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POU6F1 POU class 6 homeobox 1 [Homo sapiens (human)]

Gene Symbol POU6F1
Entrez Gene ID 5463
Full Name POU class 6 homeobox 1
Synonyms BRN5, MPOU, TCFB1
General protein information
Preferred Names
POU domain, class 6, transcription factor 1
Names
POU domain, class 6, transcription factor 1
brn-5
brain-5
mPOU homeobox protein
brain-specific homeobox/POU domain protein 5
Gene Type protein-coding
Organism Homo sapiens (human)
Genome

12

12q13.13

Summary lac of sum
Disorder MIM:

Disorder Html:
CloneID RefSeq Accession Definition **Vector *Turnaround time Price
OHu12619 NM_002702 Homo sapiens POU class 6 homeobox 1 (POU6F1), transcript variant 1, mRNA. pcDNA3.1-C-(k)DYK In stock 5-7 Starting from $99.00

*Business Day
**You may select a custom vector to replace pcDNA3.1-C-(k)DYK after clone is added to cart.



CloneID OHu12619D
Sequence Information ORF Nucleotide Sequence (Length: 906bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 15-MAR-2015
Organism Homo sapiens (human)
Product POU domain, class 6, transcription factor 1
Comment VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL832881.1, BC051326.1, DA026332.1, DA084199.1, AC139768.14, BM703234.1, CK002954.1 and AW445212.1. On Feb 20, 2009 this sequence version replaced gi:57163992. Transcript Variant: This variant (1) represents the protein-coding transcript. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AL832881.1, BC051326.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2146411, SAMEA962337 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
ATGCCAGGGA TCAGCAGTCA GATCCTCACC AATGCTCAGG GACAGGTTAT TGGAACCCTT 
CCATGGGTAG TGAACTCAGC TAGTGTGGCG GCCCCAGCAC CAGCCCAAAG CCTGCAGGTC
CAGGCCGTGA CCCCCCAGCT GTTGTTGAAC GCCCAGGGCC AGGTGATTGC GACCCTGGCT
AGCAGCCCCC TGCCTCCACC TGTGGCTGTC CGGAAGCCAA GCACACCTGA GTCCCCTGCT
AAGAGTGAGG TGCAGCCCAT CCAGCCCACA CCAACCGTGC CCCAGCCTGC TGTGGTCATT
GCCAGCCCAG CTCCAGCCGC CAAGCCATCT GCCTCTGCTC CTATCCCAAT TACCTGCTCA
GAGACCCCCA CCGTCAGCCA GTTGGTGTCC AAGCCACATA CTCCAAGTCT GGATGAGGAT
GGGATCAACT TAGAAGAGAT CCGGGAGTTT GCCAAGAACT TTAAGATCCG GCGGCTCTCG
CTGGGCCTTA CACAGACCCA GGTGGGTCAG GCTCTGACTG CAACGGAAGG TCCAGCCTAC
AGCCAGTCAG CCATCTGCCG GTTCGAGAAG CTAGACATCA CACCCAAGAG TGCCCAGAAG
CTAAAGCCGG TGCTGGAAAA GTGGCTAAAC GAAGCTGAAC TGCGGAACCA GGAAGGCCAG
CAGAACCTGA TGGAGTTTGT GGGAGGCGAG CCCTCCAAGA AACGCAAACG CCGCACCTCC
TTCACCCCCC AGGCCATAGA GGCTCTCAAT GCCTATTTTG AGAAGAACCC ACTGCCCACA
GGCCAGGAGA TCACTGAAAT TGCTAAGGAG CTCAACTACG ACCGTGAGGT AGTGCGGGTC
TGGTTCTGCA ATCGGCGCCA GACGCTCAAG AACACCAGCA AGCTGAACGT CTTTCAGATC
CCTTAG
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqNP_002693.3
CDS483..1388
Misc Feature(1)114..116(+)
Misc Feature(2)897..1121(+)
Misc Feature(3)1185..1361(+)
Misc Feature(4)1185..1355(+)
Misc Feature(5)1191..1343(+)
Exon (1)1..398
Gene:POU6F1
Gene Synonym:
Exon (2)399..527
Gene:POU6F1
Gene Synonym:
Exon (3)528..731
Gene:POU6F1
Gene Synonym:
Exon (4)732..873
Gene:POU6F1
Gene Synonym:
Exon (5)874..1042
Gene:POU6F1
Gene Synonym:
Exon (6)1043..4699
Gene:POU6F1
Gene Synonym:
Translation
Position Chain Variation Link
15 15 a, c dbSNP:561842608
90 90 c, g dbSNP:563141596
165 165 g, t dbSNP:780062802
179 179 a, g dbSNP:375924107
195 195 c, t dbSNP:769986926
209 209 -, ctc dbSNP:759258825
211 211 c, t dbSNP:542060024
212 212 a, g dbSNP:576179402
247 247 c, t dbSNP:372129770
324 324 c, g dbSNP:556288593
328 328 a, c dbSNP:539576925
362 362 c, t dbSNP:542080450
382 382 c, t dbSNP:576902965
396 396 a, g dbSNP:781396261
413 413 a, c dbSNP:570049892
414 414 c, g dbSNP:551943884
416 416 c, t dbSNP:545651645
417 417 a, g dbSNP:532199072
442 442 c, t dbSNP:373820416
448 448 c, g dbSNP:764884908
465 465 a, c dbSNP:759998357
468 468 a, g dbSNP:777091576
470 470 a, c, t dbSNP:747564631
471 471 a, g dbSNP:151163072
474 474 a, g, t dbSNP:370576673
477 477 c, t dbSNP:752786540
498 498 a, t dbSNP:748196568
500 500 -, t dbSNP:750447738
503 503 g, t dbSNP:190687928
509 509 c, t dbSNP:747645803
516 516 a, g dbSNP:77905600
527 527 a, g dbSNP:781006552
534 534 a, g dbSNP:772576001
545 545 a, c dbSNP:761821897
546 546 c, t dbSNP:536914679
547 547 c, g dbSNP:768693205
550 550 g, t dbSNP:749562849
551 551 a, g dbSNP:780248166
564 564 a, t dbSNP:370748294
569 569 g, t dbSNP:181238666
571 571 c, t dbSNP:746759715
572 572 a, g dbSNP:575728452
580 580 c, t dbSNP:758311355
581 581 a, c dbSNP:558956093
593 593 a, c dbSNP:752542581
598 598 a, c dbSNP:778613085
600 600 c, g dbSNP:754520494
604 604 a, g dbSNP:753614578
608 608 c, t dbSNP:766065331
616 616 a, c dbSNP:761137767
618 618 a, c dbSNP:750755915
620 620 c, g dbSNP:767941840
629 629 a, g dbSNP:762423758
633 633 a, g dbSNP:147582637
639 639 a, g dbSNP:566358600
645 645 a, g dbSNP:768783399
652 652 c, t dbSNP:762951271
653 653 a, g dbSNP:775700754
663 663 a, g dbSNP:573552655
670 670 c, t dbSNP:746811516
673 673 a, t dbSNP:777659312
679 679 c, t dbSNP:771737920
687 687 c, g dbSNP:748171936
693 693 a, c, t dbSNP:201399148
694 694 a, g dbSNP:754543222
718 718 -, c dbSNP:765535249
732 732 g, t dbSNP:780706685
739 739 c, g dbSNP:757652919
753 753 -, cca dbSNP:760392195
754 754 a, c, t dbSNP:764615642
755 755 a, g dbSNP:539454556
757 757 c, t dbSNP:756973678
758 758 c, t dbSNP:765412173
759 759 a, g dbSNP:759527012
765 765 c, t dbSNP:776914221
768 768 c, t dbSNP:766456279
777 777 a, g dbSNP:758400796
784 784 a, c dbSNP:761694517
785 785 c, g dbSNP:774252359
788 788 a, c dbSNP:768539683
791 791 a, c dbSNP:570465920
796 796 c, t dbSNP:775556923
798 798 a, g dbSNP:373376949
799 799 c, g dbSNP:745311434
800 800 c, t dbSNP:145166430
801 801 a, g dbSNP:139629485
815 815 c, t dbSNP:147830095
821 821 c, t dbSNP:778155844
827 827 c, g dbSNP:758744787
830 830 a, g dbSNP:753267048
843 843 a, g dbSNP:779218050
848 848 c, t dbSNP:7136904
849 849 c, g, t dbSNP:766659331
852 852 a, c dbSNP:761023007
854 854 c, t dbSNP:376717396
855 855 a, g dbSNP:764039567
862 862 a, g dbSNP:762838757
864 864 c, t dbSNP:775504721
866 866 a, g dbSNP:769567569
885 885 c, t dbSNP:371835039
895 895 a, g dbSNP:139626786
925 925 a, g dbSNP:759436935
927 927 a, g dbSNP:776616999
941 941 c, t dbSNP:770494510
950 950 a, c dbSNP:150600315
951 951 c, t dbSNP:772862626
952 952 a, g dbSNP:769071082
953 953 a, g dbSNP:748578722
958 958 c, t dbSNP:774619835
961 961 c, t dbSNP:769043228
962 962 a, g dbSNP:367663714
965 965 a, g dbSNP:780609494
968 968 c, g dbSNP:756270693
1007 1007 a, g dbSNP:745887483
1021 1021 a, g dbSNP:781593552
1022 1022 -, c dbSNP:147563855
1041 1041 a, c, t dbSNP:751779343
1046 1046 c, g, t dbSNP:750339632
1076 1076 c, g dbSNP:767073212
1079 1079 a, g dbSNP:761385998
1090 1090 c, t dbSNP:375633440
1091 1091 a, c, g dbSNP:141839526
1112 1112 c, t dbSNP:139547928
1122 1122 c, g dbSNP:190452607
1125 1125 a, c, t dbSNP:760174579
1126 1126 a, g dbSNP:777269426
1139 1139 c, t dbSNP:770920189
1148 1148 a, c dbSNP:747052350
1152 1152 a, t dbSNP:777879447
1153 1153 a, c, t dbSNP:372234587
1157 1157 a, g dbSNP:779875255
1169 1169 c, t dbSNP:755891944
1181 1181 c, g dbSNP:568821208
1186 1186 a, g dbSNP:750427568
1194 1194 c, t dbSNP:781045016
1199 1199 c, t dbSNP:756735155
1200 1200 a, t dbSNP:751034499
1206 1206 a, g dbSNP:763478521
1210 1210 c, g dbSNP:762712145
1212 1212 c, g dbSNP:369846174
1216 1216 c, t dbSNP:765759986
1218 1218 a, c dbSNP:759912824
1222 1222 a, g dbSNP:200557831
1231 1231 a, g dbSNP:186003252
1244 1244 a, g dbSNP:771419285
1249 1249 a, c dbSNP:760698975
1258 1258 c, t dbSNP:773382895
1259 1259 a, c dbSNP:772024002
1260 1260 a, t dbSNP:532358965
1262 1262 a, g dbSNP:560057336
1271 1271 a, g dbSNP:2228250
1276 1276 c, g dbSNP:745607971
1284 1284 a, g dbSNP:781017453
1285 1285 c, t dbSNP:757180673
1292 1292 a, g dbSNP:751427570
1293 1293 c, t dbSNP:777397038
1301 1301 c, t dbSNP:757838631
1302 1302 a, g dbSNP:752398835
1305 1305 c, t dbSNP:764924709
1311 1311 a, g dbSNP:760000727
1335 1335 c, t dbSNP:754214069
1338 1338 c, t dbSNP:199706351
1345 1345 c, t dbSNP:771763739
1346 1346 a, g dbSNP:747910286
1361 1361 c, t dbSNP:773580496
1370 1370 c, t dbSNP:180748178
1371 1371 a, g dbSNP:761814812
1379 1379 c, g dbSNP:561315684
1382 1382 c, t dbSNP:544611750
1394 1394 a, g dbSNP:745697689
1395 1395 a, g dbSNP:575665716
1396 1396 c, t dbSNP:770617456
1397 1397 c, t dbSNP:747030096
1400 1400 -, t dbSNP:748910905
1409 1409 c, g dbSNP:137997442
1421 1421 c, t dbSNP:371004191
1426 1426 a, c dbSNP:747613255
1433 1433 a, g dbSNP:778737916
1436 1436 a, g dbSNP:201594593
1464 1464 a, g dbSNP:754861690
1503 1503 c, g dbSNP:749178230
1510 1510 a, g dbSNP:751703893
1512 1512 a, g dbSNP:766673954
1520 1520 a, g dbSNP:573397756
1522 1522 a, g dbSNP:762931503
1535 1535 a, g dbSNP:115051055
1536 1536 a, g dbSNP:550092818
1539 1539 c, t dbSNP:1126902
1555 1555 c, t dbSNP:533915098
1592 1592 c, t dbSNP:765412703
1593 1593 a, g dbSNP:764378971
1610 1610 a, g dbSNP:574190945
1622 1622 c, t dbSNP:762359993
1623 1623 a, g dbSNP:146938447
1641 1641 a, c dbSNP:561728182
1642 1642 a, g dbSNP:141150055
1660 1660 c, t dbSNP:568486262
1662 1662 a, g dbSNP:531367046
1668 1668 a, g dbSNP:552462808
1680 1680 g, t dbSNP:12321105
1794 1794 c, g dbSNP:777308324
1799 1799 c, g dbSNP:758759487
1826 1826 c, t dbSNP:566690066
1874 1874 c, t dbSNP:546476996
1875 1875 a, g dbSNP:373440989
1877 1877 a, c dbSNP:530257436
1904 1904 a, g dbSNP:188621755
1912 1912 c, t dbSNP:3490
1917 1917 a, g dbSNP:1126904
1927 1927 a, c dbSNP:747448806
1943 1943 a, g dbSNP:759824937
1949 1949 c, t dbSNP:777157499
1977 1977 a, g dbSNP:1126905
1983 1983 a, g dbSNP:371391428
2002 2002 c, t dbSNP:145443725
2010 2010 g, t dbSNP:772752172
2020 2020 -, gggat dbSNP:781613085
2049 2049 c, g dbSNP:73305801
2051 2051 c, t dbSNP:771712583
2055 2055 c, t dbSNP:149748726
2056 2056 a, g dbSNP:770681486
2081 2081 c, g dbSNP:560604672
2083 2083 c, t dbSNP:748892695
2124 2124 c, t dbSNP:777275938
2149 2149 c, t dbSNP:559943046
2155 2155 c, g dbSNP:542842970
2168 2168 a, g dbSNP:773875028
2176 2176 a, g dbSNP:768454591
2179 2179 a, g dbSNP:183891028
2200 2200 -, t dbSNP:34561796
2233 2233 -, a dbSNP:748041796
2234 2234 c, t dbSNP:554265920
2235 2235 a, g, t dbSNP:140859029
2274 2274 c, t dbSNP:574929958
2339 2339 a, g dbSNP:781151190
2392 2392 a, c dbSNP:558247260
2400 2400 c, g dbSNP:538972905
2413 2413 a, g dbSNP:754748547
2435 2435 a, g dbSNP:566647405
2498 2498 c, t dbSNP:553194297
2514 2514 c, t dbSNP:536451692
2515 2515 a, g dbSNP:756158556
2529 2529 c, t dbSNP:567437078
2537 2537 c, t dbSNP:150996598
2552 2552 a, g dbSNP:535570733
2566 2566 a, c dbSNP:144087815
2592 2592 c, g dbSNP:571694665
2638 2638 a, g dbSNP:551480403
2645 2645 c, t dbSNP:376736452
2652 2652 a, g dbSNP:140091371
2709 2709 c, g dbSNP:758566029
2773 2773 a, g dbSNP:543279134
2779 2779 c, t dbSNP:563030489
2780 2780 a, g dbSNP:752898583
2792 2792 c, t dbSNP:529461844
2821 2821 a, g dbSNP:146097557
2828 2828 c, g dbSNP:543931886
2876 2876 c, t dbSNP:765409585
2887 2887 c, t dbSNP:574993994
2906 2906 a, g dbSNP:192230011
2916 2916 a, g dbSNP:544690784
2961 2961 a, g dbSNP:544899496
2965 2965 c, t dbSNP:754205490
2981 2981 c, t dbSNP:766842560
2982 2982 c, t dbSNP:761240403
2994 2994 c, g dbSNP:144254019
3006 3006 a, g dbSNP:148510381
3019 3019 a, g dbSNP:536513335
3036 3036 a, g dbSNP:59898968
3107 3107 a, g dbSNP:144653185
3118 3118 a, g dbSNP:77962777
3120 3120 a, g dbSNP:761255848
3128 3128 a, g dbSNP:149443201
3130 3130 a, g dbSNP:758580035
3132 3132 a, g dbSNP:113804849
3134 3134 a, g dbSNP:534730477
3140 3140 a, g dbSNP:566031561
3142 3142 a, g dbSNP:549301983
3145 3145 -, ca dbSNP:142673259
3152 3152 a, g dbSNP:115367412
3155 3155 c, g dbSNP:188895029
3168 3168 a, g dbSNP:549955880
3169 3169 c, t dbSNP:533312554
3191 3191 a, g dbSNP:368226429
3229 3229 c, t dbSNP:116607284
3230 3230 a, g dbSNP:10747605
3245 3245 c, t dbSNP:762775464
3246 3246 a, g dbSNP:572763454
3263 3263 a, t dbSNP:559282979
3276 3276 a, g dbSNP:542970097
3288 3288 c, t dbSNP:371610272
3332 3332 g, t dbSNP:117061312
3342 3342 c, t dbSNP:775212798
3370 3370 c, t dbSNP:111665877
3396 3396 c, t dbSNP:754373382
3414 3414 a, g dbSNP:745742134
3418 3418 a, c dbSNP:138938883
3427 3427 c, t dbSNP:185869567
3441 3441 a, g dbSNP:150676262
3455 3455 c, t dbSNP:193099734
3517 3517 -, cc dbSNP:200488247
3528 3528 -, a dbSNP:35515176
3549 3549 g, t dbSNP:548962841
3560 3560 c, t dbSNP:143971014
3591 3591 g, t dbSNP:570024767
3611 3611 a, g dbSNP:550016955
3677 3677 -, cg dbSNP:367854102
3677 3677 a, c, g dbSNP:775854501
3678 3678 g, t dbSNP:10876151
3704 3704 c, t dbSNP:571233922
3705 3705 a, g dbSNP:76213841
3740 3740 a, g dbSNP:551218905
3742 3742 a, g dbSNP:528165153
3760 3760 c, g dbSNP:762613972
3762 3762 a, g dbSNP:772886922
3813 3813 g, t dbSNP:559129677
3820 3820 a, g dbSNP:542634796
3829 3829 a, g dbSNP:769267576
3837 3837 -, g dbSNP:375451951
3853 3853 a, g dbSNP:11169754
3872 3872 a, g dbSNP:146961609
3897 3897 a, g dbSNP:781096058
3908 3908 c, g dbSNP:780458421
4022 4022 a, g dbSNP:188891651
4029 4029 g, t dbSNP:78392974
4034 4034 a, g dbSNP:557913772
4049 4049 a, g dbSNP:376294231
4050 4050 a, c dbSNP:756488885
4067 4067 g, t dbSNP:534854775
4104 4104 c, t dbSNP:572493950
4162 4162 c, t dbSNP:112726096
4173 4173 a, g dbSNP:11169753
4217 4217 a, g dbSNP:116037696
4234 4234 a, g dbSNP:115353814
4250 4250 c, t dbSNP:761361211
4276 4276 a, g dbSNP:556452251
4320 4320 c, t dbSNP:79809537
4354 4354 a, c dbSNP:570982718
4376 4376 a, g dbSNP:547965307
4404 4404 a, c, g dbSNP:376937595
4411 4411 c, t dbSNP:11738
4441 4441 a, g dbSNP:565789244
4442 4442 a, g dbSNP:560565419
4468 4468 a, c dbSNP:762569883
4470 4470 a, g dbSNP:1607
4471 4471 c, t dbSNP:76928355
4472 4472 a, g dbSNP:563258828
4477 4477 c, t dbSNP:769645823
4532 4532 a, g dbSNP:543380643
4563 4563 g, t dbSNP:543609234
4571 4571 a, c dbSNP:533254041
4589 4589 c, t dbSNP:564167689
4600 4600 a, c dbSNP:541232669
4609 4609 c, t dbSNP:147827177
4620 4620 -, a dbSNP:764837514
4644 4644 c, t dbSNP:776662352
4656 4656 a, g dbSNP:770824188
4686 4686 a, t dbSNP:141188998
4691 4691 -, t dbSNP:532539335

Target ORF information:

RefSeq Version NM_002702
Organism Homo sapiens (human)
Definition Homo sapiens POU class 6 homeobox 1 (POU6F1), transcript variant 1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
NM_002702

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
ATGCCAGGGA TCAGCAGTCA GATCCTCACC AATGCTCAGG GACAGGTTAT TGGAACCCTT 
CCATGGGTAG TGAACTCAGC TAGTGTGGCG GCCCCAGCAC CAGCCCAAAG CCTGCAGGTC
CAGGCCGTGA CCCCCCAGCT GTTGTTGAAC GCCCAGGGCC AGGTGATTGC GACCCTGGCT
AGCAGCCCCC TGCCTCCACC TGTGGCTGTC CGGAAGCCAA GCACACCTGA GTCCCCTGCT
AAGAGTGAGG TGCAGCCCAT CCAGCCCACA CCAACCGTGC CCCAGCCTGC TGTGGTCATT
GCCAGCCCAG CTCCAGCCGC CAAGCCATCT GCCTCTGCTC CTATCCCAAT TACCTGCTCA
GAGACCCCCA CCGTCAGCCA GTTGGTGTCC AAGCCACATA CTCCAAGTCT GGATGAGGAT
GGGATCAACT TAGAAGAGAT CCGGGAGTTT GCCAAGAACT TTAAGATCCG GCGGCTCTCG
CTGGGCCTTA CACAGACCCA GGTGGGTCAG GCTCTGACTG CAACGGAAGG TCCAGCCTAC
AGCCAGTCAG CCATCTGCCG GTTCGAGAAG CTAGACATCA CACCCAAGAG TGCCCAGAAG
CTAAAGCCGG TGCTGGAAAA GTGGCTAAAC GAAGCTGAAC TGCGGAACCA GGAAGGCCAG
CAGAACCTGA TGGAGTTTGT GGGAGGCGAG CCCTCCAAGA AACGCAAACG CCGCACCTCC
TTCACCCCCC AGGCCATAGA GGCTCTCAAT GCCTATTTTG AGAAGAACCC ACTGCCCACA
GGCCAGGAGA TCACTGAAAT TGCTAAGGAG CTCAACTACG ACCGTGAGGT AGTGCGGGTC
TGGTTCTGCA ATCGGCGCCA GACGCTCAAG AACACCAGCA AGCTGAACGT CTTTCAGATC
CCTTAG

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.