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COL9A2 collagen, type IX, alpha 2 [Homo sapiens (human)]

Gene Symbol COL9A2
Entrez Gene ID 1298
Full Name collagen, type IX, alpha 2
Synonyms DJ39G22.4, EDM2, MED, STL5
General protein information
Preferred Names
collagen alpha-2(IX) chain
Names
collagen alpha-2(IX) chain
alpha 2 type IX collagen
collagen IX, alpha-2 polypeptide
Gene Type protein-coding
Organism Homo sapiens (human)
Genome

1

1p33-p32

Summary This gene encodes one of the three alpha chains of type IX collagen, the major collagen component of hyaline cartilage. Type IX collagen, a heterotrimeric molecule, is usually found in tissues containing type II collagen, a fibrillar collagen. This chain is unusual in that, unlike the other two type IX alpha chains, it contains a covalently attached glycosaminoglycan side chain. Mutations in this gene are associated with multiple epiphyseal dysplasia. [provided by RefSeq, Jul 2008]. lac of sum
Disorder MIM:

120260

Disorder Html: Epiphyseal dysplasia, multiple, 2, 600204 (3); {Intervertebral
CloneID RefSeq Accession Definition **Vector *Turnaround time Price
OHu56997 XM_011540714 PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK Not in stock 12-14 Starting from $99.00
OHu24811 XM_006710365 PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK Not in stock 12-14 Starting from $99.00
OHu56998 XM_011540715 PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X3, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OHu56998 XM_011540716 PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X4, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OHu56999 XM_011540717 PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X5, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OHu57000 XM_011540718 PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X6, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OHu24811 NM_001852 Homo sapiens collagen, type IX, alpha 2 (COL9A2), mRNA. pcDNA3.1-C-(k)DYK Not in stock 12-14 Starting from $99.00

*Business Day
**You may select a custom vector to replace pcDNA3.1-C-(k)DYK after clone is added to cart.



CloneID OHu56997D
Sequence Information ORF Nucleotide Sequence (Length: 2082bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product collagen alpha-2(IX) chain isoform X2
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_032977.10) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
ATGGCCGCCG CTACGGCCTC CCCCCGCAGC CTCCTTGTTC TCCTCCAGGT GGTAGTGCTC 
GCTCTGGCGC AGATTAGAGG TCCACCGGGA GAGCGGGGCC CCCCGGGTCC CCCGGGACCG
CCGGGAGTGC CTGGATCCGA CGGCATCGAC GGTGACAATG GGCCCCCTGG AAAAGCTGGC
CCTCCGGGAC CCAAGGGCGA GCCTGGCAAA GCTGGGCCAG ATGGGCCAGA CGGGAAGCCC
GGGATTGATG GTTTAACTGG AGCCAAGGGG GAGCCTGGCC CCATGGGGAT CCCTGGAGTC
AAGGGCCAGC CCGGGCTTCC TGGTCCTCCT GGCCTTCCGG GCCCTGGTTT TGCTGGACCT
CCTGGGCCTC CTGGACCTGT TGGCCTCCCT GGTGAGATTG GAATCCGAGG CCCCAAGGGG
GACCCTGGAC CAGATGGACC ATCGGGGCCC CCAGGACCCC CTGGGAAACC TGGTCGCCCG
GGAACCATCC AGGGTCTGGA AGGCAGTGCG GATTTCCTGG TGAGAGACGA GTGTCCAACC
AACTGTCCAC CCGGAATGAA AGGTCCCCCA GGGCTGCAGG GAGTGAAGGG GCATGCGGGC
AAACGCGGGA TTCTGGGTGA TCCTGGCCAC CAGGGGAAGC CGGGTCCCAA GGGAGATGTG
GGTGCCTCTG GAGAGCAAGG CATCCCTGGA CCACCGGGTC CCCAGGGCAT CAGGGGCTAC
CCAGGCATGG CAGGGCCCAA GGGAGAGACG GGCCCTCATG GATATAAAGG CATGGTGGGC
GCTATCGGTG CCACTGGGCC ACCGGGTGAG GAAGGTCCTA GGGGACCGCC AGGCCGAGCT
GGGGAGAAGG GTGACGAGGG CAGCCCAGGT ATTCGTGGAC CCCAGGGGAT CACAGGCCCG
AAAGGAGCAA CGGGCCCCCC AGGCATCAAC GGCAAGGATG GGACCCCAGG CACGCCTGGC
ATGAAGGGCA GTGCAGGACA GGCGGGACAG CCCGGAAGTC CAGGCCACCA GGGCCTAGCG
GGTGTGCCAG GCCAGCCTGG GACAAAAGGA GGCCCTGGAG ACCAGGGTGA GCCGGGCCCG
CAGGGCCTTC CTGGATTCTC TGGTCCCCCT GGGAAAGAGG GAGAGCCAGG GCCTCGAGGA
GAAATTGGTC CCCAGGGCAT CATGGGACAG AAGGGTGACC AAGGCGAGAG GGGTCCAGTG
GGGCAACCAG GCCCTCAGGG AAGGCAGGGC CCTAAGGGGG AGCAGGGCCC CCCCGGAATT
CCAGGGCCCC AAGGCTTGCC AGGCGTCAAA GGAGACAAGG GCTCCCCAGG GAAGACCGGG
CCCCGCGGCA AAGTGGGTGA CCCAGGGGTG GCCGGCCTCC CCGGAGAGAA AGGCGAGAAG
GGCGAGTCCG GCGAGCCGGG GCCCAAGGGA CAGCAAGGAG TACGTGGAGA ACCCGGCTAC
CCTGGCCCCA GCGGGGATGC GGGCGCCCCA GGGGTTCAGG GCTACCCTGG TCCCCCCGGC
CCTCGAGGAC TGGCCGGGAA CCGAGGCGTG CCAGGACAGC CCGGGAGACA GGGCGTGGAG
GGCCGGGATG CCACTGACCA GCACATCGTG GATGTGGCGC TGAAGATGCT GCAAGAGCAA
CTGGCAGAGG TCGCCGTGAG TGCCAAGCGG GAAGCCCTGG GTGCGGTGGG CATGATGGGT
CCTCCAGGAC CTCCTGGGCC CCCTGGGTAC CCAGGCAAGC AGGGCCCCCA TGGGCACCCT
GGCCCTCGGG GCGTTCCTGG CATCGTGGGA GCCGTGGGTC AGATCGGCAA CACGGGGCCC
AAGGGAAAAC GTGGAGAGAA GGGTGATCCA GGAGAAGTGG GACGGGGGCA CCCCGGGATG
CCTGGGCCCC CAGGGATCCC AGGACTCCCT GGCCGGCCTG GCCAGGCAAT CAACGGCAAG
GATGGAGATC GAGGGTCCCC AGGGGCTCCA GGAGAGGCAG GTCGACCTGG CCTGCCAGGC
CCCGTGGGGC TGCCGGGCTT CTGTGAACCT GCCGCCTGCC TTGGAGCTTC GGCCTATGCC
TCTGCCCGCC TTACAGAGCC TGGATCCATC AAGGGGCCTTT GA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_011539016.1
CDS200..2281
Misc Feature(1)986..1159(+)
Misc Feature(2)1193..1369(+)
Misc Feature(3)1292..1453(+)
Misc Feature(4)1487..1660(+)
Translation
Position Chain Variation Link
19 19 a, g dbSNP:367815748
23 23 a, t dbSNP:574096208
65 65 a, c dbSNP:2747521
110 110 c, t dbSNP:562061195
135 135 c, t dbSNP:532226884
148 148 a, c, t dbSNP:755379888
149 149 g, t dbSNP:758532501
154 154 c, t dbSNP:745890554
156 156 c, t dbSNP:779117955
157 157 a, g dbSNP:373454857
158 158 c, t dbSNP:754394090
159 159 c, g dbSNP:368737564
162 162 c, t dbSNP:756376330
163 163 c, g dbSNP:376809219
168 168 c, t dbSNP:372337925
169 169 a, g dbSNP:370001266
173 173 a, c dbSNP:375579300
174 174 -, c dbSNP:765953379
174 174 c, g dbSNP:764721121
175 175 a, g dbSNP:761794305
189 189 a, c dbSNP:776490605
189 189 -, c dbSNP:757956892
193 193 c, g dbSNP:768499491
200 200 a, g dbSNP:746737931
206 206 a, g dbSNP:200744276
209 209 a, g dbSNP:201243011
216 216 c, g dbSNP:746060830
219 219 c, t dbSNP:779204017
220 220 c, g dbSNP:757401979
221 221 c, g dbSNP:140795858
224 224 -, c dbSNP:754420454
224 224 c, g dbSNP:749827333
229 229 c, t dbSNP:368181488
230 230 c, t dbSNP:74506933
239 239 a, c dbSNP:753051609
242 242 c, t dbSNP:767890705
243 243 -, tcc dbSNP:764658749
252 252 c, t dbSNP:758051363
263 263 c, g dbSNP:750061947
270 270 a, t dbSNP:764737673
279 279 g, t dbSNP:753341843
287 287 a, g dbSNP:193238892
290 290 a, g dbSNP:760465302
294 294 a, g dbSNP:200424850
303 303 -, c dbSNP:761125486
304 304 g, t dbSNP:752669612
318 318 -, c dbSNP:147470756
323 323 a, g dbSNP:754348378
325 325 a, g dbSNP:759339883
330 330 c, g dbSNP:774746956
337 337 c, t dbSNP:374210090
351 351 g, t dbSNP:755595666
353 353 a, g dbSNP:752583449
358 358 c, t dbSNP:754221348
366 366 c, t dbSNP:377589006
384 384 c, t dbSNP:767523458
393 393 a, g dbSNP:756634659
397 397 c, t dbSNP:748908933
398 398 a, g dbSNP:376234058
416 416 c, t dbSNP:375150574
417 417 a, c dbSNP:747646622
420 420 a, t dbSNP:565528937
421 421 c, t dbSNP:143528915
429 429 -, tgggccaga dbSNP:767763762
429 429 a, c, g dbSNP:200737977
430 430 a, c, t dbSNP:372936826
431 431 a, g dbSNP:376722979
439 439 c, t dbSNP:372016237
440 440 a, g dbSNP:776728239
490 490 a, c dbSNP:778538501
498 498 a, t dbSNP:757569443
503 503 a, g dbSNP:776441743
511 511 c, t dbSNP:144072834
512 512 a, g dbSNP:760368550
513 513 a, g dbSNP:775128466
525 525 c, t dbSNP:771473898
529 529 c, t dbSNP:555650940
532 532 c, g dbSNP:770620030
534 534 g, t dbSNP:143008970
535 535 a, t dbSNP:770793938
537 537 c, t dbSNP:763825965
538 538 a, g dbSNP:201859264
541 541 c, t dbSNP:781228778
542 542 c, g dbSNP:755106661
551 551 c, g dbSNP:747104088
552 552 c, g dbSNP:780149118
560 560 a, c dbSNP:555035046
566 566 c, t dbSNP:369407377
573 573 c, g dbSNP:779524087
575 575 a, c dbSNP:146903539
579 579 c, t dbSNP:200808068
589 589 c, t dbSNP:754207553
597 597 c, t dbSNP:148136289
602 602 a, g dbSNP:754653233
606 606 a, g dbSNP:751212530
615 615 a, g dbSNP:765888901
616 616 a, g dbSNP:762408011
627 627 a, g dbSNP:756445062
639 639 a, c dbSNP:751242599
640 640 a, g dbSNP:779631674
642 642 c, t dbSNP:745373699
643 643 a, g dbSNP:749975211
646 646 a, g dbSNP:764719071
647 647 a, c, t dbSNP:753748970
654 654 a, g dbSNP:763798270
657 657 c, t dbSNP:77937237
659 659 c, t dbSNP:375685025
669 669 a, c dbSNP:775879938
674 674 c, g dbSNP:777035204
675 675 a, g dbSNP:143965571
679 679 a, g dbSNP:745522018
683 683 a, t dbSNP:553645941
696 696 c, t dbSNP:756743515
703 703 a, c dbSNP:748881230
708 708 c, t dbSNP:146672981
712 712 a, t dbSNP:756191230
715 715 c, t dbSNP:201819837
721 721 a, g dbSNP:571193555
727 727 c, t dbSNP:371057771
728 728 g, t dbSNP:751763126
731 731 c, t dbSNP:751408782
742 742 c, t dbSNP:563257155
745 745 c, t dbSNP:758704701
749 749 a, c dbSNP:750549213
751 751 c, t dbSNP:756880415
752 752 a, g dbSNP:761837402
755 755 a, g dbSNP:113549021
760 760 a, g dbSNP:764636136
764 764 c, g dbSNP:761059218
768 768 -, cc dbSNP:749888464
773 773 a, c dbSNP:139455364
779 779 g, t dbSNP:554314188
782 782 a, g dbSNP:369700719
787 787 a, g dbSNP:762681124
790 790 a, g dbSNP:757450923
795 795 a, c, t dbSNP:764157850
796 796 a, g dbSNP:756707028
797 797 a, g dbSNP:753088253
803 803 c, t dbSNP:767929481
804 804 a, g dbSNP:759781792
805 805 c, t dbSNP:368775817
823 823 -, cct dbSNP:778437735
826 826 a, c dbSNP:765020647
833 833 c, g dbSNP:761552379
840 840 c, t dbSNP:199831035
855 855 a, g dbSNP:761570761
859 859 c, g dbSNP:776355717
870 870 c, g dbSNP:774328643
873 873 a, g dbSNP:763686661
878 878 a, g dbSNP:760052148
893 893 c, t dbSNP:370064150
894 894 c, t dbSNP:751487740
895 895 a, g dbSNP:147480957
899 899 c, t dbSNP:763700283
900 900 c, t dbSNP:760341544
905 905 a, g dbSNP:139013993
910 910 c, t dbSNP:767043817
916 916 c, t dbSNP:529508967
922 922 a, g dbSNP:759486624
925 925 c, g, t dbSNP:770743976
935 935 c, t dbSNP:762688830
942 942 a, g dbSNP:773038976
948 948 c, t dbSNP:2228565
952 952 a, c dbSNP:747133313
953 953 a, c, g dbSNP:772771389
958 958 c, g, t dbSNP:747499674
970 970 c, t dbSNP:757575585
974 974 a, g dbSNP:747788076
979 979 c, t dbSNP:150444024
980 980 a, g dbSNP:369221204
983 983 a, g dbSNP:751113614
985 985 c, t dbSNP:765872341
986 986 a, g dbSNP:148362133
1002 1002 c, t dbSNP:534724125
1003 1003 a, g dbSNP:764969929
1009 1009 a, g dbSNP:757111279
1013 1013 a, g dbSNP:753732622
1014 1014 a, g dbSNP:763966106
1026 1026 c, t dbSNP:760992606
1027 1027 a, g, t dbSNP:767738040
1034 1034 c, t dbSNP:759612204
1035 1035 a, g dbSNP:752496710
1042 1042 a, g dbSNP:376517036
1043 1043 a, g dbSNP:561050736
1054 1054 c, t dbSNP:140305893
1055 1055 a, g dbSNP:767307495
1056 1056 a, c dbSNP:770075367
1057 1057 a, g dbSNP:746692571
1064 1064 c, t dbSNP:762209791
1073 1073 c, t dbSNP:776949373
1074 1074 a, g dbSNP:771823937
1086 1086 a, g dbSNP:745492026
1090 1090 c, g dbSNP:371503621
1095 1095 c, g dbSNP:770282352
1098 1098 c, t dbSNP:749271511
1099 1099 a, g dbSNP:376866320
1110 1110 c, t dbSNP:756099117
1111 1111 a, g dbSNP:752584833
1113 1113 a, g dbSNP:372191928
1116 1116 c, g, t dbSNP:369110014
1120 1120 a, c dbSNP:747275231
1129 1129 c, t dbSNP:376991606
1130 1130 a, g dbSNP:184896618
1135 1135 a, g dbSNP:560574843
1138 1138 g, t dbSNP:200290031
1144 1144 a, c dbSNP:757772360
1152 1152 c, t dbSNP:754230024
1153 1153 a, g dbSNP:144615318
1166 1166 a, g dbSNP:758677057
1180 1180 a, g dbSNP:746031866
1182 1182 c, t dbSNP:372004899
1183 1183 a, g dbSNP:369479941
1187 1187 ca, tg dbSNP:137853213
1187 1187 a, c, t dbSNP:12077871
1188 1188 a, c, g, t dbSNP:2228564
1192 1192 a, c, t dbSNP:140834689
1193 1193 a, g dbSNP:199733570
1197 1197 c, g dbSNP:772935733
1206 1206 a, c dbSNP:555032997
1214 1214 c, g dbSNP:2228567
1216 1216 a, g dbSNP:761276112
1218 1218 a, c, t dbSNP:150075912
1219 1219 a, g dbSNP:760647943
1221 1221 c, g dbSNP:199502479
1224 1224 c, t dbSNP:751909501
1229 1229 a, g dbSNP:753194894
1234 1234 a, g dbSNP:781695990
1236 1236 c, g dbSNP:755357677
1252 1252 c, t dbSNP:138882727
1260 1260 a, g dbSNP:765020486
1265 1265 g, t dbSNP:755507989
1266 1266 g, t dbSNP:752033124
1272 1272 c, t dbSNP:201772619
1273 1273 a, g dbSNP:6676013
1274 1274 a, g dbSNP:138592408
1275 1275 g, t dbSNP:763541825
1278 1278 c, g dbSNP:760181989
1279 1279 a, g dbSNP:752181922
1298 1298 c, t dbSNP:113880922
1299 1299 c, g dbSNP:767484378
1302 1302 c, g dbSNP:759466010
1304 1304 c, t dbSNP:774190227
1305 1305 a, c dbSNP:777747401
1323 1323 a, g dbSNP:751436539
1334 1334 c, g dbSNP:375476174
1335 1335 a, g dbSNP:370682522
1340 1340 a, g dbSNP:568502918
1349 1349 a, c dbSNP:554648154
1358 1358 a, g dbSNP:762110744
1361 1361 a, c dbSNP:145327896
1363 1363 a, g dbSNP:376482899
1373 1373 g, t dbSNP:775401012
1375 1375 g, t dbSNP:772704366
1382 1382 a, g dbSNP:747278976
1384 1384 c, t dbSNP:200428596
1397 1397 g, t dbSNP:774793213
1399 1399 a, g dbSNP:201054854
1411 1411 a, c dbSNP:747832673
1429 1429 c, t dbSNP:774683294
1430 1430 a, c dbSNP:565855414
1432 1432 a, t dbSNP:763361168
1434 1434 a, g dbSNP:773538596
1435 1435 a, g, t dbSNP:746580819
1443 1443 a, g dbSNP:558295752
1444 1444 g, t dbSNP:771439599
1447 1447 a, c dbSNP:745839653
1448 1448 c, t dbSNP:201985170
1453 1453 -, c dbSNP:756694568
1453 1453 -, c dbSNP:778635966
1461 1461 c, t dbSNP:757229157
1465 1465 a, g dbSNP:35454564
1473 1473 g, t dbSNP:749161798
1483 1483 a, c dbSNP:777698591
1484 1484 a, c, g dbSNP:148912050
1487 1487 a, g dbSNP:779012121
1493 1493 c, g dbSNP:375240237
1500 1500 a, g dbSNP:771050195
1519 1519 c, g dbSNP:749179749
1521 1521 c, g dbSNP:777717075
1524 1524 a, g dbSNP:755827145
1526 1526 a, g dbSNP:748427537
1540 1540 c, t dbSNP:2228566
1556 1556 c, t dbSNP:758422442
1569 1569 -, aa dbSNP:755372272
1576 1576 a, g dbSNP:750478200
1591 1591 c, t dbSNP:747251984
1597 1597 a, g dbSNP:780301075
1611 1611 a, g dbSNP:373264436
1626 1626 a, g dbSNP:762692798
1628 1628 a, g dbSNP:749963403
1632 1632 c, t dbSNP:764750434
1634 1634 a, g dbSNP:201605482
1639 1639 a, c dbSNP:776579939
1643 1643 a, g, t dbSNP:760500606
1658 1658 a, g dbSNP:775260476
1664 1664 a, g dbSNP:772338077
1687 1687 c, t dbSNP:576148923
1691 1691 c, t dbSNP:202143849
1696 1696 -, c dbSNP:776659931
1696 1696 -, c dbSNP:761748258
1696 1696 c, t dbSNP:774299922
1711 1711 c, g dbSNP:771004338
1712 1712 a, g dbSNP:749782894
1714 1714 a, c, g dbSNP:182012627
1717 1717 g, t dbSNP:748592650
1721 1721 a, c dbSNP:781682527
1725 1725 a, g dbSNP:758140810
1726 1726 c, t dbSNP:750048263
1741 1741 a, c, t dbSNP:11550895
1753 1753 c, t dbSNP:372237097
1762 1762 c, t dbSNP:140697524
1763 1763 c, g dbSNP:773987348
1764 1764 a, g, t dbSNP:200949058
1772 1772 a, g dbSNP:201661697
1775 1775 a, g, t dbSNP:150020975
1778 1778 a, c dbSNP:762429171
1780 1780 a, c, g dbSNP:769009288
1787 1787 a, g dbSNP:141556170
1795 1795 g, t dbSNP:780267285
1798 1798 a, g dbSNP:770628561
1801 1801 a, g dbSNP:146113977
1810 1810 g, t dbSNP:142974512
1821 1821 g, t dbSNP:748971483
1832 1832 a, g dbSNP:200325312
1835 1835 c, g dbSNP:573879844
1845 1845 a, c dbSNP:769412872
1847 1847 a, c, g, t dbSNP:772278003
1848 1848 a, g dbSNP:754945201
1850 1850 a, g dbSNP:367889792
1863 1863 c, t dbSNP:779917331
1864 1864 a, g dbSNP:554052620
1899 1899 a, c dbSNP:200949841
1911 1911 a, c dbSNP:765616855
1913 1913 a, g dbSNP:764583970
1926 1926 a, c dbSNP:578013765
1929 1929 a, g dbSNP:762124802
1943 1943 c, g dbSNP:528002132
1947 1947 a, g dbSNP:764023683
1948 1948 a, g dbSNP:761267460
1950 1950 a, g dbSNP:775820335
1951 1951 c, t dbSNP:768037464
1952 1952 a, g dbSNP:3737821
1964 1964 a, g, t dbSNP:202153520
1972 1972 c, t dbSNP:370130857
1973 1973 a, g dbSNP:376490699
1978 1978 g, t dbSNP:767999106
1984 1984 c, t dbSNP:374571094
1985 1985 a, g dbSNP:535212284
1992 1992 c, t dbSNP:567504204
1993 1993 a, g dbSNP:745727857
2004 2004 a, g dbSNP:757079626
2009 2009 c, t dbSNP:749078666
2010 2010 a, g dbSNP:775570119
2032 2032 a, g dbSNP:541456378
2035 2035 a, g dbSNP:138949427
2037 2037 g, t dbSNP:756345160
2038 2038 a, g dbSNP:752785723
2042 2042 c, t dbSNP:531953673
2043 2043 a, g dbSNP:755487302
2045 2045 a, g dbSNP:142151614
2047 2047 c, g dbSNP:766758379
2050 2050 c, t dbSNP:375875745
2053 2053 c, g, t dbSNP:763724733
2054 2054 a, g dbSNP:760311046
2066 2066 c, t dbSNP:774879246
2068 2068 c, g dbSNP:771660985
2069 2069 c, t dbSNP:759578875
2070 2070 c, t dbSNP:774470944
2077 2077 c, t dbSNP:770970103
2092 2092 a, c dbSNP:372363712
2093 2093 c, t dbSNP:200971976
2094 2094 a, g dbSNP:201000437
2104 2104 a, g dbSNP:772895470
2106 2106 a, c dbSNP:113408847
2112 2112 a, g dbSNP:769578991
2113 2113 c, g, t dbSNP:781428852
2114 2114 a, g dbSNP:768840439
2129 2129 c, t dbSNP:747162216
2136 2136 a, c dbSNP:780045313
2140 2140 a, g dbSNP:758844390
2152 2152 a, g dbSNP:750896997
2154 2154 a, c dbSNP:779177140
2161 2161 g, t dbSNP:757681519
2162 2162 c, t dbSNP:754234353
2163 2163 a, g dbSNP:199850925
2172 2172 c, t dbSNP:754673796
2173 2173 g, t dbSNP:142867960
2179 2179 c, g dbSNP:765856534
2182 2182 c, t dbSNP:762817478
2183 2183 a, g dbSNP:773159349
2191 2191 a, g dbSNP:765050254
2192 2192 a, c dbSNP:140041506
2193 2193 c, t dbSNP:150687987
2194 2194 a, g dbSNP:144539022
2196 2196 a, g dbSNP:747178798
2204 2204 c, g dbSNP:775572033
2212 2212 c, t dbSNP:2229826
2213 2213 a, g dbSNP:569464393
2229 2229 c, t dbSNP:779524161
2230 2230 a, g dbSNP:148008235
2231 2231 a, g dbSNP:749736976
2233 2233 a, c dbSNP:778216645
2240 2240 c, t dbSNP:754688437
2246 2246 c, t dbSNP:199547057
2247 2247 a, g dbSNP:199897562
2248 2248 c, t dbSNP:757963762
2261 2261 a, g dbSNP:749873890
2262 2262 a, g dbSNP:765273618
2265 2265 a, c dbSNP:761675654
2269 2269 c, t dbSNP:115675008
2270 2270 a, g dbSNP:201847956
2277 2277 c, t dbSNP:760921400
2287 2287 a, c dbSNP:775823584
2291 2291 c, t dbSNP:764864718
2300 2300 a, c, g dbSNP:746019124
2318 2318 c, t dbSNP:774289715
2319 2319 a, g dbSNP:547105794
2323 2323 a, g dbSNP:749753328
2329 2329 a, c dbSNP:778302764
2342 2342 -, g dbSNP:35948159
2348 2348 a, g dbSNP:553963794
2381 2381 c, t dbSNP:534465543
2392 2392 c, t dbSNP:114634369
2393 2393 c, t dbSNP:564283453
2403 2403 c, t dbSNP:2229827
2482 2482 a, c dbSNP:137890492
2498 2498 a, g dbSNP:536500598
2503 2503 a, g dbSNP:561657830
2517 2517 a, g dbSNP:41480445
2532 2532 c, t dbSNP:146173817
2544 2544 c, t dbSNP:187788913
2548 2548 a, g dbSNP:545871447
2558 2558 c, t dbSNP:774784075
2559 2559 a, g dbSNP:771268496
2593 2593 a, t dbSNP:41466547
2595 2595 c, t dbSNP:2747510
2635 2635 a, g dbSNP:558294493
2644 2644 a, g dbSNP:538062384
2650 2650 a, c dbSNP:773649280
2651 2651 a, g dbSNP:548912125
2724 2724 c, t dbSNP:531591616
2752 2752 c, g dbSNP:141640918
2757 2757 acc, gct dbSNP:386630594
2777 2777 c, t dbSNP:556090205
2780 2780 a, c dbSNP:748640174
2800 2800 -, c dbSNP:141076024
2801 2801 -, a dbSNP:200890876
2824 2824 a, g dbSNP:75291055
2842 2842 a, g dbSNP:138560646
2859 2859 c, t dbSNP:143152709
2861 2861 a, c dbSNP:771654481
2875 2875 c, t dbSNP:539893767
2903 2903 c, g dbSNP:767779846

Target ORF information:

RefSeq Version XM_011540714
Organism Homo sapiens (human)
Definition PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_011540714

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
ATGGCCGCCG CTACGGCCTC CCCCCGCAGC CTCCTTGTTC TCCTCCAGGT GGTAGTGCTC 
GCTCTGGCGC AGATTAGAGG TCCACCGGGA GAGCGGGGCC CCCCGGGTCC CCCGGGACCG
CCGGGAGTGC CTGGATCCGA CGGCATCGAC GGTGACAATG GGCCCCCTGG AAAAGCTGGC
CCTCCGGGAC CCAAGGGCGA GCCTGGCAAA GCTGGGCCAG ATGGGCCAGA CGGGAAGCCC
GGGATTGATG GTTTAACTGG AGCCAAGGGG GAGCCTGGCC CCATGGGGAT CCCTGGAGTC
AAGGGCCAGC CCGGGCTTCC TGGTCCTCCT GGCCTTCCGG GCCCTGGTTT TGCTGGACCT
CCTGGGCCTC CTGGACCTGT TGGCCTCCCT GGTGAGATTG GAATCCGAGG CCCCAAGGGG
GACCCTGGAC CAGATGGACC ATCGGGGCCC CCAGGACCCC CTGGGAAACC TGGTCGCCCG
GGAACCATCC AGGGTCTGGA AGGCAGTGCG GATTTCCTGG TGAGAGACGA GTGTCCAACC
AACTGTCCAC CCGGAATGAA AGGTCCCCCA GGGCTGCAGG GAGTGAAGGG GCATGCGGGC
AAACGCGGGA TTCTGGGTGA TCCTGGCCAC CAGGGGAAGC CGGGTCCCAA GGGAGATGTG
GGTGCCTCTG GAGAGCAAGG CATCCCTGGA CCACCGGGTC CCCAGGGCAT CAGGGGCTAC
CCAGGCATGG CAGGGCCCAA GGGAGAGACG GGCCCTCATG GATATAAAGG CATGGTGGGC
GCTATCGGTG CCACTGGGCC ACCGGGTGAG GAAGGTCCTA GGGGACCGCC AGGCCGAGCT
GGGGAGAAGG GTGACGAGGG CAGCCCAGGT ATTCGTGGAC CCCAGGGGAT CACAGGCCCG
AAAGGAGCAA CGGGCCCCCC AGGCATCAAC GGCAAGGATG GGACCCCAGG CACGCCTGGC
ATGAAGGGCA GTGCAGGACA GGCGGGACAG CCCGGAAGTC CAGGCCACCA GGGCCTAGCG
GGTGTGCCAG GCCAGCCTGG GACAAAAGGA GGCCCTGGAG ACCAGGGTGA GCCGGGCCCG
CAGGGCCTTC CTGGATTCTC TGGTCCCCCT GGGAAAGAGG GAGAGCCAGG GCCTCGAGGA
GAAATTGGTC CCCAGGGCAT CATGGGACAG AAGGGTGACC AAGGCGAGAG GGGTCCAGTG
GGGCAACCAG GCCCTCAGGG AAGGCAGGGC CCTAAGGGGG AGCAGGGCCC CCCCGGAATT
CCAGGGCCCC AAGGCTTGCC AGGCGTCAAA GGAGACAAGG GCTCCCCAGG GAAGACCGGG
CCCCGCGGCA AAGTGGGTGA CCCAGGGGTG GCCGGCCTCC CCGGAGAGAA AGGCGAGAAG
GGCGAGTCCG GCGAGCCGGG GCCCAAGGGA CAGCAAGGAG TACGTGGAGA ACCCGGCTAC
CCTGGCCCCA GCGGGGATGC GGGCGCCCCA GGGGTTCAGG GCTACCCTGG TCCCCCCGGC
CCTCGAGGAC TGGCCGGGAA CCGAGGCGTG CCAGGACAGC CCGGGAGACA GGGCGTGGAG
GGCCGGGATG CCACTGACCA GCACATCGTG GATGTGGCGC TGAAGATGCT GCAAGAGCAA
CTGGCAGAGG TCGCCGTGAG TGCCAAGCGG GAAGCCCTGG GTGCGGTGGG CATGATGGGT
CCTCCAGGAC CTCCTGGGCC CCCTGGGTAC CCAGGCAAGC AGGGCCCCCA TGGGCACCCT
GGCCCTCGGG GCGTTCCTGG CATCGTGGGA GCCGTGGGTC AGATCGGCAA CACGGGGCCC
AAGGGAAAAC GTGGAGAGAA GGGTGATCCA GGAGAAGTGG GACGGGGGCA CCCCGGGATG
CCTGGGCCCC CAGGGATCCC AGGACTCCCT GGCCGGCCTG GCCAGGCAAT CAACGGCAAG
GATGGAGATC GAGGGTCCCC AGGGGCTCCA GGAGAGGCAG GTCGACCTGG CCTGCCAGGC
CCCGTGGGGC TGCCGGGCTT CTGTGAACCT GCCGCCTGCC TTGGAGCTTC GGCCTATGCC
TCTGCCCGCC TTACAGAGCC TGGATCCATC AAGGGGCCTTT GA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OHu24811D
Sequence Information ORF Nucleotide Sequence (Length: 2070bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product collagen alpha-2(IX) chain isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_032977.10) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 12, 2015 this sequence version replaced gi:578798413. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
ATGGCCGCCG CTACGGCCTC CCCCCGCAGC CTCCTTGTTC TCCTCCAGGT GGTAGTGCTC 
GCTCTGGCGC AGATTAGAGG TCCACCGGGA GAGCGGGGCC CCCCGGGTCC CCCGGGACCG
CCGGGAGTGC CTGGATCCGA CGGCATCGAC GGTGACAATG GGCCCCCTGG AAAAGCTGGC
CCTCCGGGAC CCAAGGGCGA GCCTGGCAAA GCTGGGCCAG ATGGGCCAGA CGGGAAGCCC
GGGATTGATG GTTTAACTGG AGCCAAGGGG GAGCCTGGCC CCATGGGGAT CCCTGGAGTC
AAGGGCCAGC CCGGGCTTCC TGGTCCTCCT GGCCTTCCGG GCCCTGGTTT TGCTGGACCT
CCTGGGCCTC CTGGACCTGT TGGCCTCCCT GGTGAGATTG GAATCCGAGG CCCCAAGGGG
GACCCTGGAC CAGATGGACC ATCGGGGCCC CCAGGACCCC CTGGGAAACC TGGTCGCCCG
GGAACCATCC AGGGTCTGGA AGGCAGTGCG GATTTCCTGT GTCCAACCAA CTGTCCACCC
GGAATGAAAG GTCCCCCAGG GCTGCAGGGA GTGAAGGGGC ATGCGGGCAA ACGCGGGATT
CTGGGTGATC CTGGCCACCA GGGGAAGCCG GGTCCCAAGG GAGATGTGGG TGCCTCTGGA
GAGCAAGGCA TCCCTGGACC ACCGGGTCCC CAGGGCATCA GGGGCTACCC AGGCATGGCA
GGGCCCAAGG GAGAGACGGG CCCTCATGGA TATAAAGGCA TGGTGGGCGC TATCGGTGCC
ACTGGGCCAC CGGGTGAGGA AGGTCCTAGG GGACCGCCAG GCCGAGCTGG GGAGAAGGGT
GACGAGGGCA GCCCAGGTAT TCGTGGACCC CAGGGGATCA CAGGCCCGAA AGGAGCAACG
GGCCCCCCAG GCATCAACGG CAAGGATGGG ACCCCAGGCA CGCCTGGCAT GAAGGGCAGT
GCAGGACAGG CGGGACAGCC CGGAAGTCCA GGCCACCAGG GCCTAGCGGG TGTGCCAGGC
CAGCCTGGGA CAAAAGGAGG CCCTGGAGAC CAGGGTGAGC CGGGCCCGCA GGGCCTTCCT
GGATTCTCTG GTCCCCCTGG GAAAGAGGGA GAGCCAGGGC CTCGAGGAGA AATTGGTCCC
CAGGGCATCA TGGGACAGAA GGGTGACCAA GGCGAGAGGG GTCCAGTGGG GCAACCAGGC
CCTCAGGGAA GGCAGGGCCC TAAGGGGGAG CAGGGCCCCC CCGGAATTCC AGGGCCCCAA
GGCTTGCCAG GCGTCAAAGG AGACAAGGGC TCCCCAGGGA AGACCGGGCC CCGCGGCAAA
GTGGGTGACC CAGGGGTGGC CGGCCTCCCC GGAGAGAAAG GCGAGAAGGG CGAGTCCGGC
GAGCCGGGGC CCAAGGGACA GCAAGGAGTA CGTGGAGAAC CCGGCTACCC TGGCCCCAGC
GGGGATGCGG GCGCCCCAGG GGTTCAGGGC TACCCTGGTC CCCCCGGCCC TCGAGGACTG
GCCGGGAACC GAGGCGTGCC AGGACAGCCC GGGAGACAGG GCGTGGAGGG CCGGGATGCC
ACTGACCAGC ACATCGTGGA TGTGGCGCTG AAGATGCTGC AAGAGCAACT GGCAGAGGTC
GCCGTGAGTG CCAAGCGGGA AGCCCTGGGT GCGGTGGGCA TGATGGGTCC TCCAGGACCT
CCTGGGCCCC CTGGGTACCC AGGCAAGCAG GGCCCCCATG GGCACCCTGG CCCTCGGGGC
GTTCCTGGCA TCGTGGGAGC CGTGGGTCAG ATCGGCAACA CGGGGCCCAA GGGAAAACGT
GGAGAGAAGG GTGATCCAGG AGAAGTGGGA CGGGGGCACC CCGGGATGCC TGGGCCCCCA
GGGATCCCAG GACTCCCTGG CCGGCCTGGC CAGGCAATCA ACGGCAAGGA TGGAGATCGA
GGGTCCCCAG GGGCTCCAGG AGAGGCAGGT CGACCTGGCC TGCCAGGCCC CGTGGGGCTG
CCGGGCTTCT GTGAACCTGC CGCCTGCCTT GGAGCTTCGG CCTATGCCTC TGCCCGCCTT
ACAGAGCCTG GATCCATCAA GGGGCCTTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_006710428.1
CDS197..2266
Misc Feature(1)971..1144(+)
Misc Feature(2)1178..1354(+)
Misc Feature(3)1277..1438(+)
Misc Feature(4)1472..1645(+)
Translation
Position Chain Variation Link
16 16 a, g dbSNP:367815748
20 20 a, t dbSNP:574096208
62 62 a, c dbSNP:2747521
107 107 c, t dbSNP:562061195
132 132 c, t dbSNP:532226884
145 145 a, c, t dbSNP:755379888
146 146 g, t dbSNP:758532501
151 151 c, t dbSNP:745890554
153 153 c, t dbSNP:779117955
154 154 a, g dbSNP:373454857
155 155 c, t dbSNP:754394090
156 156 c, g dbSNP:368737564
159 159 c, t dbSNP:756376330
160 160 c, g dbSNP:376809219
165 165 c, t dbSNP:372337925
166 166 a, g dbSNP:370001266
170 170 a, c dbSNP:375579300
171 171 -, c dbSNP:765953379
171 171 c, g dbSNP:764721121
172 172 a, g dbSNP:761794305
186 186 a, c dbSNP:776490605
186 186 -, c dbSNP:757956892
190 190 c, g dbSNP:768499491
197 197 a, g dbSNP:746737931
203 203 a, g dbSNP:200744276
206 206 a, g dbSNP:201243011
213 213 c, g dbSNP:746060830
216 216 c, t dbSNP:779204017
217 217 c, g dbSNP:757401979
218 218 c, g dbSNP:140795858
221 221 -, c dbSNP:754420454
221 221 c, g dbSNP:749827333
226 226 c, t dbSNP:368181488
227 227 c, t dbSNP:74506933
236 236 a, c dbSNP:753051609
239 239 c, t dbSNP:767890705
240 240 -, tcc dbSNP:764658749
249 249 c, t dbSNP:758051363
260 260 c, g dbSNP:750061947
267 267 a, t dbSNP:764737673
276 276 g, t dbSNP:753341843
284 284 a, g dbSNP:193238892
287 287 a, g dbSNP:760465302
291 291 a, g dbSNP:200424850
300 300 -, c dbSNP:761125486
301 301 g, t dbSNP:752669612
315 315 -, c dbSNP:147470756
320 320 a, g dbSNP:754348378
322 322 a, g dbSNP:759339883
327 327 c, g dbSNP:774746956
334 334 c, t dbSNP:374210090
348 348 g, t dbSNP:755595666
350 350 a, g dbSNP:752583449
355 355 c, t dbSNP:754221348
363 363 c, t dbSNP:377589006
381 381 c, t dbSNP:767523458
390 390 a, g dbSNP:756634659
394 394 c, t dbSNP:748908933
395 395 a, g dbSNP:376234058
413 413 c, t dbSNP:375150574
414 414 a, c dbSNP:747646622
417 417 a, t dbSNP:565528937
418 418 c, t dbSNP:143528915
426 426 -, tgggccaga dbSNP:767763762
426 426 a, c, g dbSNP:200737977
427 427 a, c, t dbSNP:372936826
428 428 a, g dbSNP:376722979
436 436 c, t dbSNP:372016237
437 437 a, g dbSNP:776728239
487 487 a, c dbSNP:778538501
495 495 a, t dbSNP:757569443
500 500 a, g dbSNP:776441743
508 508 c, t dbSNP:144072834
509 509 a, g dbSNP:760368550
510 510 a, g dbSNP:775128466
522 522 c, t dbSNP:771473898
526 526 c, t dbSNP:555650940
529 529 c, g dbSNP:770620030
531 531 g, t dbSNP:143008970
532 532 a, t dbSNP:770793938
534 534 c, t dbSNP:763825965
535 535 a, g dbSNP:201859264
538 538 c, t dbSNP:781228778
539 539 c, g dbSNP:755106661
548 548 c, g dbSNP:747104088
549 549 c, g dbSNP:780149118
557 557 a, c dbSNP:555035046
563 563 c, t dbSNP:369407377
570 570 c, g dbSNP:779524087
572 572 a, c dbSNP:146903539
576 576 c, t dbSNP:200808068
586 586 c, t dbSNP:754207553
594 594 c, t dbSNP:148136289
599 599 a, g dbSNP:754653233
603 603 a, g dbSNP:751212530
612 612 a, g dbSNP:765888901
613 613 a, g dbSNP:762408011
624 624 a, g dbSNP:756445062
636 636 a, c dbSNP:751242599
637 637 a, g dbSNP:779631674
639 639 c, t dbSNP:745373699
640 640 a, g dbSNP:749975211
643 643 a, g dbSNP:764719071
644 644 a, c, t dbSNP:753748970
651 651 a, g dbSNP:763798270
654 654 c, t dbSNP:77937237
656 656 c, t dbSNP:375685025
666 666 a, c dbSNP:775879938
671 671 c, g dbSNP:777035204
672 672 a, g dbSNP:143965571
676 676 a, g dbSNP:745522018
680 680 a, t dbSNP:553645941
693 693 c, t dbSNP:756743515
700 700 a, c dbSNP:748881230
705 705 c, t dbSNP:146672981
709 709 a, t dbSNP:756191230
712 712 c, t dbSNP:201819837
716 716 c, t dbSNP:751408782
727 727 c, t dbSNP:563257155
730 730 c, t dbSNP:758704701
734 734 a, c dbSNP:750549213
736 736 c, t dbSNP:756880415
737 737 a, g dbSNP:761837402
740 740 a, g dbSNP:113549021
745 745 a, g dbSNP:764636136
749 749 c, g dbSNP:761059218
753 753 -, cc dbSNP:749888464
758 758 a, c dbSNP:139455364
764 764 g, t dbSNP:554314188
767 767 a, g dbSNP:369700719
772 772 a, g dbSNP:762681124
775 775 a, g dbSNP:757450923
780 780 a, c, t dbSNP:764157850
781 781 a, g dbSNP:756707028
782 782 a, g dbSNP:753088253
788 788 c, t dbSNP:767929481
789 789 a, g dbSNP:759781792
790 790 c, t dbSNP:368775817
808 808 -, cct dbSNP:778437735
811 811 a, c dbSNP:765020647
818 818 c, g dbSNP:761552379
825 825 c, t dbSNP:199831035
840 840 a, g dbSNP:761570761
844 844 c, g dbSNP:776355717
855 855 c, g dbSNP:774328643
858 858 a, g dbSNP:763686661
863 863 a, g dbSNP:760052148
878 878 c, t dbSNP:370064150
879 879 c, t dbSNP:751487740
880 880 a, g dbSNP:147480957
884 884 c, t dbSNP:763700283
885 885 c, t dbSNP:760341544
890 890 a, g dbSNP:139013993
895 895 c, t dbSNP:767043817
901 901 c, t dbSNP:529508967
907 907 a, g dbSNP:759486624
910 910 c, g, t dbSNP:770743976
920 920 c, t dbSNP:762688830
927 927 a, g dbSNP:773038976
933 933 c, t dbSNP:2228565
937 937 a, c dbSNP:747133313
938 938 a, c, g dbSNP:772771389
943 943 c, g, t dbSNP:747499674
955 955 c, t dbSNP:757575585
959 959 a, g dbSNP:747788076
964 964 c, t dbSNP:150444024
965 965 a, g dbSNP:369221204
968 968 a, g dbSNP:751113614
970 970 c, t dbSNP:765872341
971 971 a, g dbSNP:148362133
987 987 c, t dbSNP:534724125
988 988 a, g dbSNP:764969929
994 994 a, g dbSNP:757111279
998 998 a, g dbSNP:753732622
999 999 a, g dbSNP:763966106
1011 1011 c, t dbSNP:760992606
1012 1012 a, g, t dbSNP:767738040
1019 1019 c, t dbSNP:759612204
1020 1020 a, g dbSNP:752496710
1027 1027 a, g dbSNP:376517036
1028 1028 a, g dbSNP:561050736
1039 1039 c, t dbSNP:140305893
1040 1040 a, g dbSNP:767307495
1041 1041 a, c dbSNP:770075367
1042 1042 a, g dbSNP:746692571
1049 1049 c, t dbSNP:762209791
1058 1058 c, t dbSNP:776949373
1059 1059 a, g dbSNP:771823937
1071 1071 a, g dbSNP:745492026
1075 1075 c, g dbSNP:371503621
1080 1080 c, g dbSNP:770282352
1083 1083 c, t dbSNP:749271511
1084 1084 a, g dbSNP:376866320
1095 1095 c, t dbSNP:756099117
1096 1096 a, g dbSNP:752584833
1098 1098 a, g dbSNP:372191928
1101 1101 c, g, t dbSNP:369110014
1105 1105 a, c dbSNP:747275231
1114 1114 c, t dbSNP:376991606
1115 1115 a, g dbSNP:184896618
1120 1120 a, g dbSNP:560574843
1123 1123 g, t dbSNP:200290031
1129 1129 a, c dbSNP:757772360
1137 1137 c, t dbSNP:754230024
1138 1138 a, g dbSNP:144615318
1151 1151 a, g dbSNP:758677057
1165 1165 a, g dbSNP:746031866
1167 1167 c, t dbSNP:372004899
1168 1168 a, g dbSNP:369479941
1172 1172 ca, tg dbSNP:137853213
1172 1172 a, c, t dbSNP:12077871
1173 1173 a, c, g, t dbSNP:2228564
1177 1177 a, c, t dbSNP:140834689
1178 1178 a, g dbSNP:199733570
1182 1182 c, g dbSNP:772935733
1191 1191 a, c dbSNP:555032997
1199 1199 c, g dbSNP:2228567
1201 1201 a, g dbSNP:761276112
1203 1203 a, c, t dbSNP:150075912
1204 1204 a, g dbSNP:760647943
1206 1206 c, g dbSNP:199502479
1209 1209 c, t dbSNP:751909501
1214 1214 a, g dbSNP:753194894
1219 1219 a, g dbSNP:781695990
1221 1221 c, g dbSNP:755357677
1237 1237 c, t dbSNP:138882727
1245 1245 a, g dbSNP:765020486
1250 1250 g, t dbSNP:755507989
1251 1251 g, t dbSNP:752033124
1257 1257 c, t dbSNP:201772619
1258 1258 a, g dbSNP:6676013
1259 1259 a, g dbSNP:138592408
1260 1260 g, t dbSNP:763541825
1263 1263 c, g dbSNP:760181989
1264 1264 a, g dbSNP:752181922
1283 1283 c, t dbSNP:113880922
1284 1284 c, g dbSNP:767484378
1287 1287 c, g dbSNP:759466010
1289 1289 c, t dbSNP:774190227
1290 1290 a, c dbSNP:777747401
1308 1308 a, g dbSNP:751436539
1319 1319 c, g dbSNP:375476174
1320 1320 a, g dbSNP:370682522
1325 1325 a, g dbSNP:568502918
1334 1334 a, c dbSNP:554648154
1343 1343 a, g dbSNP:762110744
1346 1346 a, c dbSNP:145327896
1348 1348 a, g dbSNP:376482899
1358 1358 g, t dbSNP:775401012
1360 1360 g, t dbSNP:772704366
1367 1367 a, g dbSNP:747278976
1369 1369 c, t dbSNP:200428596
1382 1382 g, t dbSNP:774793213
1384 1384 a, g dbSNP:201054854
1396 1396 a, c dbSNP:747832673
1414 1414 c, t dbSNP:774683294
1415 1415 a, c dbSNP:565855414
1417 1417 a, t dbSNP:763361168
1419 1419 a, g dbSNP:773538596
1420 1420 a, g, t dbSNP:746580819
1428 1428 a, g dbSNP:558295752
1429 1429 g, t dbSNP:771439599
1432 1432 a, c dbSNP:745839653
1433 1433 c, t dbSNP:201985170
1438 1438 -, c dbSNP:756694568
1438 1438 -, c dbSNP:778635966
1446 1446 c, t dbSNP:757229157
1450 1450 a, g dbSNP:35454564
1458 1458 g, t dbSNP:749161798
1468 1468 a, c dbSNP:777698591
1469 1469 a, c, g dbSNP:148912050
1472 1472 a, g dbSNP:779012121
1478 1478 c, g dbSNP:375240237
1485 1485 a, g dbSNP:771050195
1504 1504 c, g dbSNP:749179749
1506 1506 c, g dbSNP:777717075
1509 1509 a, g dbSNP:755827145
1511 1511 a, g dbSNP:748427537
1525 1525 c, t dbSNP:2228566
1541 1541 c, t dbSNP:758422442
1554 1554 -, aa dbSNP:755372272
1561 1561 a, g dbSNP:750478200
1576 1576 c, t dbSNP:747251984
1582 1582 a, g dbSNP:780301075
1596 1596 a, g dbSNP:373264436
1611 1611 a, g dbSNP:762692798
1613 1613 a, g dbSNP:749963403
1617 1617 c, t dbSNP:764750434
1619 1619 a, g dbSNP:201605482
1624 1624 a, c dbSNP:776579939
1628 1628 a, g, t dbSNP:760500606
1643 1643 a, g dbSNP:775260476
1649 1649 a, g dbSNP:772338077
1672 1672 c, t dbSNP:576148923
1676 1676 c, t dbSNP:202143849
1681 1681 -, c dbSNP:776659931
1681 1681 -, c dbSNP:761748258
1681 1681 c, t dbSNP:774299922
1696 1696 c, g dbSNP:771004338
1697 1697 a, g dbSNP:749782894
1699 1699 a, c, g dbSNP:182012627
1702 1702 g, t dbSNP:748592650
1706 1706 a, c dbSNP:781682527
1710 1710 a, g dbSNP:758140810
1711 1711 c, t dbSNP:750048263
1726 1726 a, c, t dbSNP:11550895
1738 1738 c, t dbSNP:372237097
1747 1747 c, t dbSNP:140697524
1748 1748 c, g dbSNP:773987348
1749 1749 a, g, t dbSNP:200949058
1757 1757 a, g dbSNP:201661697
1760 1760 a, g, t dbSNP:150020975
1763 1763 a, c dbSNP:762429171
1765 1765 a, c, g dbSNP:769009288
1772 1772 a, g dbSNP:141556170
1780 1780 g, t dbSNP:780267285
1783 1783 a, g dbSNP:770628561
1786 1786 a, g dbSNP:146113977
1795 1795 g, t dbSNP:142974512
1806 1806 g, t dbSNP:748971483
1817 1817 a, g dbSNP:200325312
1820 1820 c, g dbSNP:573879844
1830 1830 a, c dbSNP:769412872
1832 1832 a, c, g, t dbSNP:772278003
1833 1833 a, g dbSNP:754945201
1835 1835 a, g dbSNP:367889792
1848 1848 c, t dbSNP:779917331
1849 1849 a, g dbSNP:554052620
1884 1884 a, c dbSNP:200949841
1896 1896 a, c dbSNP:765616855
1898 1898 a, g dbSNP:764583970
1911 1911 a, c dbSNP:578013765
1914 1914 a, g dbSNP:762124802
1928 1928 c, g dbSNP:528002132
1932 1932 a, g dbSNP:764023683
1933 1933 a, g dbSNP:761267460
1935 1935 a, g dbSNP:775820335
1936 1936 c, t dbSNP:768037464
1937 1937 a, g dbSNP:3737821
1949 1949 a, g, t dbSNP:202153520
1957 1957 c, t dbSNP:370130857
1958 1958 a, g dbSNP:376490699
1963 1963 g, t dbSNP:767999106
1969 1969 c, t dbSNP:374571094
1970 1970 a, g dbSNP:535212284
1977 1977 c, t dbSNP:567504204
1978 1978 a, g dbSNP:745727857
1989 1989 a, g dbSNP:757079626
1994 1994 c, t dbSNP:749078666
1995 1995 a, g dbSNP:775570119
2017 2017 a, g dbSNP:541456378
2020 2020 a, g dbSNP:138949427
2022 2022 g, t dbSNP:756345160
2023 2023 a, g dbSNP:752785723
2027 2027 c, t dbSNP:531953673
2028 2028 a, g dbSNP:755487302
2030 2030 a, g dbSNP:142151614
2032 2032 c, g dbSNP:766758379
2035 2035 c, t dbSNP:375875745
2038 2038 c, g, t dbSNP:763724733
2039 2039 a, g dbSNP:760311046
2051 2051 c, t dbSNP:774879246
2053 2053 c, g dbSNP:771660985
2054 2054 c, t dbSNP:759578875
2055 2055 c, t dbSNP:774470944
2062 2062 c, t dbSNP:770970103
2077 2077 a, c dbSNP:372363712
2078 2078 c, t dbSNP:200971976
2079 2079 a, g dbSNP:201000437
2089 2089 a, g dbSNP:772895470
2091 2091 a, c dbSNP:113408847
2097 2097 a, g dbSNP:769578991
2098 2098 c, g, t dbSNP:781428852
2099 2099 a, g dbSNP:768840439
2114 2114 c, t dbSNP:747162216
2121 2121 a, c dbSNP:780045313
2125 2125 a, g dbSNP:758844390
2137 2137 a, g dbSNP:750896997
2139 2139 a, c dbSNP:779177140
2146 2146 g, t dbSNP:757681519
2147 2147 c, t dbSNP:754234353
2148 2148 a, g dbSNP:199850925
2157 2157 c, t dbSNP:754673796
2158 2158 g, t dbSNP:142867960
2164 2164 c, g dbSNP:765856534
2167 2167 c, t dbSNP:762817478
2168 2168 a, g dbSNP:773159349
2176 2176 a, g dbSNP:765050254
2177 2177 a, c dbSNP:140041506
2178 2178 c, t dbSNP:150687987
2179 2179 a, g dbSNP:144539022
2181 2181 a, g dbSNP:747178798
2189 2189 c, g dbSNP:775572033
2197 2197 c, t dbSNP:2229826
2198 2198 a, g dbSNP:569464393
2214 2214 c, t dbSNP:779524161
2215 2215 a, g dbSNP:148008235
2216 2216 a, g dbSNP:749736976
2218 2218 a, c dbSNP:778216645
2225 2225 c, t dbSNP:754688437
2231 2231 c, t dbSNP:199547057
2232 2232 a, g dbSNP:199897562
2233 2233 c, t dbSNP:757963762
2246 2246 a, g dbSNP:749873890
2247 2247 a, g dbSNP:765273618
2250 2250 a, c dbSNP:761675654
2254 2254 c, t dbSNP:115675008
2255 2255 a, g dbSNP:201847956
2262 2262 c, t dbSNP:760921400
2272 2272 a, c dbSNP:775823584
2276 2276 c, t dbSNP:764864718
2285 2285 a, c, g dbSNP:746019124
2303 2303 c, t dbSNP:774289715
2304 2304 a, g dbSNP:547105794
2308 2308 a, g dbSNP:749753328
2314 2314 a, c dbSNP:778302764
2327 2327 -, g dbSNP:35948159
2333 2333 a, g dbSNP:553963794
2366 2366 c, t dbSNP:534465543
2377 2377 c, t dbSNP:114634369
2378 2378 c, t dbSNP:564283453
2388 2388 c, t dbSNP:2229827
2467 2467 a, c dbSNP:137890492
2483 2483 a, g dbSNP:536500598
2488 2488 a, g dbSNP:561657830
2502 2502 a, g dbSNP:41480445
2517 2517 c, t dbSNP:146173817
2529 2529 c, t dbSNP:187788913
2533 2533 a, g dbSNP:545871447
2543 2543 c, t dbSNP:774784075
2544 2544 a, g dbSNP:771268496
2578 2578 a, t dbSNP:41466547
2580 2580 c, t dbSNP:2747510
2620 2620 a, g dbSNP:558294493
2629 2629 a, g dbSNP:538062384
2635 2635 a, c dbSNP:773649280
2636 2636 a, g dbSNP:548912125
2709 2709 c, t dbSNP:531591616
2737 2737 c, g dbSNP:141640918
2742 2742 acc, gct dbSNP:386630594
2762 2762 c, t dbSNP:556090205
2765 2765 a, c dbSNP:748640174
2785 2785 -, c dbSNP:141076024
2786 2786 -, a dbSNP:200890876
2809 2809 a, g dbSNP:75291055
2827 2827 a, g dbSNP:138560646
2844 2844 c, t dbSNP:143152709
2846 2846 a, c dbSNP:771654481
2860 2860 c, t dbSNP:539893767
2888 2888 c, g dbSNP:767779846

Target ORF information:

RefSeq Version XM_006710365
Organism Homo sapiens (human)
Definition PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_006710365

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
ATGGCCGCCG CTACGGCCTC CCCCCGCAGC CTCCTTGTTC TCCTCCAGGT GGTAGTGCTC 
GCTCTGGCGC AGATTAGAGG TCCACCGGGA GAGCGGGGCC CCCCGGGTCC CCCGGGACCG
CCGGGAGTGC CTGGATCCGA CGGCATCGAC GGTGACAATG GGCCCCCTGG AAAAGCTGGC
CCTCCGGGAC CCAAGGGCGA GCCTGGCAAA GCTGGGCCAG ATGGGCCAGA CGGGAAGCCC
GGGATTGATG GTTTAACTGG AGCCAAGGGG GAGCCTGGCC CCATGGGGAT CCCTGGAGTC
AAGGGCCAGC CCGGGCTTCC TGGTCCTCCT GGCCTTCCGG GCCCTGGTTT TGCTGGACCT
CCTGGGCCTC CTGGACCTGT TGGCCTCCCT GGTGAGATTG GAATCCGAGG CCCCAAGGGG
GACCCTGGAC CAGATGGACC ATCGGGGCCC CCAGGACCCC CTGGGAAACC TGGTCGCCCG
GGAACCATCC AGGGTCTGGA AGGCAGTGCG GATTTCCTGT GTCCAACCAA CTGTCCACCC
GGAATGAAAG GTCCCCCAGG GCTGCAGGGA GTGAAGGGGC ATGCGGGCAA ACGCGGGATT
CTGGGTGATC CTGGCCACCA GGGGAAGCCG GGTCCCAAGG GAGATGTGGG TGCCTCTGGA
GAGCAAGGCA TCCCTGGACC ACCGGGTCCC CAGGGCATCA GGGGCTACCC AGGCATGGCA
GGGCCCAAGG GAGAGACGGG CCCTCATGGA TATAAAGGCA TGGTGGGCGC TATCGGTGCC
ACTGGGCCAC CGGGTGAGGA AGGTCCTAGG GGACCGCCAG GCCGAGCTGG GGAGAAGGGT
GACGAGGGCA GCCCAGGTAT TCGTGGACCC CAGGGGATCA CAGGCCCGAA AGGAGCAACG
GGCCCCCCAG GCATCAACGG CAAGGATGGG ACCCCAGGCA CGCCTGGCAT GAAGGGCAGT
GCAGGACAGG CGGGACAGCC CGGAAGTCCA GGCCACCAGG GCCTAGCGGG TGTGCCAGGC
CAGCCTGGGA CAAAAGGAGG CCCTGGAGAC CAGGGTGAGC CGGGCCCGCA GGGCCTTCCT
GGATTCTCTG GTCCCCCTGG GAAAGAGGGA GAGCCAGGGC CTCGAGGAGA AATTGGTCCC
CAGGGCATCA TGGGACAGAA GGGTGACCAA GGCGAGAGGG GTCCAGTGGG GCAACCAGGC
CCTCAGGGAA GGCAGGGCCC TAAGGGGGAG CAGGGCCCCC CCGGAATTCC AGGGCCCCAA
GGCTTGCCAG GCGTCAAAGG AGACAAGGGC TCCCCAGGGA AGACCGGGCC CCGCGGCAAA
GTGGGTGACC CAGGGGTGGC CGGCCTCCCC GGAGAGAAAG GCGAGAAGGG CGAGTCCGGC
GAGCCGGGGC CCAAGGGACA GCAAGGAGTA CGTGGAGAAC CCGGCTACCC TGGCCCCAGC
GGGGATGCGG GCGCCCCAGG GGTTCAGGGC TACCCTGGTC CCCCCGGCCC TCGAGGACTG
GCCGGGAACC GAGGCGTGCC AGGACAGCCC GGGAGACAGG GCGTGGAGGG CCGGGATGCC
ACTGACCAGC ACATCGTGGA TGTGGCGCTG AAGATGCTGC AAGAGCAACT GGCAGAGGTC
GCCGTGAGTG CCAAGCGGGA AGCCCTGGGT GCGGTGGGCA TGATGGGTCC TCCAGGACCT
CCTGGGCCCC CTGGGTACCC AGGCAAGCAG GGCCCCCATG GGCACCCTGG CCCTCGGGGC
GTTCCTGGCA TCGTGGGAGC CGTGGGTCAG ATCGGCAACA CGGGGCCCAA GGGAAAACGT
GGAGAGAAGG GTGATCCAGG AGAAGTGGGA CGGGGGCACC CCGGGATGCC TGGGCCCCCA
GGGATCCCAG GACTCCCTGG CCGGCCTGGC CAGGCAATCA ACGGCAAGGA TGGAGATCGA
GGGTCCCCAG GGGCTCCAGG AGAGGCAGGT CGACCTGGCC TGCCAGGCCC CGTGGGGCTG
CCGGGCTTCT GTGAACCTGC CGCCTGCCTT GGAGCTTCGG CCTATGCCTC TGCCCGCCTT
ACAGAGCCTG GATCCATCAA GGGGCCTTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OHu56998D
Sequence Information ORF Nucleotide Sequence (Length: 1800bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product collagen alpha-2(IX) chain isoform X3
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_032977.10) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
ATGGGGATCC CTGGAGTCAA GGGCCAGCCC GGGCTTCCTG GTCCTCCTGG CCTTCCGGGC 
CCTGGTTTTG CTGGACCTCC TGGGCCTCCT GGACCTGTTG GCCTCCCTGG TGAGATTGGA
ATCCGAGGCC CCAAGGGGGA CCCTGGACCA GATGGACCAT CGGGGCCCCC AGGACCCCCT
GGGAAACCTG GTCGCCCGGG AACCATCCAG GGTCTGGAAG GCAGTGCGGA TTTCCTGGTG
AGAGACGAGT GTCCAACCAA CTGTCCACCC GGAATGAAAG GTCCCCCAGG GCTGCAGGGA
GTGAAGGGGC ATGCGGGCAA ACGCGGGATT CTGGGTGATC CTGGCCACCA GGGGAAGCCG
GGTCCCAAGG GAGATGTGGG TGCCTCTGGA GAGCAAGGCA TCCCTGGACC ACCGGGTCCC
CAGGGCATCA GGGGCTACCC AGGCATGGCA GGGCCCAAGG GAGAGACGGG CCCTCATGGA
TATAAAGGCA TGGTGGGCGC TATCGGTGCC ACTGGGCCAC CGGGTGAGGA AGGTCCTAGG
GGACCGCCAG GCCGAGCTGG GGAGAAGGGT GACGAGGGCA GCCCAGGTAT TCGTGGACCC
CAGGGGATCA CAGGCCCGAA AGGAGCAACG GGCCCCCCAG GCATCAACGG CAAGGATGGG
ACCCCAGGCA CGCCTGGCAT GAAGGGCAGT GCAGGACAGG CGGGACAGCC CGGAAGTCCA
GGCCACCAGG GCCTAGCGGG TGTGCCAGGC CAGCCTGGGA CAAAAGGAGG CCCTGGAGAC
CAGGGTGAGC CGGGCCCGCA GGGCCTTCCT GGATTCTCTG GTCCCCCTGG GAAAGAGGGA
GAGCCAGGGC CTCGAGGAGA AATTGGTCCC CAGGGCATCA TGGGACAGAA GGGTGACCAA
GGCGAGAGGG GTCCAGTGGG GCAACCAGGC CCTCAGGGAA GGCAGGGCCC TAAGGGGGAG
CAGGGCCCCC CCGGAATTCC AGGGCCCCAA GGCTTGCCAG GCGTCAAAGG AGACAAGGGC
TCCCCAGGGA AGACCGGGCC CCGCGGCAAA GTGGGTGACC CAGGGGTGGC CGGCCTCCCC
GGAGAGAAAG GCGAGAAGGG CGAGTCCGGC GAGCCGGGGC CCAAGGGACA GCAAGGAGTA
CGTGGAGAAC CCGGCTACCC TGGCCCCAGC GGGGATGCGG GCGCCCCAGG GGTTCAGGGC
TACCCTGGTC CCCCCGGCCC TCGAGGACTG GCCGGGAACC GAGGCGTGCC AGGACAGCCC
GGGAGACAGG GCGTGGAGGG CCGGGATGCC ACTGACCAGC ACATCGTGGA TGTGGCGCTG
AAGATGCTGC AAGAGCAACT GGCAGAGGTC GCCGTGAGTG CCAAGCGGGA AGCCCTGGGT
GCGGTGGGCA TGATGGGTCC TCCAGGACCT CCTGGGCCCC CTGGGTACCC AGGCAAGCAG
GGCCCCCATG GGCACCCTGG CCCTCGGGGC GTTCCTGGCA TCGTGGGAGC CGTGGGTCAG
ATCGGCAACA CGGGGCCCAA GGGAAAACGT GGAGAGAAGG GTGATCCAGG AGAAGTGGGA
CGGGGGCACC CCGGGATGCC TGGGCCCCCA GGGATCCCAG GACTCCCTGG CCGGCCTGGC
CAGGCAATCA ACGGCAAGGA TGGAGATCGA GGGTCCCCAG GGGCTCCAGG AGAGGCAGGT
CGACCTGGCC TGCCAGGCCC CGTGGGGCTG CCGGGCTTCT GTGAACCTGC CGCCTGCCTT
GGAGCTTCGG CCTATGCCTC TGCCCGCCTT ACAGAGCCTG GATCCATCAA GGGGCCTTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_011539017.1
CDS907..2706
Misc Feature(1)1411..1584(+)
Misc Feature(2)1618..1794(+)
Misc Feature(3)1717..1878(+)
Misc Feature(4)1912..2085(+)
Translation
Position Chain Variation Link
6 6 a, c dbSNP:2747513
22 22 c, t dbSNP:2747512
47 47 a, t dbSNP:142602550
54 54 a, t dbSNP:772828133
55 55 a, c dbSNP:184004294
69 69 a, g dbSNP:546529360
111 111 g, t dbSNP:531687731
126 126 c, t dbSNP:532542808
155 155 a, g dbSNP:563131648
211 211 c, t dbSNP:543244746
231 231 c, t dbSNP:374151065
242 242 a, g dbSNP:209922
261 261 a, g dbSNP:540638378
269 269 c, g dbSNP:781355043
280 280 a, g dbSNP:572019382
281 281 a, g dbSNP:558324504
283 283 -, g dbSNP:35689189
294 294 a, g dbSNP:117353185
300 300 a, c dbSNP:747086847
304 304 c, t dbSNP:576245699
309 309 g, t dbSNP:147567795
325 325 c, t dbSNP:557574856
357 357 a, t dbSNP:537670117
358 358 c, t dbSNP:568736259
369 369 c, g dbSNP:209921
391 391 c, t dbSNP:758557395
437 437 a, c dbSNP:181880127
468 468 c, t dbSNP:750803034
603 603 a, g dbSNP:12132506
628 628 a, c dbSNP:148852798
632 632 c, t dbSNP:176686
671 671 a, c dbSNP:190222462
673 673 c, g dbSNP:3895059
686 686 a, g dbSNP:532451741
689 689 c, t dbSNP:176685
704 704 g, t dbSNP:753341843
712 712 a, g dbSNP:193238892
715 715 a, g dbSNP:760465302
719 719 a, g dbSNP:200424850
728 728 -, c dbSNP:761125486
729 729 g, t dbSNP:752669612
743 743 -, c dbSNP:147470756
748 748 a, g dbSNP:754348378
750 750 a, g dbSNP:759339883
755 755 c, g dbSNP:774746956
762 762 c, t dbSNP:374210090
776 776 g, t dbSNP:755595666
778 778 a, g dbSNP:752583449
783 783 c, t dbSNP:754221348
791 791 c, t dbSNP:377589006
809 809 c, t dbSNP:767523458
818 818 a, g dbSNP:756634659
822 822 c, t dbSNP:748908933
823 823 a, g dbSNP:376234058
841 841 c, t dbSNP:375150574
842 842 a, c dbSNP:747646622
845 845 a, t dbSNP:565528937
846 846 c, t dbSNP:143528915
854 854 -, tgggccaga dbSNP:767763762
854 854 a, c, g dbSNP:200737977
855 855 a, c, t dbSNP:372936826
856 856 a, g dbSNP:376722979
864 864 c, t dbSNP:372016237
865 865 a, g dbSNP:776728239
915 915 a, c dbSNP:778538501
923 923 a, t dbSNP:757569443
928 928 a, g dbSNP:776441743
936 936 c, t dbSNP:144072834
937 937 a, g dbSNP:760368550
938 938 a, g dbSNP:775128466
950 950 c, t dbSNP:771473898
954 954 c, t dbSNP:555650940
957 957 c, g dbSNP:770620030
959 959 g, t dbSNP:143008970
960 960 a, t dbSNP:770793938
962 962 c, t dbSNP:763825965
963 963 a, g dbSNP:201859264
966 966 c, t dbSNP:781228778
967 967 c, g dbSNP:755106661
976 976 c, g dbSNP:747104088
977 977 c, g dbSNP:780149118
985 985 a, c dbSNP:555035046
991 991 c, t dbSNP:369407377
998 998 c, g dbSNP:779524087
1000 1000 a, c dbSNP:146903539
1004 1004 c, t dbSNP:200808068
1014 1014 c, t dbSNP:754207553
1022 1022 c, t dbSNP:148136289
1027 1027 a, g dbSNP:754653233
1031 1031 a, g dbSNP:751212530
1040 1040 a, g dbSNP:765888901
1041 1041 a, g dbSNP:762408011
1052 1052 a, g dbSNP:756445062
1064 1064 a, c dbSNP:751242599
1065 1065 a, g dbSNP:779631674
1067 1067 c, t dbSNP:745373699
1068 1068 a, g dbSNP:749975211
1071 1071 a, g dbSNP:764719071
1072 1072 a, c, t dbSNP:753748970
1079 1079 a, g dbSNP:763798270
1082 1082 c, t dbSNP:77937237
1084 1084 c, t dbSNP:375685025
1094 1094 a, c dbSNP:775879938
1099 1099 c, g dbSNP:777035204
1100 1100 a, g dbSNP:143965571
1104 1104 a, g dbSNP:745522018
1108 1108 a, t dbSNP:553645941
1121 1121 c, t dbSNP:756743515
1128 1128 a, c dbSNP:748881230
1133 1133 c, t dbSNP:146672981
1137 1137 a, t dbSNP:756191230
1140 1140 c, t dbSNP:201819837
1146 1146 a, g dbSNP:571193555
1152 1152 c, t dbSNP:371057771
1153 1153 g, t dbSNP:751763126
1156 1156 c, t dbSNP:751408782
1167 1167 c, t dbSNP:563257155
1170 1170 c, t dbSNP:758704701
1174 1174 a, c dbSNP:750549213
1176 1176 c, t dbSNP:756880415
1177 1177 a, g dbSNP:761837402
1180 1180 a, g dbSNP:113549021
1185 1185 a, g dbSNP:764636136
1189 1189 c, g dbSNP:761059218
1193 1193 -, cc dbSNP:749888464
1198 1198 a, c dbSNP:139455364
1204 1204 g, t dbSNP:554314188
1207 1207 a, g dbSNP:369700719
1212 1212 a, g dbSNP:762681124
1215 1215 a, g dbSNP:757450923
1220 1220 a, c, t dbSNP:764157850
1221 1221 a, g dbSNP:756707028
1222 1222 a, g dbSNP:753088253
1228 1228 c, t dbSNP:767929481
1229 1229 a, g dbSNP:759781792
1230 1230 c, t dbSNP:368775817
1248 1248 -, cct dbSNP:778437735
1251 1251 a, c dbSNP:765020647
1258 1258 c, g dbSNP:761552379
1265 1265 c, t dbSNP:199831035
1280 1280 a, g dbSNP:761570761
1284 1284 c, g dbSNP:776355717
1295 1295 c, g dbSNP:774328643
1298 1298 a, g dbSNP:763686661
1303 1303 a, g dbSNP:760052148
1318 1318 c, t dbSNP:370064150
1319 1319 c, t dbSNP:751487740
1320 1320 a, g dbSNP:147480957
1324 1324 c, t dbSNP:763700283
1325 1325 c, t dbSNP:760341544
1330 1330 a, g dbSNP:139013993
1335 1335 c, t dbSNP:767043817
1341 1341 c, t dbSNP:529508967
1347 1347 a, g dbSNP:759486624
1350 1350 c, g, t dbSNP:770743976
1360 1360 c, t dbSNP:762688830
1367 1367 a, g dbSNP:773038976
1373 1373 c, t dbSNP:2228565
1377 1377 a, c dbSNP:747133313
1378 1378 a, c, g dbSNP:772771389
1383 1383 c, g, t dbSNP:747499674
1395 1395 c, t dbSNP:757575585
1399 1399 a, g dbSNP:747788076
1404 1404 c, t dbSNP:150444024
1405 1405 a, g dbSNP:369221204
1408 1408 a, g dbSNP:751113614
1410 1410 c, t dbSNP:765872341
1411 1411 a, g dbSNP:148362133
1427 1427 c, t dbSNP:534724125
1428 1428 a, g dbSNP:764969929
1434 1434 a, g dbSNP:757111279
1438 1438 a, g dbSNP:753732622
1439 1439 a, g dbSNP:763966106
1451 1451 c, t dbSNP:760992606
1452 1452 a, g, t dbSNP:767738040
1459 1459 c, t dbSNP:759612204
1460 1460 a, g dbSNP:752496710
1467 1467 a, g dbSNP:376517036
1468 1468 a, g dbSNP:561050736
1479 1479 c, t dbSNP:140305893
1480 1480 a, g dbSNP:767307495
1481 1481 a, c dbSNP:770075367
1482 1482 a, g dbSNP:746692571
1489 1489 c, t dbSNP:762209791
1498 1498 c, t dbSNP:776949373
1499 1499 a, g dbSNP:771823937
1511 1511 a, g dbSNP:745492026
1515 1515 c, g dbSNP:371503621
1520 1520 c, g dbSNP:770282352
1523 1523 c, t dbSNP:749271511
1524 1524 a, g dbSNP:376866320
1535 1535 c, t dbSNP:756099117
1536 1536 a, g dbSNP:752584833
1538 1538 a, g dbSNP:372191928
1541 1541 c, g, t dbSNP:369110014
1545 1545 a, c dbSNP:747275231
1554 1554 c, t dbSNP:376991606
1555 1555 a, g dbSNP:184896618
1560 1560 a, g dbSNP:560574843
1563 1563 g, t dbSNP:200290031
1569 1569 a, c dbSNP:757772360
1577 1577 c, t dbSNP:754230024
1578 1578 a, g dbSNP:144615318
1591 1591 a, g dbSNP:758677057
1605 1605 a, g dbSNP:746031866
1607 1607 c, t dbSNP:372004899
1608 1608 a, g dbSNP:369479941
1612 1612 ca, tg dbSNP:137853213
1612 1612 a, c, t dbSNP:12077871
1613 1613 a, c, g, t dbSNP:2228564
1617 1617 a, c, t dbSNP:140834689
1618 1618 a, g dbSNP:199733570
1622 1622 c, g dbSNP:772935733
1631 1631 a, c dbSNP:555032997
1639 1639 c, g dbSNP:2228567
1641 1641 a, g dbSNP:761276112
1643 1643 a, c, t dbSNP:150075912
1644 1644 a, g dbSNP:760647943
1646 1646 c, g dbSNP:199502479
1649 1649 c, t dbSNP:751909501
1654 1654 a, g dbSNP:753194894
1659 1659 a, g dbSNP:781695990
1661 1661 c, g dbSNP:755357677
1677 1677 c, t dbSNP:138882727
1685 1685 a, g dbSNP:765020486
1690 1690 g, t dbSNP:755507989
1691 1691 g, t dbSNP:752033124
1697 1697 c, t dbSNP:201772619
1698 1698 a, g dbSNP:6676013
1699 1699 a, g dbSNP:138592408
1700 1700 g, t dbSNP:763541825
1703 1703 c, g dbSNP:760181989
1704 1704 a, g dbSNP:752181922
1723 1723 c, t dbSNP:113880922
1724 1724 c, g dbSNP:767484378
1727 1727 c, g dbSNP:759466010
1729 1729 c, t dbSNP:774190227
1730 1730 a, c dbSNP:777747401
1748 1748 a, g dbSNP:751436539
1759 1759 c, g dbSNP:375476174
1760 1760 a, g dbSNP:370682522
1765 1765 a, g dbSNP:568502918
1774 1774 a, c dbSNP:554648154
1783 1783 a, g dbSNP:762110744
1786 1786 a, c dbSNP:145327896
1788 1788 a, g dbSNP:376482899
1798 1798 g, t dbSNP:775401012
1800 1800 g, t dbSNP:772704366
1807 1807 a, g dbSNP:747278976
1809 1809 c, t dbSNP:200428596
1822 1822 g, t dbSNP:774793213
1824 1824 a, g dbSNP:201054854
1836 1836 a, c dbSNP:747832673
1854 1854 c, t dbSNP:774683294
1855 1855 a, c dbSNP:565855414
1857 1857 a, t dbSNP:763361168
1859 1859 a, g dbSNP:773538596
1860 1860 a, g, t dbSNP:746580819
1868 1868 a, g dbSNP:558295752
1869 1869 g, t dbSNP:771439599
1872 1872 a, c dbSNP:745839653
1873 1873 c, t dbSNP:201985170
1878 1878 -, c dbSNP:756694568
1878 1878 -, c dbSNP:778635966
1886 1886 c, t dbSNP:757229157
1890 1890 a, g dbSNP:35454564
1898 1898 g, t dbSNP:749161798
1908 1908 a, c dbSNP:777698591
1909 1909 a, c, g dbSNP:148912050
1912 1912 a, g dbSNP:779012121
1918 1918 c, g dbSNP:375240237
1925 1925 a, g dbSNP:771050195
1944 1944 c, g dbSNP:749179749
1946 1946 c, g dbSNP:777717075
1949 1949 a, g dbSNP:755827145
1951 1951 a, g dbSNP:748427537
1965 1965 c, t dbSNP:2228566
1981 1981 c, t dbSNP:758422442
1994 1994 -, aa dbSNP:755372272
2001 2001 a, g dbSNP:750478200
2016 2016 c, t dbSNP:747251984
2022 2022 a, g dbSNP:780301075
2036 2036 a, g dbSNP:373264436
2051 2051 a, g dbSNP:762692798
2053 2053 a, g dbSNP:749963403
2057 2057 c, t dbSNP:764750434
2059 2059 a, g dbSNP:201605482
2064 2064 a, c dbSNP:776579939
2068 2068 a, g, t dbSNP:760500606
2083 2083 a, g dbSNP:775260476
2089 2089 a, g dbSNP:772338077
2112 2112 c, t dbSNP:576148923
2116 2116 c, t dbSNP:202143849
2121 2121 -, c dbSNP:776659931
2121 2121 -, c dbSNP:761748258
2121 2121 c, t dbSNP:774299922
2136 2136 c, g dbSNP:771004338
2137 2137 a, g dbSNP:749782894
2139 2139 a, c, g dbSNP:182012627
2142 2142 g, t dbSNP:748592650
2146 2146 a, c dbSNP:781682527
2150 2150 a, g dbSNP:758140810
2151 2151 c, t dbSNP:750048263
2166 2166 a, c, t dbSNP:11550895
2178 2178 c, t dbSNP:372237097
2187 2187 c, t dbSNP:140697524
2188 2188 c, g dbSNP:773987348
2189 2189 a, g, t dbSNP:200949058
2197 2197 a, g dbSNP:201661697
2200 2200 a, g, t dbSNP:150020975
2203 2203 a, c dbSNP:762429171
2205 2205 a, c, g dbSNP:769009288
2212 2212 a, g dbSNP:141556170
2220 2220 g, t dbSNP:780267285
2223 2223 a, g dbSNP:770628561
2226 2226 a, g dbSNP:146113977
2235 2235 g, t dbSNP:142974512
2246 2246 g, t dbSNP:748971483
2257 2257 a, g dbSNP:200325312
2260 2260 c, g dbSNP:573879844
2270 2270 a, c dbSNP:769412872
2272 2272 a, c, g, t dbSNP:772278003
2273 2273 a, g dbSNP:754945201
2275 2275 a, g dbSNP:367889792
2288 2288 c, t dbSNP:779917331
2289 2289 a, g dbSNP:554052620
2324 2324 a, c dbSNP:200949841
2336 2336 a, c dbSNP:765616855
2338 2338 a, g dbSNP:764583970
2351 2351 a, c dbSNP:578013765
2354 2354 a, g dbSNP:762124802
2368 2368 c, g dbSNP:528002132
2372 2372 a, g dbSNP:764023683
2373 2373 a, g dbSNP:761267460
2375 2375 a, g dbSNP:775820335
2376 2376 c, t dbSNP:768037464
2377 2377 a, g dbSNP:3737821
2389 2389 a, g, t dbSNP:202153520
2397 2397 c, t dbSNP:370130857
2398 2398 a, g dbSNP:376490699
2403 2403 g, t dbSNP:767999106
2409 2409 c, t dbSNP:374571094
2410 2410 a, g dbSNP:535212284
2417 2417 c, t dbSNP:567504204
2418 2418 a, g dbSNP:745727857
2429 2429 a, g dbSNP:757079626
2434 2434 c, t dbSNP:749078666
2435 2435 a, g dbSNP:775570119
2457 2457 a, g dbSNP:541456378
2460 2460 a, g dbSNP:138949427
2462 2462 g, t dbSNP:756345160
2463 2463 a, g dbSNP:752785723
2467 2467 c, t dbSNP:531953673
2468 2468 a, g dbSNP:755487302
2470 2470 a, g dbSNP:142151614
2472 2472 c, g dbSNP:766758379
2475 2475 c, t dbSNP:375875745
2478 2478 c, g, t dbSNP:763724733
2479 2479 a, g dbSNP:760311046
2491 2491 c, t dbSNP:774879246
2493 2493 c, g dbSNP:771660985
2494 2494 c, t dbSNP:759578875
2495 2495 c, t dbSNP:774470944
2502 2502 c, t dbSNP:770970103
2517 2517 a, c dbSNP:372363712
2518 2518 c, t dbSNP:200971976
2519 2519 a, g dbSNP:201000437
2529 2529 a, g dbSNP:772895470
2531 2531 a, c dbSNP:113408847
2537 2537 a, g dbSNP:769578991
2538 2538 c, g, t dbSNP:781428852
2539 2539 a, g dbSNP:768840439
2554 2554 c, t dbSNP:747162216
2561 2561 a, c dbSNP:780045313
2565 2565 a, g dbSNP:758844390
2577 2577 a, g dbSNP:750896997
2579 2579 a, c dbSNP:779177140
2586 2586 g, t dbSNP:757681519
2587 2587 c, t dbSNP:754234353
2588 2588 a, g dbSNP:199850925
2597 2597 c, t dbSNP:754673796
2598 2598 g, t dbSNP:142867960
2604 2604 c, g dbSNP:765856534
2607 2607 c, t dbSNP:762817478
2608 2608 a, g dbSNP:773159349
2616 2616 a, g dbSNP:765050254
2617 2617 a, c dbSNP:140041506
2618 2618 c, t dbSNP:150687987
2619 2619 a, g dbSNP:144539022
2621 2621 a, g dbSNP:747178798
2629 2629 c, g dbSNP:775572033
2637 2637 c, t dbSNP:2229826
2638 2638 a, g dbSNP:569464393
2654 2654 c, t dbSNP:779524161
2655 2655 a, g dbSNP:148008235
2656 2656 a, g dbSNP:749736976
2658 2658 a, c dbSNP:778216645
2665 2665 c, t dbSNP:754688437
2671 2671 c, t dbSNP:199547057
2672 2672 a, g dbSNP:199897562
2673 2673 c, t dbSNP:757963762
2686 2686 a, g dbSNP:749873890
2687 2687 a, g dbSNP:765273618
2690 2690 a, c dbSNP:761675654
2694 2694 c, t dbSNP:115675008
2695 2695 a, g dbSNP:201847956
2702 2702 c, t dbSNP:760921400
2712 2712 a, c dbSNP:775823584
2716 2716 c, t dbSNP:764864718
2725 2725 a, c, g dbSNP:746019124
2743 2743 c, t dbSNP:774289715
2744 2744 a, g dbSNP:547105794
2748 2748 a, g dbSNP:749753328
2754 2754 a, c dbSNP:778302764
2767 2767 -, g dbSNP:35948159
2773 2773 a, g dbSNP:553963794
2806 2806 c, t dbSNP:534465543
2817 2817 c, t dbSNP:114634369
2818 2818 c, t dbSNP:564283453
2828 2828 c, t dbSNP:2229827
2907 2907 a, c dbSNP:137890492
2923 2923 a, g dbSNP:536500598
2928 2928 a, g dbSNP:561657830
2942 2942 a, g dbSNP:41480445
2957 2957 c, t dbSNP:146173817
2969 2969 c, t dbSNP:187788913
2973 2973 a, g dbSNP:545871447
2983 2983 c, t dbSNP:774784075
2984 2984 a, g dbSNP:771268496
3018 3018 a, t dbSNP:41466547
3020 3020 c, t dbSNP:2747510
3060 3060 a, g dbSNP:558294493
3069 3069 a, g dbSNP:538062384
3075 3075 a, c dbSNP:773649280
3076 3076 a, g dbSNP:548912125
3149 3149 c, t dbSNP:531591616
3177 3177 c, g dbSNP:141640918
3182 3182 acc, gct dbSNP:386630594
3202 3202 c, t dbSNP:556090205
3205 3205 a, c dbSNP:748640174
3225 3225 -, c dbSNP:141076024
3226 3226 -, a dbSNP:200890876
3249 3249 a, g dbSNP:75291055
3267 3267 a, g dbSNP:138560646
3284 3284 c, t dbSNP:143152709
3286 3286 a, c dbSNP:771654481
3300 3300 c, t dbSNP:539893767
3328 3328 c, g dbSNP:767779846

Target ORF information:

RefSeq Version XM_011540715
Organism Homo sapiens (human)
Definition PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X3, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_011540715

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
ATGGGGATCC CTGGAGTCAA GGGCCAGCCC GGGCTTCCTG GTCCTCCTGG CCTTCCGGGC 
CCTGGTTTTG CTGGACCTCC TGGGCCTCCT GGACCTGTTG GCCTCCCTGG TGAGATTGGA
ATCCGAGGCC CCAAGGGGGA CCCTGGACCA GATGGACCAT CGGGGCCCCC AGGACCCCCT
GGGAAACCTG GTCGCCCGGG AACCATCCAG GGTCTGGAAG GCAGTGCGGA TTTCCTGGTG
AGAGACGAGT GTCCAACCAA CTGTCCACCC GGAATGAAAG GTCCCCCAGG GCTGCAGGGA
GTGAAGGGGC ATGCGGGCAA ACGCGGGATT CTGGGTGATC CTGGCCACCA GGGGAAGCCG
GGTCCCAAGG GAGATGTGGG TGCCTCTGGA GAGCAAGGCA TCCCTGGACC ACCGGGTCCC
CAGGGCATCA GGGGCTACCC AGGCATGGCA GGGCCCAAGG GAGAGACGGG CCCTCATGGA
TATAAAGGCA TGGTGGGCGC TATCGGTGCC ACTGGGCCAC CGGGTGAGGA AGGTCCTAGG
GGACCGCCAG GCCGAGCTGG GGAGAAGGGT GACGAGGGCA GCCCAGGTAT TCGTGGACCC
CAGGGGATCA CAGGCCCGAA AGGAGCAACG GGCCCCCCAG GCATCAACGG CAAGGATGGG
ACCCCAGGCA CGCCTGGCAT GAAGGGCAGT GCAGGACAGG CGGGACAGCC CGGAAGTCCA
GGCCACCAGG GCCTAGCGGG TGTGCCAGGC CAGCCTGGGA CAAAAGGAGG CCCTGGAGAC
CAGGGTGAGC CGGGCCCGCA GGGCCTTCCT GGATTCTCTG GTCCCCCTGG GAAAGAGGGA
GAGCCAGGGC CTCGAGGAGA AATTGGTCCC CAGGGCATCA TGGGACAGAA GGGTGACCAA
GGCGAGAGGG GTCCAGTGGG GCAACCAGGC CCTCAGGGAA GGCAGGGCCC TAAGGGGGAG
CAGGGCCCCC CCGGAATTCC AGGGCCCCAA GGCTTGCCAG GCGTCAAAGG AGACAAGGGC
TCCCCAGGGA AGACCGGGCC CCGCGGCAAA GTGGGTGACC CAGGGGTGGC CGGCCTCCCC
GGAGAGAAAG GCGAGAAGGG CGAGTCCGGC GAGCCGGGGC CCAAGGGACA GCAAGGAGTA
CGTGGAGAAC CCGGCTACCC TGGCCCCAGC GGGGATGCGG GCGCCCCAGG GGTTCAGGGC
TACCCTGGTC CCCCCGGCCC TCGAGGACTG GCCGGGAACC GAGGCGTGCC AGGACAGCCC
GGGAGACAGG GCGTGGAGGG CCGGGATGCC ACTGACCAGC ACATCGTGGA TGTGGCGCTG
AAGATGCTGC AAGAGCAACT GGCAGAGGTC GCCGTGAGTG CCAAGCGGGA AGCCCTGGGT
GCGGTGGGCA TGATGGGTCC TCCAGGACCT CCTGGGCCCC CTGGGTACCC AGGCAAGCAG
GGCCCCCATG GGCACCCTGG CCCTCGGGGC GTTCCTGGCA TCGTGGGAGC CGTGGGTCAG
ATCGGCAACA CGGGGCCCAA GGGAAAACGT GGAGAGAAGG GTGATCCAGG AGAAGTGGGA
CGGGGGCACC CCGGGATGCC TGGGCCCCCA GGGATCCCAG GACTCCCTGG CCGGCCTGGC
CAGGCAATCA ACGGCAAGGA TGGAGATCGA GGGTCCCCAG GGGCTCCAGG AGAGGCAGGT
CGACCTGGCC TGCCAGGCCC CGTGGGGCTG CCGGGCTTCT GTGAACCTGC CGCCTGCCTT
GGAGCTTCGG CCTATGCCTC TGCCCGCCTT ACAGAGCCTG GATCCATCAA GGGGCCTTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OHu56998D
Sequence Information ORF Nucleotide Sequence (Length: 1800bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product collagen alpha-2(IX) chain isoform X3
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_032977.10) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
ATGGGGATCC CTGGAGTCAA GGGCCAGCCC GGGCTTCCTG GTCCTCCTGG CCTTCCGGGC 
CCTGGTTTTG CTGGACCTCC TGGGCCTCCT GGACCTGTTG GCCTCCCTGG TGAGATTGGA
ATCCGAGGCC CCAAGGGGGA CCCTGGACCA GATGGACCAT CGGGGCCCCC AGGACCCCCT
GGGAAACCTG GTCGCCCGGG AACCATCCAG GGTCTGGAAG GCAGTGCGGA TTTCCTGGTG
AGAGACGAGT GTCCAACCAA CTGTCCACCC GGAATGAAAG GTCCCCCAGG GCTGCAGGGA
GTGAAGGGGC ATGCGGGCAA ACGCGGGATT CTGGGTGATC CTGGCCACCA GGGGAAGCCG
GGTCCCAAGG GAGATGTGGG TGCCTCTGGA GAGCAAGGCA TCCCTGGACC ACCGGGTCCC
CAGGGCATCA GGGGCTACCC AGGCATGGCA GGGCCCAAGG GAGAGACGGG CCCTCATGGA
TATAAAGGCA TGGTGGGCGC TATCGGTGCC ACTGGGCCAC CGGGTGAGGA AGGTCCTAGG
GGACCGCCAG GCCGAGCTGG GGAGAAGGGT GACGAGGGCA GCCCAGGTAT TCGTGGACCC
CAGGGGATCA CAGGCCCGAA AGGAGCAACG GGCCCCCCAG GCATCAACGG CAAGGATGGG
ACCCCAGGCA CGCCTGGCAT GAAGGGCAGT GCAGGACAGG CGGGACAGCC CGGAAGTCCA
GGCCACCAGG GCCTAGCGGG TGTGCCAGGC CAGCCTGGGA CAAAAGGAGG CCCTGGAGAC
CAGGGTGAGC CGGGCCCGCA GGGCCTTCCT GGATTCTCTG GTCCCCCTGG GAAAGAGGGA
GAGCCAGGGC CTCGAGGAGA AATTGGTCCC CAGGGCATCA TGGGACAGAA GGGTGACCAA
GGCGAGAGGG GTCCAGTGGG GCAACCAGGC CCTCAGGGAA GGCAGGGCCC TAAGGGGGAG
CAGGGCCCCC CCGGAATTCC AGGGCCCCAA GGCTTGCCAG GCGTCAAAGG AGACAAGGGC
TCCCCAGGGA AGACCGGGCC CCGCGGCAAA GTGGGTGACC CAGGGGTGGC CGGCCTCCCC
GGAGAGAAAG GCGAGAAGGG CGAGTCCGGC GAGCCGGGGC CCAAGGGACA GCAAGGAGTA
CGTGGAGAAC CCGGCTACCC TGGCCCCAGC GGGGATGCGG GCGCCCCAGG GGTTCAGGGC
TACCCTGGTC CCCCCGGCCC TCGAGGACTG GCCGGGAACC GAGGCGTGCC AGGACAGCCC
GGGAGACAGG GCGTGGAGGG CCGGGATGCC ACTGACCAGC ACATCGTGGA TGTGGCGCTG
AAGATGCTGC AAGAGCAACT GGCAGAGGTC GCCGTGAGTG CCAAGCGGGA AGCCCTGGGT
GCGGTGGGCA TGATGGGTCC TCCAGGACCT CCTGGGCCCC CTGGGTACCC AGGCAAGCAG
GGCCCCCATG GGCACCCTGG CCCTCGGGGC GTTCCTGGCA TCGTGGGAGC CGTGGGTCAG
ATCGGCAACA CGGGGCCCAA GGGAAAACGT GGAGAGAAGG GTGATCCAGG AGAAGTGGGA
CGGGGGCACC CCGGGATGCC TGGGCCCCCA GGGATCCCAG GACTCCCTGG CCGGCCTGGC
CAGGCAATCA ACGGCAAGGA TGGAGATCGA GGGTCCCCAG GGGCTCCAGG AGAGGCAGGT
CGACCTGGCC TGCCAGGCCC CGTGGGGCTG CCGGGCTTCT GTGAACCTGC CGCCTGCCTT
GGAGCTTCGG CCTATGCCTC TGCCCGCCTT ACAGAGCCTG GATCCATCAA GGGGCCTTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_011539018.1
CDS410..2209
Misc Feature(1)914..1087(+)
Misc Feature(2)1121..1297(+)
Misc Feature(3)1220..1381(+)
Misc Feature(4)1415..1588(+)
Translation
Position Chain Variation Link
5 5 a, g dbSNP:562585591
8 8 -, c dbSNP:200989271
8 8 c, t dbSNP:543991803
10 10 -, g, tc dbSNP:386630598
10 10 g, t dbSNP:115504008
10 10 -, t dbSNP:771916971
11 11 -, c dbSNP:751784763
11 11 -, c dbSNP:111700365
11 11 c, g dbSNP:5009603
22 22 a, g dbSNP:554910524
24 24 g, t dbSNP:374828593
36 36 c, g dbSNP:139561954
38 38 a, c dbSNP:558888071
86 86 c, t dbSNP:388068
111 111 a, g dbSNP:538667158
113 113 a, t dbSNP:188644827
114 114 c, t dbSNP:766146693
119 119 a, g dbSNP:543241449
121 121 a, c dbSNP:565298369
141 141 a, g dbSNP:774020339
149 149 c, t dbSNP:1846158
172 172 a, g dbSNP:573526020
198 198 c, t dbSNP:209920
231 231 g, t dbSNP:183694459
253 253 c, t dbSNP:543064
262 262 c, t dbSNP:543084
267 267 c, t dbSNP:191109286
268 268 c, g dbSNP:565061739
279 279 g, t dbSNP:755595666
281 281 a, g dbSNP:752583449
286 286 c, t dbSNP:754221348
294 294 c, t dbSNP:377589006
312 312 c, t dbSNP:767523458
321 321 a, g dbSNP:756634659
325 325 c, t dbSNP:748908933
326 326 a, g dbSNP:376234058
344 344 c, t dbSNP:375150574
345 345 a, c dbSNP:747646622
348 348 a, t dbSNP:565528937
349 349 c, t dbSNP:143528915
357 357 -, tgggccaga dbSNP:767763762
357 357 a, c, g dbSNP:200737977
358 358 a, c, t dbSNP:372936826
359 359 a, g dbSNP:376722979
367 367 c, t dbSNP:372016237
368 368 a, g dbSNP:776728239
418 418 a, c dbSNP:778538501
426 426 a, t dbSNP:757569443
431 431 a, g dbSNP:776441743
439 439 c, t dbSNP:144072834
440 440 a, g dbSNP:760368550
441 441 a, g dbSNP:775128466
453 453 c, t dbSNP:771473898
457 457 c, t dbSNP:555650940
460 460 c, g dbSNP:770620030
462 462 g, t dbSNP:143008970
463 463 a, t dbSNP:770793938
465 465 c, t dbSNP:763825965
466 466 a, g dbSNP:201859264
469 469 c, t dbSNP:781228778
470 470 c, g dbSNP:755106661
479 479 c, g dbSNP:747104088
480 480 c, g dbSNP:780149118
488 488 a, c dbSNP:555035046
494 494 c, t dbSNP:369407377
501 501 c, g dbSNP:779524087
503 503 a, c dbSNP:146903539
507 507 c, t dbSNP:200808068
517 517 c, t dbSNP:754207553
525 525 c, t dbSNP:148136289
530 530 a, g dbSNP:754653233
534 534 a, g dbSNP:751212530
543 543 a, g dbSNP:765888901
544 544 a, g dbSNP:762408011
555 555 a, g dbSNP:756445062
567 567 a, c dbSNP:751242599
568 568 a, g dbSNP:779631674
570 570 c, t dbSNP:745373699
571 571 a, g dbSNP:749975211
574 574 a, g dbSNP:764719071
575 575 a, c, t dbSNP:753748970
582 582 a, g dbSNP:763798270
585 585 c, t dbSNP:77937237
587 587 c, t dbSNP:375685025
597 597 a, c dbSNP:775879938
602 602 c, g dbSNP:777035204
603 603 a, g dbSNP:143965571
607 607 a, g dbSNP:745522018
611 611 a, t dbSNP:553645941
624 624 c, t dbSNP:756743515
631 631 a, c dbSNP:748881230
636 636 c, t dbSNP:146672981
640 640 a, t dbSNP:756191230
643 643 c, t dbSNP:201819837
649 649 a, g dbSNP:571193555
655 655 c, t dbSNP:371057771
656 656 g, t dbSNP:751763126
659 659 c, t dbSNP:751408782
670 670 c, t dbSNP:563257155
673 673 c, t dbSNP:758704701
677 677 a, c dbSNP:750549213
679 679 c, t dbSNP:756880415
680 680 a, g dbSNP:761837402
683 683 a, g dbSNP:113549021
688 688 a, g dbSNP:764636136
692 692 c, g dbSNP:761059218
696 696 -, cc dbSNP:749888464
701 701 a, c dbSNP:139455364
707 707 g, t dbSNP:554314188
710 710 a, g dbSNP:369700719
715 715 a, g dbSNP:762681124
718 718 a, g dbSNP:757450923
723 723 a, c, t dbSNP:764157850
724 724 a, g dbSNP:756707028
725 725 a, g dbSNP:753088253
731 731 c, t dbSNP:767929481
732 732 a, g dbSNP:759781792
733 733 c, t dbSNP:368775817
751 751 -, cct dbSNP:778437735
754 754 a, c dbSNP:765020647
761 761 c, g dbSNP:761552379
768 768 c, t dbSNP:199831035
783 783 a, g dbSNP:761570761
787 787 c, g dbSNP:776355717
798 798 c, g dbSNP:774328643
801 801 a, g dbSNP:763686661
806 806 a, g dbSNP:760052148
821 821 c, t dbSNP:370064150
822 822 c, t dbSNP:751487740
823 823 a, g dbSNP:147480957
827 827 c, t dbSNP:763700283
828 828 c, t dbSNP:760341544
833 833 a, g dbSNP:139013993
838 838 c, t dbSNP:767043817
844 844 c, t dbSNP:529508967
850 850 a, g dbSNP:759486624
853 853 c, g, t dbSNP:770743976
863 863 c, t dbSNP:762688830
870 870 a, g dbSNP:773038976
876 876 c, t dbSNP:2228565
880 880 a, c dbSNP:747133313
881 881 a, c, g dbSNP:772771389
886 886 c, g, t dbSNP:747499674
898 898 c, t dbSNP:757575585
902 902 a, g dbSNP:747788076
907 907 c, t dbSNP:150444024
908 908 a, g dbSNP:369221204
911 911 a, g dbSNP:751113614
913 913 c, t dbSNP:765872341
914 914 a, g dbSNP:148362133
930 930 c, t dbSNP:534724125
931 931 a, g dbSNP:764969929
937 937 a, g dbSNP:757111279
941 941 a, g dbSNP:753732622
942 942 a, g dbSNP:763966106
954 954 c, t dbSNP:760992606
955 955 a, g, t dbSNP:767738040
962 962 c, t dbSNP:759612204
963 963 a, g dbSNP:752496710
970 970 a, g dbSNP:376517036
971 971 a, g dbSNP:561050736
982 982 c, t dbSNP:140305893
983 983 a, g dbSNP:767307495
984 984 a, c dbSNP:770075367
985 985 a, g dbSNP:746692571
992 992 c, t dbSNP:762209791
1001 1001 c, t dbSNP:776949373
1002 1002 a, g dbSNP:771823937
1014 1014 a, g dbSNP:745492026
1018 1018 c, g dbSNP:371503621
1023 1023 c, g dbSNP:770282352
1026 1026 c, t dbSNP:749271511
1027 1027 a, g dbSNP:376866320
1038 1038 c, t dbSNP:756099117
1039 1039 a, g dbSNP:752584833
1041 1041 a, g dbSNP:372191928
1044 1044 c, g, t dbSNP:369110014
1048 1048 a, c dbSNP:747275231
1057 1057 c, t dbSNP:376991606
1058 1058 a, g dbSNP:184896618
1063 1063 a, g dbSNP:560574843
1066 1066 g, t dbSNP:200290031
1072 1072 a, c dbSNP:757772360
1080 1080 c, t dbSNP:754230024
1081 1081 a, g dbSNP:144615318
1094 1094 a, g dbSNP:758677057
1108 1108 a, g dbSNP:746031866
1110 1110 c, t dbSNP:372004899
1111 1111 a, g dbSNP:369479941
1115 1115 ca, tg dbSNP:137853213
1115 1115 a, c, t dbSNP:12077871
1116 1116 a, c, g, t dbSNP:2228564
1120 1120 a, c, t dbSNP:140834689
1121 1121 a, g dbSNP:199733570
1125 1125 c, g dbSNP:772935733
1134 1134 a, c dbSNP:555032997
1142 1142 c, g dbSNP:2228567
1144 1144 a, g dbSNP:761276112
1146 1146 a, c, t dbSNP:150075912
1147 1147 a, g dbSNP:760647943
1149 1149 c, g dbSNP:199502479
1152 1152 c, t dbSNP:751909501
1157 1157 a, g dbSNP:753194894
1162 1162 a, g dbSNP:781695990
1164 1164 c, g dbSNP:755357677
1180 1180 c, t dbSNP:138882727
1188 1188 a, g dbSNP:765020486
1193 1193 g, t dbSNP:755507989
1194 1194 g, t dbSNP:752033124
1200 1200 c, t dbSNP:201772619
1201 1201 a, g dbSNP:6676013
1202 1202 a, g dbSNP:138592408
1203 1203 g, t dbSNP:763541825
1206 1206 c, g dbSNP:760181989
1207 1207 a, g dbSNP:752181922
1226 1226 c, t dbSNP:113880922
1227 1227 c, g dbSNP:767484378
1230 1230 c, g dbSNP:759466010
1232 1232 c, t dbSNP:774190227
1233 1233 a, c dbSNP:777747401
1251 1251 a, g dbSNP:751436539
1262 1262 c, g dbSNP:375476174
1263 1263 a, g dbSNP:370682522
1268 1268 a, g dbSNP:568502918
1277 1277 a, c dbSNP:554648154
1286 1286 a, g dbSNP:762110744
1289 1289 a, c dbSNP:145327896
1291 1291 a, g dbSNP:376482899
1301 1301 g, t dbSNP:775401012
1303 1303 g, t dbSNP:772704366
1310 1310 a, g dbSNP:747278976
1312 1312 c, t dbSNP:200428596
1325 1325 g, t dbSNP:774793213
1327 1327 a, g dbSNP:201054854
1339 1339 a, c dbSNP:747832673
1357 1357 c, t dbSNP:774683294
1358 1358 a, c dbSNP:565855414
1360 1360 a, t dbSNP:763361168
1362 1362 a, g dbSNP:773538596
1363 1363 a, g, t dbSNP:746580819
1371 1371 a, g dbSNP:558295752
1372 1372 g, t dbSNP:771439599
1375 1375 a, c dbSNP:745839653
1376 1376 c, t dbSNP:201985170
1381 1381 -, c dbSNP:756694568
1381 1381 -, c dbSNP:778635966
1389 1389 c, t dbSNP:757229157
1393 1393 a, g dbSNP:35454564
1401 1401 g, t dbSNP:749161798
1411 1411 a, c dbSNP:777698591
1412 1412 a, c, g dbSNP:148912050
1415 1415 a, g dbSNP:779012121
1421 1421 c, g dbSNP:375240237
1428 1428 a, g dbSNP:771050195
1447 1447 c, g dbSNP:749179749
1449 1449 c, g dbSNP:777717075
1452 1452 a, g dbSNP:755827145
1454 1454 a, g dbSNP:748427537
1468 1468 c, t dbSNP:2228566
1484 1484 c, t dbSNP:758422442
1497 1497 -, aa dbSNP:755372272
1504 1504 a, g dbSNP:750478200
1519 1519 c, t dbSNP:747251984
1525 1525 a, g dbSNP:780301075
1539 1539 a, g dbSNP:373264436
1554 1554 a, g dbSNP:762692798
1556 1556 a, g dbSNP:749963403
1560 1560 c, t dbSNP:764750434
1562 1562 a, g dbSNP:201605482
1567 1567 a, c dbSNP:776579939
1571 1571 a, g, t dbSNP:760500606
1586 1586 a, g dbSNP:775260476
1592 1592 a, g dbSNP:772338077
1615 1615 c, t dbSNP:576148923
1619 1619 c, t dbSNP:202143849
1624 1624 -, c dbSNP:776659931
1624 1624 -, c dbSNP:761748258
1624 1624 c, t dbSNP:774299922
1639 1639 c, g dbSNP:771004338
1640 1640 a, g dbSNP:749782894
1642 1642 a, c, g dbSNP:182012627
1645 1645 g, t dbSNP:748592650
1649 1649 a, c dbSNP:781682527
1653 1653 a, g dbSNP:758140810
1654 1654 c, t dbSNP:750048263
1669 1669 a, c, t dbSNP:11550895
1681 1681 c, t dbSNP:372237097
1690 1690 c, t dbSNP:140697524
1691 1691 c, g dbSNP:773987348
1692 1692 a, g, t dbSNP:200949058
1700 1700 a, g dbSNP:201661697
1703 1703 a, g, t dbSNP:150020975
1706 1706 a, c dbSNP:762429171
1708 1708 a, c, g dbSNP:769009288
1715 1715 a, g dbSNP:141556170
1723 1723 g, t dbSNP:780267285
1726 1726 a, g dbSNP:770628561
1729 1729 a, g dbSNP:146113977
1738 1738 g, t dbSNP:142974512
1749 1749 g, t dbSNP:748971483
1760 1760 a, g dbSNP:200325312
1763 1763 c, g dbSNP:573879844
1773 1773 a, c dbSNP:769412872
1775 1775 a, c, g, t dbSNP:772278003
1776 1776 a, g dbSNP:754945201
1778 1778 a, g dbSNP:367889792
1791 1791 c, t dbSNP:779917331
1792 1792 a, g dbSNP:554052620
1827 1827 a, c dbSNP:200949841
1839 1839 a, c dbSNP:765616855
1841 1841 a, g dbSNP:764583970
1854 1854 a, c dbSNP:578013765
1857 1857 a, g dbSNP:762124802
1871 1871 c, g dbSNP:528002132
1875 1875 a, g dbSNP:764023683
1876 1876 a, g dbSNP:761267460
1878 1878 a, g dbSNP:775820335
1879 1879 c, t dbSNP:768037464
1880 1880 a, g dbSNP:3737821
1892 1892 a, g, t dbSNP:202153520
1900 1900 c, t dbSNP:370130857
1901 1901 a, g dbSNP:376490699
1906 1906 g, t dbSNP:767999106
1912 1912 c, t dbSNP:374571094
1913 1913 a, g dbSNP:535212284
1920 1920 c, t dbSNP:567504204
1921 1921 a, g dbSNP:745727857
1932 1932 a, g dbSNP:757079626
1937 1937 c, t dbSNP:749078666
1938 1938 a, g dbSNP:775570119
1960 1960 a, g dbSNP:541456378
1963 1963 a, g dbSNP:138949427
1965 1965 g, t dbSNP:756345160
1966 1966 a, g dbSNP:752785723
1970 1970 c, t dbSNP:531953673
1971 1971 a, g dbSNP:755487302
1973 1973 a, g dbSNP:142151614
1975 1975 c, g dbSNP:766758379
1978 1978 c, t dbSNP:375875745
1981 1981 c, g, t dbSNP:763724733
1982 1982 a, g dbSNP:760311046
1994 1994 c, t dbSNP:774879246
1996 1996 c, g dbSNP:771660985
1997 1997 c, t dbSNP:759578875
1998 1998 c, t dbSNP:774470944
2005 2005 c, t dbSNP:770970103
2020 2020 a, c dbSNP:372363712
2021 2021 c, t dbSNP:200971976
2022 2022 a, g dbSNP:201000437
2032 2032 a, g dbSNP:772895470
2034 2034 a, c dbSNP:113408847
2040 2040 a, g dbSNP:769578991
2041 2041 c, g, t dbSNP:781428852
2042 2042 a, g dbSNP:768840439
2057 2057 c, t dbSNP:747162216
2064 2064 a, c dbSNP:780045313
2068 2068 a, g dbSNP:758844390
2080 2080 a, g dbSNP:750896997
2082 2082 a, c dbSNP:779177140
2089 2089 g, t dbSNP:757681519
2090 2090 c, t dbSNP:754234353
2091 2091 a, g dbSNP:199850925
2100 2100 c, t dbSNP:754673796
2101 2101 g, t dbSNP:142867960
2107 2107 c, g dbSNP:765856534
2110 2110 c, t dbSNP:762817478
2111 2111 a, g dbSNP:773159349
2119 2119 a, g dbSNP:765050254
2120 2120 a, c dbSNP:140041506
2121 2121 c, t dbSNP:150687987
2122 2122 a, g dbSNP:144539022
2124 2124 a, g dbSNP:747178798
2132 2132 c, g dbSNP:775572033
2140 2140 c, t dbSNP:2229826
2141 2141 a, g dbSNP:569464393
2157 2157 c, t dbSNP:779524161
2158 2158 a, g dbSNP:148008235
2159 2159 a, g dbSNP:749736976
2161 2161 a, c dbSNP:778216645
2168 2168 c, t dbSNP:754688437
2174 2174 c, t dbSNP:199547057
2175 2175 a, g dbSNP:199897562
2176 2176 c, t dbSNP:757963762
2189 2189 a, g dbSNP:749873890
2190 2190 a, g dbSNP:765273618
2193 2193 a, c dbSNP:761675654
2197 2197 c, t dbSNP:115675008
2198 2198 a, g dbSNP:201847956
2205 2205 c, t dbSNP:760921400
2215 2215 a, c dbSNP:775823584
2219 2219 c, t dbSNP:764864718
2228 2228 a, c, g dbSNP:746019124
2246 2246 c, t dbSNP:774289715
2247 2247 a, g dbSNP:547105794
2251 2251 a, g dbSNP:749753328
2257 2257 a, c dbSNP:778302764
2270 2270 -, g dbSNP:35948159
2276 2276 a, g dbSNP:553963794
2309 2309 c, t dbSNP:534465543
2320 2320 c, t dbSNP:114634369
2321 2321 c, t dbSNP:564283453
2331 2331 c, t dbSNP:2229827
2410 2410 a, c dbSNP:137890492
2426 2426 a, g dbSNP:536500598
2431 2431 a, g dbSNP:561657830
2445 2445 a, g dbSNP:41480445
2460 2460 c, t dbSNP:146173817
2472 2472 c, t dbSNP:187788913
2476 2476 a, g dbSNP:545871447
2486 2486 c, t dbSNP:774784075
2487 2487 a, g dbSNP:771268496
2521 2521 a, t dbSNP:41466547
2523 2523 c, t dbSNP:2747510
2563 2563 a, g dbSNP:558294493
2572 2572 a, g dbSNP:538062384
2578 2578 a, c dbSNP:773649280
2579 2579 a, g dbSNP:548912125
2652 2652 c, t dbSNP:531591616
2680 2680 c, g dbSNP:141640918
2685 2685 acc, gct dbSNP:386630594
2705 2705 c, t dbSNP:556090205
2708 2708 a, c dbSNP:748640174
2728 2728 -, c dbSNP:141076024
2729 2729 -, a dbSNP:200890876
2752 2752 a, g dbSNP:75291055
2770 2770 a, g dbSNP:138560646
2787 2787 c, t dbSNP:143152709
2789 2789 a, c dbSNP:771654481
2803 2803 c, t dbSNP:539893767
2831 2831 c, g dbSNP:767779846

Target ORF information:

RefSeq Version XM_011540716
Organism Homo sapiens (human)
Definition PREDICTED: Homo sapiens collagen, type IX, alpha 2 (COL9A2), transcript variant X4, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_011540716

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
ATGGGGATCC CTGGAGTCAA GGGCCAGCCC GGGCTTCCTG GTCCTCCTGG CCTTCCGGGC 
CCTGGTTTTG CTGGACCTCC TGGGCCTCCT GGACCTGTTG GCCTCCCTGG TGAGATTGGA
ATCCGAGGCC CCAAGGGGGA CCCTGGACCA GATGGACCAT CGGGGCCCCC AGGACCCCCT
GGGAAACCTG GTCGCCCGGG AACCATCCAG GGTCTGGAAG GCAGTGCGGA TTTCCTGGTG
AGAGACGAGT GTCCAACCAA CTGTCCACCC GGAATGAAAG GTCCCCCAGG GCTGCAGGGA
GTGAAGGGGC ATGCGGGCAA ACGCGGGATT CTGGGTGATC CTGGCCACCA GGGGAAGCCG
GGTCCCAAGG GAGATGTGGG TGCCTCTGGA GAGCAAGGCA TCCCTGGACC ACCGGGTCCC
CAGGGCATCA GGGGCTACCC AGGCATGGCA GGGCCCAAGG GAGAGACGGG CCCTCATGGA
TATAAAGGCA TGGTGGGCGC TATCGGTGCC ACTGGGCCAC CGGGTGAGGA AGGTCCTAGG
GGACCGCCAG GCCGAGCTGG GGAGAAGGGT GACGAGGGCA GCCCAGGTAT TCGTGGACCC
CAGGGGATCA CAGGCCCGAA AGGAGCAACG GGCCCCCCAG GCATCAACGG CAAGGATGGG
ACCCCAGGCA CGCCTGGCAT GAAGGGCAGT GCAGGACAGG CGGGACAGCC CGGAAGTCCA
GGCCACCAGG GCCTAGCGGG TGTGCCAGGC CAGCCTGGGA CAAAAGGAGG CCCTGGAGAC
CAGGGTGAGC CGGGCCCGCA GGGCCTTCCT GGATTCTCTG GTCCCCCTGG GAAAGAGGGA
GAGCCAGGGC CTCGAGGAGA AATTGGTCCC CAGGGCATCA TGGGACAGAA GGGTGACCAA
GGCGAGAGGG GTCCAGTGGG GCAACCAGGC CCTCAGGGAA GGCAGGGCCC TAAGGGGGAG
CAGGGCCCCC CCGGAATTCC AGGGCCCCAA GGCTTGCCAG GCGTCAAAGG AGACAAGGGC
TCCCCAGGGA AGACCGGGCC CCGCGGCAAA GTGGGTGACC CAGGGGTGGC CGGCCTCCCC
GGAGAGAAAG GCGAGAAGGG CGAGTCCGGC GAGCCGGGGC CCAAGGGACA GCAAGGAGTA
CGTGGAGAAC CCGGCTACCC TGGCCCCAGC GGGGATGCGG GCGCCCCAGG GGTTCAGGGC
TACCCTGGTC CCCCCGGCCC TCGAGGACTG GCCGGGAACC GAGGCGTGCC AGGACAGCCC
GGGAGACAGG GCGTGGAGGG CCGGGATGCC ACTGACCAGC ACATCGTGGA TGTGGCGCTG
AAGATGCTGC AAGAGCAACT GGCAGAGGTC GCCGTGAGTG CCAAGCGGGA AGCCCTGGGT
GCGGTGGGCA TGATGGGTCC TCCAGGACCT CCTGGGCCCC CTGGGTACCC AGGCAAGCAG
GGCCCCCATG GGCACCCTGG CCCTCGGGGC GTTCCTGGCA TCGTGGGAGC CGTGGGTCAG
ATCGGCAACA CGGGGCCCAA GGGAAAACGT GGAGAGAAGG GTGATCCAGG AGAAGTGGGA
CGGGGGCACC CCGGGATGCC TGGGCCCCCA GGGATCCCAG GACTCCCTGG CCGGCCTGGC
CAGGCAATCA ACGGCAAGGA TGGAGATCGA GGGTCCCCAG GGGCTCCAGG AGAGGCAGGT
CGACCTGGCC TGCCAGGCCC CGTGGGGCTG CCGGGCTTCT GTGAACCTGC CGCCTGCCTT
GGAGCTTCGG CCTATGCCTC TGCCCGCCTT ACAGAGCCTG GATCCATCAA GGGGCCTTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OHu56999D
Sequence Information ORF Nucleotide Sequence (Length: 1527bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 12-MAR-2015
Organism Homo sapiens (human)
Product collagen alpha-2(IX) chain isoform X4
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_032977.10) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 107 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
ATGAAAGGTC CCCCAGGGCT GCAGGGAGTG AAGGGGCATG CGGGCAAACG CGGGATTCTG 
GGTGATCCTG GCCACCAGGG GAAGCCGGGT CCCAAGGGAG ATGTGGGTGC CTCTGGAGAG
CAAGGCATCC CTGGACCACC GGGTCCCCAG GGCATCAGGG GCTACCCAGG CATGGCAGGG
CCCAAGGGAG AGACGGGCCC TCATGGATAT AAAGGCATGG TGGGCGCTAT CGGTGCCACT
GGGCCACCGG GTGAGGAAGG TCCTAGGGGA CCGCCAGGCC GAGCTGGGGA GAAGGGTGAC
GAGGGCAGCC CAGGTATTCG TGGACCCCAG GGGATCACAG GCCCGAAAGG AGCAACGGGC
CCCCCAGGCA TCAACGGCAA GGATGGGACC CCAGGCACGC CTGGCATGAA GGGCAGTGCA
GGACAGGCGG GACAGCCCGG AAGTCCAGGC CACCAGGGCC TAGCGGGTGT GCCAGGCCAG
CCTGGGACAA AAGGAGGCCC TGGAGACCAG GGTGAGCCGG GCCCGCAGGG CCTTCCTGGA
TTCTCTGGTC CCCCTGGGAA AGAGGGAGAG CCAGGGCCTC GAGGAGAAAT TGGTCCCCAG
GGCATCATGG GACAGAAGGG TGACCAAGGC GAGAGGGGTC CAGTGGGGCA ACCAGGCCCT
CAGGGAAGGC AGGGCCCTAA GGGGGAGCAG GGCCCCCCCG GAATTCCAGG GCCCCAAGGC
TTGCCAGGCG TCAAAGGAGA CAAGGGCTCC CCAGGGAAGA CCGGGCCCCG CGGCAAAGTG
GGTGACCCAG GGGTGGCCGG CCTCCCCGGA GAGAAAGGCG AGAAGGGCGA GTCCGGCGAG
CCGGGGCCCA AGGGACAGCA AGGAGTACGT GGAGAACCCG GCTACCCTGG CCCCAGCGGG
GATGCGGGCG CCCCAGGGGT TCAGGGCTAC CCTGGTCCCC CCGGCCCTCG AGGACTGGCC
GGGAACCGAG GCGTGCCAGG ACAGCCCGGG AGACAGGGCG TGGAGGGCCG GGATGCCACT
GACCAGCACA TCGTGGATGT GGCGCTGAAG ATGCTGCAAG AGCAACTGGC AGAGGTCGCC
GTGAGTGCCA AGCGGGAAGC CCTGGGTGCG GTGGGCATGA TGGGTCCTCC AGGACCTCCT
GGGCCCCCTG GGTACCCAGG CAAGCAGGGC CCCCATGGGC ACCCTGGCCC TCGGGGCGTT
CCTGGCATCG TGGGAGCCGT GGGTCAGATC GGCAACACGG GGCCCAAGGG AAAACGTGGA
GAGAAGGGTG ATCCAGGAGA AGTGGGACGG GGGCACCCCG GGATGCCTGG GCCCCCAGGG
ATCCCAGGAC TCCCTGGCCG GCCTGGCCAG GCAATCAACG GCAAGGATGG AGATCGAGGG
TCCCCAGGGG CTCCAGGAGA GGCAGGTCGA CCTGGCCTGC CAGGCCCCGT GGGGCTGCCG
GGCTTCTGTG AACCTGCCGC CTGCCTTGGA GCTTCGGCCT ATGCCTCTGC CCGCCTTACA
GAGCCTGGAT CCATCAAGGG GCCTTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_011539019.1
CDS1503..3029
Misc Feature(1)1734..1907(+)
Misc Feature(2)1941..2117(+)
Misc Feature(3)2040..2201(+)
Misc Feature(4)2235..2408(+)
Translation
Position Chain Variation Link
14 14 c, t dbSNP:2747512
39 39 a, t dbSNP:142602550
46 46 a, t dbSNP:772828133
47 47 a, c dbSNP:184004294
61 61 a, g dbSNP:546529360
103 103 g, t dbSNP:531687731
118 118 c, t dbSNP:532542808
147 147 a, g dbSNP:563131648
203 203 c, t dbSNP:543244746
223 223 c, t dbSNP:374151065
234 234 a, g dbSNP:209922
253 253 a, g dbSNP:540638378
261 261 c, g dbSNP:781355043
272 272 a, g dbSNP:572019382
273 273 a, g dbSNP:558324504
275 275 -, g dbSNP:35689189
286 286 a, g dbSNP:117353185
292 292 a, c dbSNP:747086847
296 296 c, t dbSNP:576245699
301 301 g, t dbSNP:147567795
317 317 c, t dbSNP:557574856
349 349 a, t dbSNP:537670117
350 350 c, t dbSNP:568736259
361 361 c, g dbSNP:209921
383 383 c, t dbSNP:758557395
429 429 a, c dbSNP:181880127
460 460 c, t dbSNP:750803034
595 595 a, g dbSNP:12132506
620 620 a, c dbSNP:148852798
624 624 c, t dbSNP:176686
663 663 a, c dbSNP:190222462
665 665 c, g dbSNP:3895059
678 678 a, g dbSNP:532451741
681 681 c, t dbSNP:176685
696 696 g, t dbSNP:753341843
704 704 a, g dbSNP:193238892
707 707 a, g dbSNP:760465302
711 711 a, g dbSNP:200424850
720 720 -, c dbSNP:761125486
721 721 g, t dbSNP:752669612
735 735 -, c dbSNP:147470756
740 740 a, g dbSNP:754348378
742 742 a, g dbSNP:759339883
747 747 c, g dbSNP:774746956
754 754 c, t dbSNP:374210090
768 768 g, t dbSNP:755595666
770 770 a, g dbSNP:752583449
775 775 c, t dbSNP:754221348
783 783 c, t dbSNP:377589006
801 801 c, t dbSNP:767523458
810 810 a, g dbSNP:756634659
814 814 c, t dbSNP:748908933
815 815 a, g dbSNP:376234058
833 833 c, t dbSNP:375150574
834 834 a, c dbSNP:747646622
837 837 a, t dbSNP:565528937
838 838 c, t dbSNP:143528915
846 846 -, tgggccaga dbSNP:767763762
846 846 a, c, g dbSNP:200737977
847 847 a, c, t dbSNP:372936826
848 848 a, g dbSNP:376722979
856 856 c, t dbSNP:372016237
857 857 a, g dbSNP:776728239
907 907 a, c dbSNP:778538501
915 915 a, t dbSNP:757569443
920 920 a, g dbSNP:776441743
928 928 c, t dbSNP:144072834
929 929 a, g dbSNP:760368550
930 930 a, g dbSNP:775128466
942 942 c, t dbSNP:771473898
946 946 c, t dbSNP:555650940
949 949 c, g dbSNP:770620030
951 951 g, t dbSNP:143008970
952 952 a, t dbSNP:770793938
954 954 c, t dbSNP:763825965
955 955 a, g dbSNP:201859264
958 958 c, t dbSNP:781228778
959 959 c, g dbSNP:755106661
968 968 c, g dbSNP:747104088
969 969 c, g dbSNP:780149118
977 977 a, c dbSNP:555035046
992 992 a, g dbSNP:750948814
999 999 a, g dbSNP:140071740
1003 1003 -, g dbSNP:774408187
1009 1009 c, t dbSNP:757633582
1019 1019 a, g dbSNP:752428599
1029 1029 g, t dbSNP:550270497
1043 1043 g, t dbSNP:536797172
1048 1048 a, g dbSNP:372723679
1059 1059 c, t dbSNP:569099952
1109 1109 a, c dbSNP:549587027
1141 1141 c, g dbSNP:529538105
1177 1177 g, t dbSNP:189809661
1178 1178 c, t dbSNP:185878911
1187 1187 c, g dbSNP:56001062
1201 1201 c, g dbSNP:769236091
1207 1207 -, a dbSNP:397979955
1207 1207 a, c dbSNP:75916590
1221 1221 -, a dbSNP:34036643
1221 1221 a, t dbSNP:766835007
1222 1222 -, a dbSNP:557307638
1224 1224 a, t dbSNP:147016699
1239 1239 a, g dbSNP:564522992
1240 1240 a, g dbSNP:544718069
1248 1248 a, g dbSNP:115443269
1256 1256 c, t dbSNP:60635892
1265 1265 c, t dbSNP:209918
1271 1271 -, c dbSNP:771050593
1271 1271 c, g, t dbSNP:773776487
1273 1273 -, a dbSNP:749322524
1273 1273 g, t dbSNP:573026800
1275 1275 g, t dbSNP:762936829
1286 1286 c, t dbSNP:773065995
1301 1301 c, t dbSNP:769607970
1303 1303 a, g dbSNP:78091688
1307 1307 a, c, g dbSNP:1979785
1308 1308 c, t dbSNP:747246514
1310 1310 c, t dbSNP:201709352
1312 1312 -, ct dbSNP:773135476
1315 1315 c, t dbSNP:11207843
1326 1326 c, t dbSNP:369407377
1333 1333 c, g dbSNP:779524087
1335 1335 a, c dbSNP:146903539
1339 1339 c, t dbSNP:200808068
1349 1349 c, t dbSNP:754207553
1357 1357 c, t dbSNP:148136289
1362 1362 a, g dbSNP:754653233
1366 1366 a, g dbSNP:751212530
1375 1375 a, g dbSNP:765888901
1376 1376 a, g dbSNP:762408011
1387 1387 a, g dbSNP:756445062
1399 1399 a, c dbSNP:751242599
1400 1400 a, g dbSNP:779631674
1402 1402 c, t dbSNP:745373699
1403 1403 a, g dbSNP:749975211
1406 1406 a, g dbSNP:764719071
1407 1407 a, c, t dbSNP:753748970
1414 1414 a, g dbSNP:763798270
1417 1417 c, t dbSNP:77937237
1419 1419 c, t dbSNP:375685025
1429 1429 a, c dbSNP:775879938
1434 1434 c, g dbSNP:777035204
1435 1435 a, g dbSNP:143965571
1439 1439 a, g dbSNP:745522018
1443 1443 a, t dbSNP:553645941
1456 1456 c, t dbSNP:756743515
1463 1463 a, c dbSNP:748881230
1468 1468 c, t dbSNP:146672981
1472 1472 a, t dbSNP:756191230
1475 1475 c, t dbSNP:201819837
1479 1479 c, t dbSNP:751408782
1490 1490 c, t dbSNP:563257155
1493 1493 c, t dbSNP:758704701
1497 1497 a, c dbSNP:750549213
1499 1499 c, t dbSNP:756880415
1500 1500 a, g dbSNP:761837402
1503 1503 a, g dbSNP:113549021
1508 1508 a, g dbSNP:764636136
1512 1512 c, g dbSNP:761059218
1516 1516 -, cc dbSNP:749888464
1521 1521 a, c dbSNP:139455364
1527 1527 g, t dbSNP:554314188
1530 1530 a, g dbSNP:369700719
1535 1535 a, g dbSNP:762681124
1538 1538 a, g dbSNP:757450923
1543 1543 a, c, t dbSNP:764157850
1544 1544 a, g dbSNP:756707028
1545 1545 a, g dbSNP:753088253
1551 1551 c, t dbSNP:767929481
1552 1552 a, g dbSNP:759781792
1553 1553 c, t dbSNP:368775817
1571 1571 -, cct dbSNP:778437735
1574 1574 a, c dbSNP:765020647
1581 1581 c, g dbSNP:761552379
1588 1588 c, t dbSNP:199831035
1603 1603 a, g dbSNP:761570761
1607 1607 c, g dbSNP:776355717
1618 1618 c, g dbSNP:774328643
1621 1621 a, g dbSNP:763686661
1626 1626 a, g dbSNP:760052148
1641 1641 c, t dbSNP:370064150
1642 1642 c, t dbSNP:751487740
1643 1643 a, g dbSNP:147480957
1647 1647 c, t dbSNP:763700283
1648 1648 c, t dbSNP:760341544
1653 1653 a, g dbSNP:139013993
1658 1658 c, t dbSNP:767043817
1664 1664 c, t dbSNP:529508967
1670 1670 a, g dbSNP:759486624
1673 1673 c, g, t dbSNP:770743976
1683 1683 c, t dbSNP:762688830
1690 1690 a, g dbSNP:773038976
1696 1696 c, t dbSNP:2228565
1700 1700 a, c dbSNP:747133313
1701 1701 a, c, g dbSNP:772771389
1706 1706 c, g, t dbSNP:747499674
1718 1718 c, t dbSNP:757575585
1722 1722 a, g dbSNP:747788076
1727 1727 c, t dbSNP:150444024
1728 1728 a, g dbSNP:369221204
1731 1731 a, g dbSNP:751113614
1733 1733 c, t dbSNP:765872341
1734 1734 a, g dbSNP:148362133
1750 1750 c, t dbSNP:534724125
1751 1751 a, g dbSNP:764969929
1757 1757 a, g dbSNP:757111279
1761 1761 a, g dbSNP:753732622
1762 1762 a, g dbSNP:763966106
1774 1774 c, t dbSNP:760992606
1775 1775 a, g, t dbSNP:767738040
1782 1782 c, t dbSNP:759612204
1783 1783 a, g dbSNP:752496710
1790 1790 a, g dbSNP:376517036
1791 1791 a, g dbSNP:561050736
1802 1802 c, t dbSNP:140305893
1803 1803 a, g dbSNP:767307495
1804 1804 a, c dbSNP:770075367
1805 1805 a, g dbSNP:746692571
1812 1812 c, t dbSNP:762209791
1821 1821 c, t dbSNP:776949373
1822 1822 a, g dbSNP:771823937
1834 1834 a, g dbSNP:745492026
1838 1838 c, g dbSNP:371503621
1843 1843 c, g dbSNP:770282352
1846 1846 c, t dbSNP:749271511
1847 1847 a, g dbSNP:376866320
1858 1858 c, t dbSNP:756099117
1859 1859 a, g dbSNP:752584833
1861 1861 a, g dbSNP:372191928
1864 1864 c, g, t dbSNP:369110014
1868 1868 a, c dbSNP:747275231
1877 1877 c, t dbSNP:376991606
1878 1878 a, g dbSNP:184896618
1883 1883 a, g dbSNP:560574843
1886 1886 g, t dbSNP:200290031
1892 1892 a, c dbSNP:757772360
1900 1900 c, t dbSNP:754230024
1901 1901 a, g dbSNP:144615318
1914 1914 a, g dbSNP:758677057
1928 1928 a, g dbSNP:746031866
1930 1930 c, t dbSNP:372004899
1931 1931 a, g dbSNP:369479941
1935 1935 ca, tg dbSNP:137853213
1935 1935 a, c, t dbSNP:12077871
1936 1936 a, c, g, t dbSNP:2228564
1940 1940 a, c, t dbSNP:140834689
1941 1941 a, g dbSNP:199733570
1945 1945 c, g dbSNP:772935733
1954 1954 a, c dbSNP:555032997
1962 1962 c, g dbSNP:2228567
1964 1964 a, g dbSNP:761276112
1966 1966 a, c, t dbSNP:150075912
1967 1967 a, g dbSNP:760647943
1969 1969 c, g dbSNP:199502479
1972 1972 c, t dbSNP:751909501
1977 1977 a, g dbSNP:753194894
1982 1982 a, g dbSNP:781695990
1984 1984 c, g dbSNP:755357677
2000 2000 c, t dbSNP:138882727
2008 2008 a, g dbSNP:765020486
2013 2013 g, t dbSNP:755507989
2014 2014 g, t dbSNP:752033124
2020 2020 c, t dbSNP:201772619
2021 2021 a, g dbSNP:6676013
2022 2022 a, g dbSNP:138592408
2023 2023 g, t dbSNP:763541825
2026 2026 c, g dbSNP:760181989
2027 2027 a, g dbSNP:752181922
2046 2046 c, t dbSNP:113880922
2047 2047 c, g dbSNP:767484378
2050 2050 c, g dbSNP:759466010
2052 2052 c, t dbSNP:774190227
2053 2053 a, c dbSNP:777747401
2071 2071 a, g dbSNP:751436539
2082 2082 c, g dbSNP:375476174
2083 2083 a, g dbSNP:370682522
2088 2088 a, g dbSNP:568502918
2097 2097 a, c dbSNP:554648154
2106 2106 a, g dbSNP:762110744
2109 2109 a, c dbSNP:145327896
2111 2111 a, g dbSNP:376482899
2121 2121 g, t dbSNP:775401012
2123 2123 g, t dbSNP:772704366
2130 2130 a, g dbSNP:747278976
2132 2132 c, t dbSNP:200428596
2145 2145 g, t dbSNP:774793213
2147 2147 a, g dbSNP:201054854
2159 2159 a, c dbSNP:747832673
2177 2177 c, t dbSNP:774683294
2178 2178 a, c dbSNP:565855414
2180 2180 a, t dbSNP:763361168
2182 2182 a, g dbSNP:773538596
2183 2183 a, g, t dbSNP:746580819
2191 2191 a, g dbSNP:558295752
2192 2192 g, t dbSNP:771439599
2195 2195 a, c dbSNP:745839653
2196 2196 c, t dbSNP:201985170
2201