200319849
679 679 a, g dbSNP:756709989
688 688 a, g dbSNP:753347445
691 691 c, t dbSNP:397517882
692 692 a, g dbSNP:760703501
696 696 a, g dbSNP:397517883
698 698 a, g dbSNP:772472743
699 699 a, g dbSNP:576809888
699 699 -, g dbSNP:764360108
701 701 a, t dbSNP:141771249
707 707 a, g dbSNP:770543827
708 708 -, g dbSNP:763179932
709 709 c, t dbSNP:748975874
713 713 c, t dbSNP:145568338
723 723 a, g dbSNP:777321803
737 737 a, t dbSNP:755601799
738 738 a, c dbSNP:372789934
742 742 g, t dbSNP:781118419
756 756 -, acca dbSNP:753010430
757 757 -, ggt dbSNP:765598399
757 757 a, g dbSNP:77137413
759 759 a, t dbSNP:751387157
760 760 a, g dbSNP:75977878
767 767 c, t dbSNP:766327614
768 768 a, c, g dbSNP:754055631
772 772 c, t dbSNP:764247168
778 778 a, c dbSNP:144761543
793 793 c, t dbSNP:149172005
794 794 g, t dbSNP:759639970
795 795 a, g dbSNP:200523032
822 822 c, t dbSNP:774790511
839 839 a, g dbSNP:766885290
854 854 a, c, g dbSNP:181762689
861 861 a, g dbSNP:773514992
869 869 a, c dbSNP:543985400
884 884 g, t dbSNP:775210992
885 885 g, t dbSNP:772108970
886 886 c, t dbSNP:745828958
887 887 a, g dbSNP:369461618
889 889 a, g dbSNP:770579089
890 890 a, g dbSNP:749119650
892 892 a, c dbSNP:781322765
898 898 c, g, t dbSNP:376197674
899 899 a, g dbSNP:79875849
901 901 a, c, t dbSNP:750856849
902 902 a, g dbSNP:199537187
907 907 c, t dbSNP:762028402
917 917 g, t dbSNP:754263265
928 928 a, g dbSNP:754746834
931 931 a, t dbSNP:769539248
940 940 a, g dbSNP:747960138
947 947 a, g dbSNP:775519842
950 950 a, c dbSNP:112891356
953 953 c, t dbSNP:145245642
954 954 a, g dbSNP:779111365
955 955 c, t dbSNP:757670837
957 957 g, t dbSNP:749768019
960 960 a, c, t dbSNP:756485601
964 964 c, t dbSNP:753114474
969 969 c, t dbSNP:767070713
973 973 g, t dbSNP:754717329
978 978 c, t dbSNP:751010133
979 979 a, t dbSNP:765955209
984 984 c, g dbSNP:200322793
985 985 c, t dbSNP:773086388
989 989 c, t dbSNP:555152976
990 990 a, g dbSNP:773481791
992 992 a, g dbSNP:200127622
996 996 c, t dbSNP:771375713
998 998 c, t dbSNP:748728168
1010 1010 a, c, t dbSNP:574790229
1011 1011 a, g dbSNP:556221893
1015 1015 a, g dbSNP:779617355
1016 1016 c, t dbSNP:749821587
1017 1017 a, g dbSNP:397517884
1029 1029 c, t dbSNP:749924388
1030 1030 a, g dbSNP:778447994
1031 1031 c, g, t dbSNP:753755365
1032 1032 a, g dbSNP:763948115
1037 1037 c, t dbSNP:760448018
1038 1038 a, g dbSNP:752499487
1047 1047 a, c dbSNP:766692857
1048 1048 g, t dbSNP:763313646
1049 1049 c, t dbSNP:773393925
1050 1050 a, g dbSNP:769953534
1054 1054 g, t dbSNP:761821724
1055 1055 c, g dbSNP:35336155
1056 1056 a, g dbSNP:769049771
1064 1064 a, t dbSNP:747397802
1065 1065 g, t dbSNP:775894565
1069 1069 c, g dbSNP:41282934
1073 1073 a, c, t dbSNP:778554644
1074 1074 a, g dbSNP:140424216
1075 1075 c, g dbSNP:748749433
1080 1080 a, c, t dbSNP:756062744
1081 1081 a, g dbSNP:752517458
1097 1097 a, g dbSNP:767460132
1100 1100 c, g dbSNP:754851671
1124 1124 c, t dbSNP:200837155
1125 1125 a, g dbSNP:765571023
1126 1126 g, t dbSNP:761886944
1127 1127 a, c dbSNP:776644722
1130 1130 a, g dbSNP:567436989
1134 1134 a, g dbSNP:759887115
1146 1146 a, c dbSNP:774753537
1148 1148 c, g, t dbSNP:762551629
1149 1149 a, g dbSNP:144896074
1153 1153 c, g dbSNP:769136040
1159 1159 a, t dbSNP:747674867
1165 1165 a, g dbSNP:781209695
1170 1170 a, g dbSNP:768782484
1173 1173 g, t dbSNP:746789590
1178 1178 a, c, g, t dbSNP:140934960
1187 1187 a, g, t dbSNP:756115246
1190 1190 a, g dbSNP:752837878
1195 1195 a, g dbSNP:147727890
1197 1197 c, t dbSNP:750856477
1210 1210 a, g dbSNP:764975771
1225 1225 a, g dbSNP:367623689
1229 1229 a, c, t dbSNP:374699745
1232 1232 c, g dbSNP:372333441
1236 1236 a, t dbSNP:760259812
1242 1242 a, g dbSNP:550843060
1245 1245 a, g dbSNP:202174251
1252 1252 a, g dbSNP:745649293
1277 1277 a, g dbSNP:374410443
1292 1292 c, t dbSNP:769984840
1293 1293 a, c dbSNP:748321973
1296 1296 c, t dbSNP:781424965
1297 1297 a, c, g, t dbSNP:2240487
1300 1300 a, c dbSNP:747125926
1304 1304 c, t dbSNP:267602804
1306 1306 a, t dbSNP:780412282
1307 1307 c, t dbSNP:759009035
1308 1308 a, g dbSNP:750721690
1309 1309 a, c dbSNP:765743810
1315 1315 a, g dbSNP:757715642
1324 1324 g, t dbSNP:148649303
1326 1326 a, t dbSNP:758807447
1329 1329 a, c, g dbSNP:143923730
1334 1334 a, g dbSNP:757625535
1336 1336 a, g dbSNP:754264953
1337 1337 c, t dbSNP:763837481
1345 1345 c, t dbSNP:755834769
1346 1346 a, g dbSNP:752129544
1350 1350 a, c dbSNP:767006857
1351 1351 c, t dbSNP:759001163
1352 1352 a, g dbSNP:116996553
1354 1354 a, t dbSNP:766318556
1358 1358 a, g dbSNP:762723760
1367 1367 a, g dbSNP:546512220
1370 1370 a, g dbSNP:115931035
1374 1374 c, t dbSNP:761005701
1375 1375 a, g dbSNP:35188020
1391 1391 c, t dbSNP:772148994
1392 1392 a, g dbSNP:746527367
1394 1394 c, t dbSNP:778176996
1398 1398 g, t dbSNP:770131676
1403 1403 g, t dbSNP:748477346
1411 1411 c, t dbSNP:780885203
1412 1412 a, g dbSNP:754693236
1416 1416 c, g, t dbSNP:377439949
1417 1417 a, g dbSNP:727503712
1419 1419 c, t dbSNP:199704356
1433 1433 c, t dbSNP:765088964
1435 1435 a, g dbSNP:757016395
1438 1438 c, t dbSNP:141889092
1447 1447 a, t dbSNP:776940763
1450 1450 c, t dbSNP:397517874
1451 1451 a, g dbSNP:371626423
1453 1453 a, g dbSNP:148168494
1458 1458 c, t dbSNP:772773409
1466 1466 a, g dbSNP:746211878
1475 1475 c, g dbSNP:548507585
1479 1479 c, g dbSNP:771347766
1484 1484 c, g, t dbSNP:200182990
1485 1485 g, t dbSNP:769281868
1497 1497 g, t dbSNP:756452832
1499 1499 a, g dbSNP:201600193
1504 1504 a, g dbSNP:767662810
1505 1505 c, t dbSNP:370437884
1512 1512 a, g dbSNP:751998841
1513 1513 c, g dbSNP:766976437
1519 1519 a, c, t dbSNP:143803480
1520 1520 a, g dbSNP:770171347
1524 1524 c, t dbSNP:151251262
1528 1528 c, g, t dbSNP:757163581
1529 1529 a, g dbSNP:753703742
1531 1531 a, g, t dbSNP:145832659
1537 1537 -, aag dbSNP:745722516
1538 1538 a, g dbSNP:143778195
1540 1540 a, g dbSNP:771504780
1543 1543 a, g dbSNP:745758540
1544 1544 a, g dbSNP:774434089
1547 1547 c, t dbSNP:140313023
1554 1554 a, c, g dbSNP:781240730
1556 1556 c, t dbSNP:755278326
1558 1558 g, t dbSNP:747220783
1563 1563 a, g dbSNP:780145485
1567 1567 a, g dbSNP:758479938
1569 1569 c, t dbSNP:375492038
1570 1570 a, c, g dbSNP:727505083
1571 1571 a, g, t dbSNP:763628668
1574 1574 c, t dbSNP:760325149
1576 1576 a, g dbSNP:775036726
1585 1585 -, a dbSNP:758555088
1589 1589 a, g dbSNP:766984429
1594 1594 a, g dbSNP:531977664
1598 1598 c, t dbSNP:570951456
1599 1599 c, t dbSNP:10832796
1600 1600 a, g dbSNP:397517875
1606 1606 g, t dbSNP:34077456
1608 1608 c, t dbSNP:376193347
1617 1617 a, g dbSNP:773014424
1618 1618 c, t dbSNP:374376964
1619 1619 a, g dbSNP:747189986
1621 1621 a, g dbSNP:199729381
1630 1630 a, g dbSNP:772123405
1632 1632 a, g dbSNP:746011575
1633 1633 a, c, t dbSNP:200428926
1634 1634 a, g dbSNP:563952065
1636 1636 c, t dbSNP:372227474

Target ORF information:

RefSeq Version XM_011519833
Organism Homo sapiens (human)
Definition PREDICTED: Homo sapiens Usher syndrome 1C (autosomal recessive, severe) (USH1C), transcript variant X3, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
XM_011519833

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG CTGTAAATGT GCTGAAGAGT
AGCCGCAGCC TGACCATCTC CATTGTAGCT GCAGCTGGCC GGGAGCTGTT CATGACAGAC
CGGGAGCGGC TGGCAGAGGC GCGGCAGCGT GAGCTGCAGC GGCAGGAGCT TCTCATGCAG
AAGCGGCTGG CGATGGAGTC CAACAAGATC CTCCAGGAGC AGCAGGAGAT GGAGCGGCAA
AGGAGAAAAG AAATTGCCCA GAAGGCAGCA GAGGAAAATG AGAGATACCG GAAGGAGATG
GAACAGATTG TAGAGGAGGA AGAGAAGTTT AAGAAGCAAT GGGAAGAAGA CTGGGGCTCA
AAGGAACAGC TACTCTTGCC TAAAACCATC ACTGCTGAGG TACACCCAGT ACCCCTTCGC
AAGCCAAAGT ATGATCAGGG AGTGGAACCT GAGCTCGAGC CCGCAGATGA CCTGGATGGA
GGCACGGAGG AGCAGGGAGA GCAGCTTTTG GATGGTTTTA TCGTTACGAT GGCAAATTCC
CAACCATCCG GAAGGATTTC CGGAAATATG AGGAAGGCTT TGACCCCTAC TCTATGTTCA
CCCCAGAGCA GATCATGGGG AAGGATGTCC GGCTCCTACG CATCAAGAAG GAGGGATCCT
TAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OHu63684
Accession Version XM_011519834.1 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 1413bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector Document: User manual_GenEZ ORF Clone Products.pdf (pdf)
Clone information Clone Map
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags Document: MSDS_GenEZ ORF Clone Products.pdf (pdf)
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product harmonin isoform X4
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_009237.19) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG CTGTAAATGT GCTGAAGAGT
AGCCGCAGCC TGACCATCTC CATTGTAGCT GCAGCTGGCC GGGAGCTGTT CATGACAGAC
CGGGAGCGGC TGGCAGAGGC GCGGCAGCGT GAGCTGCAGC GGCAGGAGCT TCTCATGCAG
AAGCGGCTGG CGATGGAGTC CAACAAGATC CTCCAGGAGC AGCAGGAGAT GGAGCGGCAA
AGGAGAAAAG AAATTGCCCA GAAGGCAGCA GAGGAAAATG AGAGATACCG GAAGGAGATG
GAACAGATTG TAGAGGAGGA AGAGAAGTTT AAGAAGCAAT GGGAAGAAGA CTGGGGCTCA
AAGGAACAGC TACTCTTGCC TAAAACCATC ACTGCTGAGG TACACCCAGT ACCCCTTCGC
AAGCCAAAGT ATGATCAGGG AGTGGAACCT GAGCTCGAGC CCGCAGATGA CCTGGATGGA
GGCACGGAGG AGCAGGGAGA GCAGCTTTTG GATGGTTTTA TCGTTACGAT GGCAAATTCC
CAACCATCCG GAAGAGCCGT GAGAGACTCT TTGTCTCCCA GCAGCTGGAA CGCCAAGTCT
CCAGGAAATG CAAGTGGGTA TCCATGGCCA TGA
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeqXP_011518136.1
CDS110..1522
Misc Feature(1)113..349(+)
Misc Feature(2)116..313(+)
Misc Feature(3)362..604(+)
Misc Feature(4)398..574(+)
Misc Feature(5)734..976(+)
Misc Feature(6)770..946(+)
Misc Feature(7)1010..>1174(+)
Misc Feature(8)1013..>1258(+)
Translation
Position Chain Variation Link
1 1 a, t dbSNP:556793498
13 13 g, t dbSNP:541115741
16 16 a, t dbSNP:150649483
20 20 a, c dbSNP:539241654
39 39 g, t dbSNP:571065113
50 50 c, t dbSNP:371444878
51 51 c, g dbSNP:773787616
58 58 a, c, g dbSNP:528008701
73 73 c, t dbSNP:779706912
74 74 a, g dbSNP:370904833
78 78 c, g dbSNP:771635424
79 79 g, t dbSNP:374794188
85 85 a, c, g dbSNP:371621268
115 115 c, t dbSNP:753871690
129 129 a, g dbSNP:777396814
133 133 -, a dbSNP:758169847
147 147 c, t dbSNP:757473472
150 150 a, g dbSNP:753946678
157 157 a, g dbSNP:764138582
170 170 g, t dbSNP:181215175
174 174 a, g dbSNP:753180549
175 175 a, g dbSNP:768165881
181 181 a, c dbSNP:759929001
182 182 c, t dbSNP:751983859
183 183 a, g dbSNP:536191185
185 185 c, t dbSNP:267602805
191 191 a, g dbSNP:143192514
196 196 g, t dbSNP:772769969
200 200 c, g, t dbSNP:121908370
201 201 a, g dbSNP:776511246
204 204 c, t dbSNP:376949470
210 210 a, g dbSNP:75157409
214 214 c, g dbSNP:369151395
219 219 c, t dbSNP:531538376
223 223 c, t dbSNP:137962152
224 224 a, g dbSNP:781491502
226 226 g, t dbSNP:755530588
229 229 c, t dbSNP:752165873
230 230 a, g dbSNP:780439529
233 233 c, t dbSNP:545856155
235 235 c, t dbSNP:750823343
236 236 a, g dbSNP:145500807
244 244 a, c, t dbSNP:140319839
251 251 c, g dbSNP:374829758
254 254 c, g dbSNP:146817459
261 261 a, g dbSNP:775363189
269 269 a, c dbSNP:199749712
271 271 c, t dbSNP:767509662
272 272 c, t dbSNP:117171411
275 275 a, c dbSNP:774197490
281 281 -, ct dbSNP:778772895
281 281 c, t dbSNP:200525985
292 292 c, t dbSNP:748443136
293 293 a, g dbSNP:776833569
295 295 c, t dbSNP:200239508
296 296 c, t dbSNP:375741564
297 297 a, g dbSNP:372497947
300 300 c, t dbSNP:758959670
306 306 g, t dbSNP:145040342
310 310 a, c dbSNP:779390547
313 313 g, t dbSNP:140945339
317 317 c, t dbSNP:753527535
323 323 a, g dbSNP:763766845
325 325 a, g dbSNP:151045328
328 328 a, g dbSNP:752212661
334 334 c, t dbSNP:111033279
342 342 a, c dbSNP:759581780
347 347 -, c dbSNP:397515359
347 347 c, t dbSNP:774005703
348 348 a, c, g dbSNP:148597739
351 351 a, g dbSNP:776956839
354 354 c, t dbSNP:769021971
364 364 a, g dbSNP:769870305
373 373 a, c, g dbSNP:397517879
374 374 c, t dbSNP:764346200
375 375 a, g dbSNP:749647539
383 383 c, t dbSNP:775407483
384 384 a, g dbSNP:147954324
385 385 c, t dbSNP:367957451
391 391 a, c, t dbSNP:554615192
394 394 c, g, t dbSNP:374515579
395 395 a, g dbSNP:769420899
403 403 c, t dbSNP:34055234
404 404 a, g, t dbSNP:370054635
406 406 c, t dbSNP:751057721
415 415 a, g dbSNP:779846750
416 416 c, t dbSNP:397517880
417 417 a, g, t dbSNP:397514500
425 425 c, g dbSNP:750240156
429 429 a, c dbSNP:765184158
433 433 c, t dbSNP:549758189
445 445 c, t dbSNP:752923242
450 450 c, t dbSNP:767655370
457 457 c, t dbSNP:531626349
469 469 c, t dbSNP:140869579
470 470 a, c, g dbSNP:377510653
471 471 g, t dbSNP:147383732
475 475 g, t dbSNP:770187704
477 477 c, g dbSNP:748496002
484 484 -, c dbSNP:756032457
487 487 c, t dbSNP:369375384
488 488 a, g dbSNP:768207716
490 490 g, t dbSNP:41282942
497 497 a, g dbSNP:55843567
503 503 g, t dbSNP:751821660
505 505 c, t dbSNP:150522757
506 506 a, g dbSNP:758424766
511 511 c, t dbSNP:750516784
512 512 a, g dbSNP:145013633
514 514 a, c dbSNP:762298047
515 515 c, t dbSNP:368903400
516 516 a, g dbSNP:558663132
517 517 c, g dbSNP:200335331
522 522 a, g dbSNP:761149947
524 524 a, g dbSNP:376786663
528 528 a, c dbSNP:775231512
533 533 a, g dbSNP:771861342
539 539 c, t dbSNP:745306674
540 540 c, t dbSNP:773799306
542 542 c, t dbSNP:770887795
548 548 c, t dbSNP:770952404
549 549 a, g dbSNP:777591673
550 550 a, t dbSNP:769438169
551 551 a, g dbSNP:747960087
560 560 a, g dbSNP:369866148
569 569 a, g dbSNP:780193063
572 572 c, t dbSNP:377145777
573 573 c, g dbSNP:142730611
578 578 a, g dbSNP:778921099
583 583 a, t dbSNP:757763475
589 589 a, g dbSNP:201812681
598 598 a, g dbSNP:764681078
605 605 c, t dbSNP:367996370
622 622 c, g, t dbSNP:199739341
623 623 a, g dbSNP:748703138
634 634 c, t dbSNP:539851299
641 641 a, g dbSNP:755514689
647 647 c, g dbSNP:747331051
649 649 c, t dbSNP:145510974
660 660 a, c, g dbSNP:113015650
671 671 g, t dbSNP:750134316
674 674 -, g dbSNP:751637626
678 678 c, t dbSNP:200319849
679 679 a, g dbSNP:756709989
688 688 a, g dbSNP:753347445
691 691 c, t dbSNP:397517882
692 692 a, g dbSNP:760703501
696 696 a, g dbSNP:397517883
698 698 a, g dbSNP:772472743
699 699 a, g dbSNP:576809888
699 699 -, g dbSNP:764360108
701 701 a, t dbSNP:141771249
707 707 a, g dbSNP:770543827
708 708 -, g dbSNP:763179932
709 709 c, t dbSNP:748975874
713 713 c, t dbSNP:145568338
723 723 a, g dbSNP:777321803
737 737 a, t dbSNP:755601799
738 738 a, c dbSNP:372789934
742 742 g, t dbSNP:781118419
756 756 -, acca dbSNP:753010430
757 757 -, ggt dbSNP:765598399
757 757 a, g dbSNP:77137413
759 759 a, t dbSNP:751387157
760 760 a, g dbSNP:75977878
767 767 c, t dbSNP:766327614
768 768 a, c, g dbSNP:754055631
772 772 c, t dbSNP:764247168
778 778 a, c dbSNP:144761543
793 793 c, t dbSNP:149172005
794 794 g, t dbSNP:759639970
795 795 a, g dbSNP:200523032
822 822 c, t dbSNP:774790511
839 839 a, g dbSNP:766885290
854 854 a, c, g dbSNP:181762689
861 861 a, g dbSNP:773514992
869 869 a, c dbSNP:543985400
884 884 g, t dbSNP:775210992
885 885 g, t dbSNP:772108970
886 886 c, t dbSNP:745828958
887 887 a, g dbSNP:369461618
889 889 a, g dbSNP:770579089
890 890 a, g dbSNP:749119650
892 892 a, c dbSNP:781322765
898 898 c, g, t dbSNP:376197674
899 899 a, g dbSNP:79875849
901 901 a, c, t dbSNP:750856849
902 902 a, g dbSNP:199537187
907 907 c, t dbSNP:762028402
917 917 g, t dbSNP:754263265
928 928 a, g dbSNP:754746834
931 931 a, t dbSNP:769539248
940 940 a, g dbSNP:747960138
947 947 a, g dbSNP:775519842
950 950 a, c dbSNP:112891356
953 953 c, t dbSNP:145245642
954 954 a, g dbSNP:779111365
955 955 c, t dbSNP:757670837
957 957 g, t dbSNP:749768019
960 960 a, c, t dbSNP:756485601
964 964 c, t dbSNP:753114474
969 969 c, t dbSNP:767070713
973 973 g, t dbSNP:754717329
978 978 c, t dbSNP:751010133
979 979 a, t dbSNP:765955209
984 984 c, g dbSNP:200322793
985 985 c, t dbSNP:773086388
989 989 c, t dbSNP:555152976
990 990 a, g dbSNP:773481791
992 992 a, g dbSNP:200127622
996 996 c, t dbSNP:771375713
998 998 c, t dbSNP:748728168
1010 1010 a, c, t dbSNP:574790229
1011 1011 a, g dbSNP:556221893
1015 1015 a, g dbSNP:779617355
1016 1016 c, t dbSNP:749821587
1017 1017 a, g dbSNP:397517884
1029 1029 c, t dbSNP:749924388
1030 1030 a, g dbSNP:778447994
1031 1031 c, g, t dbSNP:753755365
1032 1032 a, g dbSNP:763948115
1037 1037 c, t dbSNP:760448018
1038 1038 a, g dbSNP:752499487
1047 1047 a, c dbSNP:766692857
1048 1048 g, t dbSNP:763313646
1049 1049 c, t dbSNP:773393925
1050 1050 a, g dbSNP:769953534
1054 1054 g, t dbSNP:761821724
1055 1055 c, g dbSNP:35336155
1056 1056 a, g dbSNP:769049771
1064 1064 a, t dbSNP:747397802
1065 1065 g, t dbSNP:775894565
1069 1069 c, g dbSNP:41282934
1073 1073 a, c, t dbSNP:778554644
1074 1074 a, g dbSNP:140424216
1075 1075 c, g dbSNP:748749433
1080 1080 a, c, t dbSNP:756062744
1081 1081 a, g dbSNP:752517458
1097 1097 a, g dbSNP:767460132
1100 1100 c, g dbSNP:754851671
1124 1124 c, t dbSNP:200837155
1125 1125 a, g dbSNP:765571023
1126 1126 g, t dbSNP:761886944
1127 1127 a, c dbSNP:776644722
1130 1130 a, g dbSNP:567436989
1134 1134 a, g dbSNP:759887115
1146 1146 a, c dbSNP:774753537
1148 1148 c, g, t dbSNP:762551629
1149 1149 a, g dbSNP:144896074
1153 1153 c, g dbSNP:769136040
1159 1159 a, t dbSNP:747674867
1165 1165 a, g dbSNP:781209695
1170 1170 a, g dbSNP:768782484
1173 1173 g, t dbSNP:746789590
1178 1178 a, c, g, t dbSNP:140934960
1187 1187 a, g, t dbSNP:756115246
1190 1190 a, g dbSNP:752837878
1195 1195 a, g dbSNP:147727890
1197 1197 c, t dbSNP:750856477
1210 1210 a, g dbSNP:764975771
1225 1225 a, g dbSNP:367623689
1229 1229 a, c, t dbSNP:374699745
1232 1232 c, g dbSNP:372333441
1236 1236 a, t dbSNP:760259812
1242 1242 a, g dbSNP:550843060
1245 1245 a, g dbSNP:202174251
1252 1252 a, g dbSNP:745649293
1277 1277 a, g dbSNP:374410443
1292 1292 c, t dbSNP:769984840
1293 1293 a, c dbSNP:748321973
1296 1296 c, t dbSNP:781424965
1297 1297 a, c, g, t dbSNP:2240487
1300 1300 a, c dbSNP:747125926
1304 1304 c, t dbSNP:267602804
1306 1306 a, t dbSNP:780412282
1307 1307 c, t dbSNP:759009035
1308 1308 a, g dbSNP:750721690
1309 1309 a, c dbSNP:765743810
1315 1315 a, g dbSNP:757715642
1324 1324 g, t dbSNP:148649303
1326 1326 a, t dbSNP:758807447
1329 1329 a, c, g dbSNP:143923730
1334 1334 a, g dbSNP:757625535
1336 1336 a, g dbSNP:754264953
1337 1337 c, t dbSNP:763837481
1345 1345 c, t dbSNP:755834769
1346 1346 a, g dbSNP:752129544
1350 1350 a, c dbSNP:767006857
1351 1351 c, t dbSNP:759001163
1352 1352 a, g dbSNP:116996553
1354 1354 a, t dbSNP:766318556
1358 1358 a, g dbSNP:762723760
1367 1367 a, g dbSNP:546512220
1370 1370 a, g dbSNP:115931035
1374 1374 c, t dbSNP:761005701
1375 1375 a, g dbSNP:35188020
1391 1391 c, t dbSNP:772148994
1392 1392 a, g dbSNP:746527367
1394 1394 c, t dbSNP:778176996
1398 1398 g, t dbSNP:770131676
1403 1403 g, t dbSNP:748477346
1411 1411 c, t dbSNP:780885203
1412 1412 a, g dbSNP:754693236
1416 1416 c, g, t dbSNP:377439949
1417 1417 a, g dbSNP:727503712
1419 1419 c, t dbSNP:199704356
1433 1433 c, t dbSNP:765088964
1435 1435 a, g dbSNP:757016395
1438 1438 c, t dbSNP:141889092
1447 1447 c, t dbSNP:546485155
1448 1448 a, g dbSNP:562785321
1481 1481 c, g dbSNP:112993321
1487 1487 a, t dbSNP:568166239
1571 1571 c, t dbSNP:148729577

Target ORF information:

RefSeq Version XM_011519834
Organism Homo sapiens (human)
Definition PREDICTED: Homo sapiens Usher syndrome 1C (autosomal recessive, severe) (USH1C), transcript variant X4, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
XM_011519834

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG CTGTAAATGT GCTGAAGAGT
AGCCGCAGCC TGACCATCTC CATTGTAGCT GCAGCTGGCC GGGAGCTGTT CATGACAGAC
CGGGAGCGGC TGGCAGAGGC GCGGCAGCGT GAGCTGCAGC GGCAGGAGCT TCTCATGCAG
AAGCGGCTGG CGATGGAGTC CAACAAGATC CTCCAGGAGC AGCAGGAGAT GGAGCGGCAA
AGGAGAAAAG AAATTGCCCA GAAGGCAGCA GAGGAAAATG AGAGATACCG GAAGGAGATG
GAACAGATTG TAGAGGAGGA AGAGAAGTTT AAGAAGCAAT GGGAAGAAGA CTGGGGCTCA
AAGGAACAGC TACTCTTGCC TAAAACCATC ACTGCTGAGG TACACCCAGT ACCCCTTCGC
AAGCCAAAGT ATGATCAGGG AGTGGAACCT GAGCTCGAGC CCGCAGATGA CCTGGATGGA
GGCACGGAGG AGCAGGGAGA GCAGCTTTTG GATGGTTTTA TCGTTACGAT GGCAAATTCC
CAACCATCCG GAAGAGCCGT GAGAGACTCT TTGTCTCCCA GCAGCTGGAA CGCCAAGTCT
CCAGGAAATG CAAGTGGGTA TCCATGGCCA TGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OHu44735
Accession Version NM_001297764.1 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 1602bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector Document: User manual_GenEZ ORF Clone Products.pdf (pdf)
Clone information Clone Map
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags Document: MSDS_GenEZ ORF Clone Products.pdf (pdf)
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 05-JUN-2015
Organism Homo sapiens (human)
Product harmonin isoform c
Comment REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK225614.1, BC016057.1, AB018687.1 and AF039699.1. On Jul 10, 2014 this sequence version replaced gi:578820266. Summary: This gene encodes a scaffold protein that functions in the assembly of Usher protein complexes. The protein contains PDZ domains, a coiled-coil region with a bipartite nuclear localization signal and a PEST degradation sequence. Defects in this gene are the cause of Usher syndrome type 1C and non-syndromic sensorineural deafness autosomal recessive type 18. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2009]. Transcript Variant: This variant (3) has multiple differences in the coding region, compared to variant b3, one of which results in a translational frameshift. The resulting protein (isoform c) has a distinct C-terminus and is shorter than isoform b3. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC016057.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
ATGGACCGAA AAGTGGCCCG AGAATTCCGG CATAAGGTGG ATTTTCTGAT TGAAAATGAT 
GCAGAGAAGG ACTATCTCTA TGATGTGCTG CGAATGTACC ACCAGACCAT GGACGTGGCC
GTGCTCGTGG GAGACCTGAA GCTGGTCATC AATGAACCCA GCCGTCTGCC TCTGTTTGAT
GCCATTCGGC CGCTGATCCC ACTGAAGCAC CAGGTGGAAT ATGATCAGCT GACCCCCCGG
CGCTCCAGGA AGCTGAAGGA GGTGCGTCTG GACCGTCTGC ACCCCGAAGG CCTCGGCCTG
AGTGTGCGTG GTGGCCTGGA GTTTGGCTGT GGGCTCTTCA TCTCCCACCT CATCAAAGGC
GGTCAGGCAG ACAGCGTCGG GCTCCAGGTA GGGGACGAGA TCGTCCGGAT CAATGGATAT
TCCATCTCCT CCTGTACCCA TGAGGAGGTC ATCAACCTCA TTCGAACCAA GAAAACTGTG
TCCATCAAAG TGAGACACAT CGGCCTGATC CCCGTGAAAA GCTCTCCTGA TGAGCCCCTC
ACTTGGCAGT ATGTGGATCA GTTTGTGTCG GAATCTGGGG GCGTGCGAGG CAGCCTGGGC
TCCCCTGGAA ATCGGGAAAA CAAGGAGAAG AAGGTCTTCA TCAGCCTGGT AGGCTCCCGA
GGCCTTGGCT GCAGCATTTC CAGCGGCCCC ATCCAGAAGC CTGGCATCTT TATCAGCCAT
GTGAAACCTG GCTCCCTGTC TGCTGAGGTG GGATTGGAGA TAGGGGACCA GATTGTCGAA
GTCAATGGCG TCGACTTCTC TAACCTGGAT CACAAGGAGG GCCGGGAGCT GTTCATGACA
GACCGGGAGC GGCTGGCAGA GGCGCGGCAG CGTGAGCTGC AGCGGCAGGA GCTTCTCATG
CAGAAGCGGC TGGCGATGGA GTCCAACAAG ATCCTCCAGG AGCAGCAGGA GATGGAGCGG
CAAAGGAGAA AAGAAATTGC CCAGAAGGCA GCAGAGGAAA ATGAGAGATA CCGGAAGGAG
ATGGAACAGA TTGTAGAGGA GGAAGAGAAG TTTAAGAAGC AATGGGAAGA AGACTGGGGC
TCAAAGGAAC AGCTACTCTT GCCTAAAACC ATCACTGCTG AGGTACACCC AGTACCCCTT
CGCAAGCCAA AGTATGATCA GGGAGTGGAA CCTGAGCTCG AGCCCGCAGA TGACCTGGAT
GGAGGCACGG AGGAGCAGGG AGAGCAGGAT TTCCGGAAAT ATGAGGAAGG CTTTGACCCC
TACTCTATGT TCACCCCAGA GCAGATCATG GGGAAGGATG TCCGGCTCCT ACGCATCAAG
AAGGAGGGAT CCTTAGACCT GGCCCTGGAA GGCGGTGTGG ACTCCCCCAT TGGGAAGGTG
GTCGTTTCTG CTGTGTATGA GCGGGGAGCT GCTGAGCGGC ATGGTGGCAT TGTGAAAGGG
GACGAGATCA TGGCAATCAA CGGCAAGATT GTGACAGACT ACACCCTGGC TGAGGCTGAG
GCTGCCCTGC AGAAGGCCTG GAATCAGGGC GGGGACTGGA TCGACCTTGT GGTTGCCGTC
TGCCCCCCAA AGGAGTATGA CGATGAGCTG ACCTTCTTCT GA
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeqNP_001284693.1
CDS110..1711
Misc Feature(1)113..349(+)
Misc Feature(2)116..313(+)
Misc Feature(3)362..604(+)
Misc Feature(4)398..574(+)
Misc Feature(5)734..>928(+)
Misc Feature(6)770..787(+)
Misc Feature(7)956..>1201(+)
Misc Feature(8)1403..1666(+)
Misc Feature(9)1439..1621(+)
Exon (1)1..145
Gene:USH1C
Gene Synonym:
Exon (2)146..213
Gene:USH1C
Gene Synonym:
Exon (3)214..357
Gene:USH1C
Gene Synonym:
Exon (4)358..496
Gene:USH1C
Gene Synonym:
Exon (5)497..605
Gene:USH1C
Gene Synonym:
Exon (6)606..630
Gene:USH1C
Gene Synonym:
Exon (7)631..688
Gene:USH1C
Gene Synonym:
Exon (8)689..783
Gene:USH1C
Gene Synonym:
Exon (9)784..868
Gene:USH1C
Gene Synonym:
Exon (10)869..928
Gene:USH1C
Gene Synonym:
Exon (11)929..1071
Gene:USH1C
Gene Synonym:
Exon (12)1072..1137
Gene:USH1C
Gene Synonym:
Exon (13)1138..1262
Gene:USH1C
Gene Synonym:
Exon (14)1263..1336
Gene:USH1C
Gene Synonym:
Exon (15)1337..1378
Gene:USH1C
Gene Synonym:
Exon (16)1379..1432
Gene:USH1C
Gene Synonym:
Exon (17)1433..1532
Gene:USH1C
Gene Synonym:
Exon (18)1533..1642
Gene:USH1C
Gene Synonym:
Exon (19)1643..1698
Gene:USH1C
Gene Synonym:
Exon (20)1699..2180
Gene:USH1C
Gene Synonym:
Translation
Position Chain Variation Link
1 1 a, t dbSNP:556793498
13 13 g, t dbSNP:541115741
16 16 a, t dbSNP:150649483
20 20 a, c dbSNP:539241654
39 39 g, t dbSNP:571065113
50 50 c, t dbSNP:371444878
51 51 c, g dbSNP:773787616
58 58 a, c, g dbSNP:528008701
73 73 c, t dbSNP:779706912
74 74 a, g dbSNP:370904833
78 78 c, g dbSNP:771635424
79 79 g, t dbSNP:374794188
85 85 a, c, g dbSNP:371621268
115 115 c, t dbSNP:753871690
129 129 a, g dbSNP:777396814
133 133 -, a dbSNP:758169847
147 147 c, t dbSNP:757473472
150 150 a, g dbSNP:753946678
157 157 a, g dbSNP:764138582
170 170 g, t dbSNP:181215175
174 174 a, g dbSNP:753180549
175 175 a, g dbSNP:768165881
181 181 a, c dbSNP:759929001
182 182 c, t dbSNP:751983859
183 183 a, g dbSNP:536191185
185 185 c, t dbSNP:267602805
191 191 a, g dbSNP:143192514
196 196 g, t dbSNP:772769969
200 200 c, g, t dbSNP:121908370
201 201 a, g dbSNP:776511246
204 204 c, t dbSNP:376949470
210 210 a, g dbSNP:75157409
214 214 c, g dbSNP:369151395
219 219 c, t dbSNP:531538376
223 223 c, t dbSNP:137962152
224 224 a, g dbSNP:781491502
226 226 g, t dbSNP:755530588
229 229 c, t dbSNP:752165873
230 230 a, g dbSNP:780439529
233 233 c, t dbSNP:545856155
235 235 c, t dbSNP:750823343
236 236 a, g dbSNP:145500807
244 244 a, c, t dbSNP:140319839
251 251 c, g dbSNP:374829758
254 254 c, g dbSNP:146817459
261 261 a, g dbSNP:775363189
269 269 a, c dbSNP:199749712
271 271 c, t dbSNP:767509662
272 272 c, t dbSNP:117171411
275 275 a, c dbSNP:774197490
281 281 -, ct dbSNP:778772895
281 281 c, t dbSNP:200525985
292 292 c, t dbSNP:748443136
293 293 a, g dbSNP:776833569
295 295 c, t dbSNP:200239508
296 296 c, t dbSNP:375741564
297 297 a, g dbSNP:372497947
300 300 c, t dbSNP:758959670
306 306 g, t dbSNP:145040342
310 310 a, c dbSNP:779390547
313 313 g, t dbSNP:140945339
317 317 c, t dbSNP:753527535
323 323 a, g dbSNP:763766845
325 325 a, g dbSNP:151045328
328 328 a, g dbSNP:752212661
334 334 c, t dbSNP:111033279
342 342 a, c dbSNP:759581780
347 347 -, c dbSNP:397515359
347 347 c, t dbSNP:774005703
348 348 a, c, g dbSNP:148597739
351 351 a, g dbSNP:776956839
354 354 c, t dbSNP:769021971
364 364 a, g dbSNP:769870305
373 373 a, c, g dbSNP:397517879
374 374 c, t dbSNP:764346200
375 375 a, g dbSNP:749647539
383 383 c, t dbSNP:775407483
384 384 a, g dbSNP:147954324
385 385 c, t dbSNP:367957451
391 391 a, c, t dbSNP:554615192
394 394 c, g, t dbSNP:374515579
395 395 a, g dbSNP:769420899
403 403 c, t dbSNP:34055234
404 404 a, g, t dbSNP:370054635
406 406 c, t dbSNP:751057721
415 415 a, g dbSNP:779846750
416 416 c, t dbSNP:397517880
417 417 a, g, t dbSNP:397514500
425 425 c, g dbSNP:750240156
429 429 a, c dbSNP:765184158
433 433 c, t dbSNP:549758189
445 445 c, t dbSNP:752923242
450 450 c, t dbSNP:767655370
457 457 c, t dbSNP:531626349
469 469 c, t dbSNP:140869579
470 470 a, c, g dbSNP:377510653
471 471 g, t dbSNP:147383732
475 475 g, t dbSNP:770187704
477 477 c, g dbSNP:748496002
484 484 -, c dbSNP:756032457
487 487 c, t dbSNP:369375384
488 488 a, g dbSNP:768207716
490 490 g, t dbSNP:41282942
497 497 a, g dbSNP:55843567
503 503 g, t dbSNP:751821660
505 505 c, t dbSNP:150522757
506 506 a, g dbSNP:758424766
511 511 c, t db