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PAX9 paired box 9 [Homo sapiens (human)]

Gene Symbol PAX9
Entrez Gene ID 5083
Full Name paired box 9
Synonyms STHAG3
General protein information
Preferred Names
paired box protein Pax-9
Names
paired box protein Pax-9
paired domain gene 9
Gene Type protein-coding
Organism Homo sapiens (human)
Genome

14

14q13.3

Summary This gene is a member of the paired box (PAX) family of transcription factors. Members of this gene family typically contain a paired box domain, an octapeptide, and a paired-type homeodomain. These genes play critical roles during fetal development and cancer growth. The specific function of the paired box 9 gene is unknown but it may involve development of stratified squamous epithelia as well as various organs and skeletal elements. [provided by RefSeq, Jul 2008]. lac of sum
Disorder MIM:

167416

Disorder Html: Tooth agenesis, selective, 3, 604625 (3)





The following PAX9 gene sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PAX9 gene which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

CloneID RefSeq Accession Definition **Vector *Turnaround time Price Select
OHu22291 NM_006194 Homo sapiens paired box 9 (PAX9), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $379

*Business Day
**You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.


CloneID OHu22291
Accession Version NM_006194.3 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 1026bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector Document: User manual_GenEZ ORF Clone Products.pdf (pdf)
Clone information Clone Map
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags Document: MSDS_GenEZ ORF Clone Products.pdf (pdf)
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 15-MAR-2015
Organism Homo sapiens (human)
Product paired box protein Pax-9
Comment REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from DB233208.1, DB196800.1, BC001159.1, AL079303.3 and AB248958.1. This sequence is a reference standard in the RefSeqGene project. On or before Aug 31, 2013 this sequence version replaced gi:530403885, gi:154350239. Summary: This gene is a member of the paired box (PAX) family of transcription factors. Members of this gene family typically contain a paired box domain, an octapeptide, and a paired-type homeodomain. These genes play critical roles during fetal development and cancer growth. The specific function of the paired box 9 gene is unknown but it may involve development of stratified squamous epithelia as well as various organs and skeletal elements. [provided by RefSeq, Jul 2008]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## CDS exon combination :: AB248958.1, BC001159.1 [ECO:0000331] RNAseq introns :: single sample supports all introns SAMEA1968832, SAMEA2145240 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
ATGGAGCCAG CCTTCGGGGA GGTGAACCAG CTGGGAGGAG TGTTCGTGAA CGGGAGGCCG 
CTGCCCAACG CCATCCGGCT TCGCATCGTG GAACTGGCCC AACTGGGCAT CCGACCGTGT
GACATCAGCC GCCAGCTACG GGTCTCGCAC GGCTGCGTCA GCAAGATCCT GGCGCGATAC
AACGAGACGG GCTCGATCTT GCCAGGAGCC ATCGGGGGCA GCAAGCCCCG GGTCACTACC
CCCACCGTGG TGAAACACAT CCGGACCTAC AAGCAGAGAG ACCCCGGCAT CTTCGCCTGG
GAGATCCGGG ACCGCCTGCT GGCGGACGGC GTGTGCGACA AGTACAATGT GCCCTCCGTG
AGCTCCATCA GCCGCATTCT GCGCAACAAG ATCGGCAACT TGGCCCAGCA GGGTCATTAC
GACTCATACA AGCAGCACCA GCCGACGCCG CAGCCAGCGC TGCCCTACAA CCACATCTAC
TCGTACCCCA GCCCTATCAC GGCGGCGGCC GCCAAGGTGC CCACGCCACC CGGGGTGCCT
GCCATCCCCG GTTCGGTGGC CATGCCGCGC ACCTGGCCCT CCTCGCACTC CGTCACCGAC
ATCCTGGGCA TCCGCTCCAT CACCGACCAA GTGAGCGACA GCTCCCCCTA CCACAGCCCC
AAGGTGGAGG AGTGGAGCAG CCTGGGCCGC AACAACTTCC CCGCCGCCGC CCCGCACGCG
GTGAACGGGT TGGAGAAGGG AGCCCTGGAG CAGGAAGCCA AGTACGGTCA GGCACCAAAT
GGTCTCCCAG CTGTGGGCAG TTTTGTGTCA GCATCCAGCA TGGCTCCTTA CCCTACCCCA
GCCCAAGTGT CGCCTTACAT GACCTACAGT GCTGCTCCTT CTGGTTATGT TGCTGGACAT
GGGTGGCAAC ATGCTGGGGG CACCTCATTG TCTCCCCACA ACTGTGACAT TCCGGCATCG
CTGGCGTTCA AGGGAATGCA GGCAGCCAGA GAAGGTAGTC ATTCTGTCAC GGCTTCCGCG
CTCTGA
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeqNP_006185.1
CDS727..1752
Misc Feature(1)658..660(+)
Misc Feature(2)742..1119(+)
Misc Feature(3)751..1110(+)
Misc Feature(4)802..1110(+)
Misc Feature(5)1228..1293(+)
Exon (1)1..333
Gene:PAX9
Gene Synonym:
Exon (2)334..730
Gene:PAX9
Gene Synonym:
Exon (3)731..1357
Gene:PAX9
Gene Synonym:
Exon (4)1358..1497
Gene:PAX9
Gene Synonym:
Exon (5)1498..3107
Gene:PAX9
Gene Synonym:
Translation
Position Chain Variation Link
8 8 c, t dbSNP:147254306
16 16 g, t dbSNP:149623673
18 18 a, t dbSNP:751383854
36 36 c, g dbSNP:564393291
46 46 a, c dbSNP:761667667
47 47 g, t dbSNP:375641068
71 71 c, g dbSNP:374248332
83 83 a, g dbSNP:147293671
99 99 -, c dbSNP:11373281
101 101 -, c dbSNP:397830943
164 164 c, t dbSNP:549318153
174 174 a, c dbSNP:750417470
239 239 c, t dbSNP:756143266
267 267 c, t dbSNP:780220901
272 272 c, g dbSNP:4904155
284 284 g, t dbSNP:755251970
289 289 a, t dbSNP:188648745
303 303 c, t dbSNP:552855476
313 313 c, t dbSNP:566271839
330 330 g, t dbSNP:535211587
368 368 a, c dbSNP:540112665
392 392 -, t dbSNP:539902743
402 402 c, g dbSNP:770732433
406 406 a, c dbSNP:780901065
417 417 a, g dbSNP:539974376
487 487 c, t dbSNP:571244070
509 509 a, g, t dbSNP:533579629
515 515 a, g dbSNP:554429944
550 550 a, t dbSNP:567657540
552 552 c, g dbSNP:144429269
597 597 c, t dbSNP:556338561
623 623 c, t dbSNP:375990805
656 656 a, t dbSNP:545501764
679 679 -, t dbSNP:770056272
691 691 c, t dbSNP:775650832
693 693 c, g dbSNP:558654407
697 697 c, t dbSNP:572384078
704 704 a, g dbSNP:201198716
706 706 a, g dbSNP:751280506
709 709 a, g dbSNP:759334379
710 710 g, t dbSNP:369190149
732 732 a, g dbSNP:770389639
738 738 c, t dbSNP:778384288
749 749 g, t dbSNP:530304091
756 756 a, g dbSNP:146561842
766 766 a, g dbSNP:770506286
771 771 c, t dbSNP:773877041
772 772 g, t dbSNP:746553247
777 777 c, t dbSNP:745522921
783 783 a, g dbSNP:771813254
788 788 c, t dbSNP:28933970
796 796 g, t dbSNP:775325094
802 802 c, t dbSNP:28933972
809 809 c, g dbSNP:28933971
813 813 a, c dbSNP:760422709
820 820 c, t dbSNP:550043289
836 836 c, t dbSNP:776496826
838 838 a, c, t dbSNP:763028737
843 843 a, g dbSNP:751783950
865 865 c, t dbSNP:121917720
867 867 a, g dbSNP:755202726
873 873 a, g dbSNP:767808742
876 876 c, t dbSNP:753143072
877 877 a, g dbSNP:104894469
882 882 c, t dbSNP:200418409
910 910 a, g dbSNP:778437280
914 914 c, g dbSNP:749743496
915 915 c, g dbSNP:756776471
918 918 c, t dbSNP:200688741
921 921 g, t dbSNP:745548814
936 936 a, c, t dbSNP:372642425
942 942 c, g dbSNP:746823467
948 948 c, t dbSNP:768375990
951 951 a, g dbSNP:776619661
963 963 c, t dbSNP:554109934
985 985 a, t dbSNP:104894468
997 997 a, g dbSNP:28933373
1000 1000 a, c dbSNP:761722767
1008 1008 a, c dbSNP:766415264
1020 1020 c, t dbSNP:539215047
1021 1021 g, t dbSNP:759490130
1023 1023 c, t dbSNP:767802249
1040 1040 a, g dbSNP:752908209
1044 1044 a, g dbSNP:756550844
1049 1049 c, t dbSNP:748361932
1063 1063 a, c, g dbSNP:375546483
1066 1066 a, c, t dbSNP:104894467
1069 1069 c, t dbSNP:779248666
1077 1077 a, g dbSNP:745406799
1083 1083 c, t dbSNP:757793566
1084 1084 a, g dbSNP:779689583
1093 1093 a, g dbSNP:746663945
1096 1096 a, g dbSNP:768500570
1108 1108 a, c, t dbSNP:780940855
1113 1113 a, c dbSNP:769798510
1119 1119 a, c, g dbSNP:772970706
1124 1124 a, g dbSNP:771977086
1128 1128 g, t dbSNP:775918897
1129 1129 a, g dbSNP:760959243
1135 1135 c, t dbSNP:764595344
1142 1142 a, g dbSNP:754287422
1154 1154 a, g dbSNP:139008563
1162 1162 c, g dbSNP:765791266
1163 1163 a, c dbSNP:750832505
1164 1164 c, g dbSNP:757996388
1166 1166 a, g dbSNP:369478673
1180 1180 c, t dbSNP:779529500
1184 1184 a, c, t dbSNP:773508045
1185 1185 c, g dbSNP:201901512
1189 1189 c, g dbSNP:747994128
1199 1199 a, g dbSNP:769417655
1204 1204 -, tactcg dbSNP:764941899
1209 1209 a, c, g, t dbSNP:761015279
1218 1218 c, t dbSNP:772335439
1224 1224 a, c, t dbSNP:775681794
1226 1226 -, cgg dbSNP:750103947
1226 1226 a, c dbSNP:769021972
1230 1230 a, g dbSNP:776661073
1233 1233 a, g, t dbSNP:762246128
1237 1237 a, g dbSNP:143020311
1240 1240 a, c dbSNP:763349761
1242 1242 a, g dbSNP:61734510
1250 1250 c, t dbSNP:370909756
1251 1251 a, g dbSNP:754431363
1252 1252 c, t dbSNP:767167192
1256 1256 c, t dbSNP:752223751
1257 1257 c, t dbSNP:373446060
1260 1260 a, g dbSNP:777416428
1261 1261 g, t dbSNP:376393242
1264 1264 c, t dbSNP:757294221
1276 1276 a, g dbSNP:778946289
1280 1280 c, g dbSNP:370477014
1281 1281 a, g dbSNP:373560196
1285 1285 a, g dbSNP:554969436
1288 1288 a, g dbSNP:776983499
1293 1293 a, g dbSNP:748307926
1295 1295 a, g, t dbSNP:368669343
1297 1297 a, g dbSNP:763261408
1300 1300 c, t dbSNP:766889588
1303 1303 c, g dbSNP:774778386
1310 1310 c, t dbSNP:371143144
1312 1312 c, t dbSNP:767010050
1315 1315 -, ccgtca dbSNP:762507360
1317 1317 c, t dbSNP:752450876
1326 1326 c, t dbSNP:755698555
1330 1330 c, t dbSNP:763764019
1332 1332 a, g dbSNP:753599757
1333 1333 a, g, t dbSNP:757061208
1335 1335 c, t dbSNP:61754301
1339 1339 c, t dbSNP:755171552
1340 1340 g, t dbSNP:374534090
1345 1345 a, g dbSNP:748445890
1349 1349 a, c, g dbSNP:116676854
1351 1351 c, g dbSNP:749662886
1366 1366 a, g dbSNP:375436662
1371 1371 c, t dbSNP:766239217
1373 1373 c, t dbSNP:751443373
1379 1379 a, g dbSNP:756212377
1382 1382 a, g dbSNP:777895216
1383 1383 c, t dbSNP:754108349
1384 1384 c, t dbSNP:757438363
1388 1388 a, c dbSNP:779059411
1395 1395 c, g dbSNP:746246932
1405 1405 a, c dbSNP:199777734
1409 1409 c, t dbSNP:780494094
1410 1410 a, g dbSNP:144333747
1411 1411 c, g dbSNP:768103405
1414 1414 a, c, t dbSNP:776254475
1415 1415 a, g dbSNP:368787836
1419 1419 c, t dbSNP:374572267
1423 1423 c, t dbSNP:200733091
1428 1428 c, t dbSNP:762657544
1434 1434 c, t dbSNP:551285943
1438 1438 a, c dbSNP:774212071
1439 1439 c, g dbSNP:759493655
1443 1443 c, g, t dbSNP:12881240
1444 1444 c, g dbSNP:4904210
1445 1445 c, t dbSNP:529235901
1447 1447 a, g dbSNP:750655844
1476 1476 g, t dbSNP:200344655
1494 1494 c, t dbSNP:780447726
1500 1500 a, t dbSNP:750664427
1501 1501 c, t dbSNP:145974094
1507 1507 a, g dbSNP:766474912
1508 1508 c, g dbSNP:751979591
1555 1555 c, t dbSNP:755333152
1566 1566 a, c dbSNP:781764694
1576 1576 a, t dbSNP:748658101
1578 1578 a, g dbSNP:755740078
1580 1580 c, t dbSNP:777314709
1585 1585 a, g dbSNP:201709294
1586 1586 a, t dbSNP:770648636
1598 1598 c, t dbSNP:775496217
1600 1600 a, g dbSNP:773825763
1601 1601 c, g dbSNP:745682184
1603 1603 c, t dbSNP:771849784
1605 1605 g, t dbSNP:775465600
1606 1606 g, t dbSNP:760586017
1617 1617 c, t dbSNP:769905703
1625 1625 a, g dbSNP:773374693
1630 1630 c, t dbSNP:762897043
1652 1652 c, t dbSNP:766641150
1655 1655 g, t dbSNP:543851630
1656 1656 c, g dbSNP:116602527
1657 1657 g, t dbSNP:751662995
1658 1658 c, t dbSNP:760041338
1662 1662 a, c dbSNP:760820570
1668 1668 c, t dbSNP:767977942
1675 1675 a, g, t dbSNP:139883801
1678 1678 c, t dbSNP:756657081
1679 1679 c, t dbSNP:372101496
1685 1685 c, g, t dbSNP:771366081
1686 1686 a, g dbSNP:576076631
1692 1692 a, g dbSNP:563731743
1705 1705 c, t dbSNP:745507886
1711 1711 a, g dbSNP:771904928
1720 1720 g, t dbSNP:779795962
1732 1732 c, g dbSNP:746768464
1733 1733 c, t dbSNP:768607356
1736 1736 c, t dbSNP:776377834
1739 1739 c, t dbSNP:763088741
1743 1743 c, t dbSNP:770907742
1746 1746 c, g dbSNP:532670214
1749 1749 a, c dbSNP:12887746
1753 1753 c, t dbSNP:759806958
1764 1764 a, g, t dbSNP:188638197
1772 1772 c, g dbSNP:761072160
1776 1776 a, t dbSNP:566060700
1783 1783 a, g dbSNP:754297349
1790 1790 c, t dbSNP:367709886
1797 1797 c, t dbSNP:778266803
1801 1801 a, g dbSNP:750117107
1802 1802 c, t dbSNP:758080963
1810 1810 c, t dbSNP:535054223
1811 1811 c, g dbSNP:547367884
1812 1812 c, t dbSNP:181408965
1818 1818 c, g dbSNP:536017500
1820 1820 a, c dbSNP:555952749
1822 1822 g, t dbSNP:575701715
1827 1827 a, g dbSNP:538324536
1855 1855 g, t dbSNP:558264939
1873 1873 c, t dbSNP:571697845
1947 1947 c, t dbSNP:770675967
1948 1948 c, g dbSNP:186877662
1958 1958 c, t dbSNP:17104962
1977 1977 c, g dbSNP:760143460
1983 1983 g, t dbSNP:541916401
2002 2002 a, t dbSNP:773998473
2011 2011 c, t dbSNP:17104965
2012 2012 c, g dbSNP:112616603
2015 2015 a, g dbSNP:563894653
2040 2040 c, g dbSNP:767260010
2069 2069 g, t dbSNP:750143933
2096 2096 -, at dbSNP:748540311
2105 2105 c, t dbSNP:530578050
2113 2113 a, t dbSNP:765038650
2147 2147 a, g dbSNP:532783450
2181 2181 c, t dbSNP:17766200
2202 2202 c, t dbSNP:559930165
2226 2226 c, t dbSNP:528475626
2258 2258 a, g dbSNP:191674536
2263 2263 c, t dbSNP:567411185
2267 2267 -, ttgt dbSNP:564902020
2271 2271 g, t dbSNP:113372817
2295 2295 g, t dbSNP:536567459
2306 2306 c, g dbSNP:72679753
2329 2329 a, c dbSNP:569498209
2352 2352 c, t dbSNP:538485809
2377 2377 a, g dbSNP:558226307
2392 2392 g, t dbSNP:372490483
2494 2494 a, t dbSNP:565771835
2499 2499 c, g dbSNP:534282636
2518 2518 c, t dbSNP:752796911
2528 2528 a, g dbSNP:554566830
2534 2534 g, t dbSNP:528380626
2542 2542 c, t dbSNP:141899486
2556 2556 c, t dbSNP:758520767
2570 2570 c, t dbSNP:11847165
2586 2586 a, c, g dbSNP:557722366
2600 2600 a, g dbSNP:113144849
2653 2653 c, t dbSNP:17104971
2654 2654 a, g dbSNP:568062234
2672 2672 a, g dbSNP:528599592
2708 2708 a, c, t dbSNP:535549748
2710 2710 a, t dbSNP:369476667
2732 2732 c, g dbSNP:781627580
2760 2760 c, t dbSNP:541828183
2774 2774 c, t dbSNP:562090546
2792 2792 c, t dbSNP:746290327
2818 2818 a, c dbSNP:200113610
2824 2824 a, c dbSNP:770450964
2844 2844 -, c dbSNP:201941449
2861 2861 -, c dbSNP:771112799
2864 2864 a, g dbSNP:776191272
2880 2880 c, t dbSNP:747633777
2882 2882 a, g dbSNP:771777781
2970 2970 c, t dbSNP:570248545
3002 3002 c, t dbSNP:577698640
3020 3020 a, t dbSNP:114801240
3027 3027 a, g dbSNP:772986872
3034 3034 a, c dbSNP:373205266
3039 3039 a, g dbSNP:760390621
3045 3045 a, t dbSNP:755342188
3047 3047 c, t dbSNP:549653237
3085 3085 c, t dbSNP:766022557
3105 3105 a, g dbSNP:776522551

Target ORF information:

RefSeq Version NM_006194
Organism Homo sapiens (human)
Definition Homo sapiens paired box 9 (PAX9), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
NM_006194

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
ATGGAGCCAG CCTTCGGGGA GGTGAACCAG CTGGGAGGAG TGTTCGTGAA CGGGAGGCCG 
CTGCCCAACG CCATCCGGCT TCGCATCGTG GAACTGGCCC AACTGGGCAT CCGACCGTGT
GACATCAGCC GCCAGCTACG GGTCTCGCAC GGCTGCGTCA GCAAGATCCT GGCGCGATAC
AACGAGACGG GCTCGATCTT GCCAGGAGCC ATCGGGGGCA GCAAGCCCCG GGTCACTACC
CCCACCGTGG TGAAACACAT CCGGACCTAC AAGCAGAGAG ACCCCGGCAT CTTCGCCTGG
GAGATCCGGG ACCGCCTGCT GGCGGACGGC GTGTGCGACA AGTACAATGT GCCCTCCGTG
AGCTCCATCA GCCGCATTCT GCGCAACAAG ATCGGCAACT TGGCCCAGCA GGGTCATTAC
GACTCATACA AGCAGCACCA GCCGACGCCG CAGCCAGCGC TGCCCTACAA CCACATCTAC
TCGTACCCCA GCCCTATCAC GGCGGCGGCC GCCAAGGTGC CCACGCCACC CGGGGTGCCT
GCCATCCCCG GTTCGGTGGC CATGCCGCGC ACCTGGCCCT CCTCGCACTC CGTCACCGAC
ATCCTGGGCA TCCGCTCCAT CACCGACCAA GTGAGCGACA GCTCCCCCTA CCACAGCCCC
AAGGTGGAGG AGTGGAGCAG CCTGGGCCGC AACAACTTCC CCGCCGCCGC CCCGCACGCG
GTGAACGGGT TGGAGAAGGG AGCCCTGGAG CAGGAAGCCA AGTACGGTCA GGCACCAAAT
GGTCTCCCAG CTGTGGGCAG TTTTGTGTCA GCATCCAGCA TGGCTCCTTA CCCTACCCCA
GCCCAAGTGT CGCCTTACAT GACCTACAGT GCTGCTCCTT CTGGTTATGT TGCTGGACAT
GGGTGGCAAC ATGCTGGGGG CACCTCATTG TCTCCCCACA ACTGTGACAT TCCGGCATCG
CTGGCGTTCA AGGGAATGCA GGCAGCCAGA GAAGGTAGTC ATTCTGTCAC GGCTTCCGCG
CTCTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.