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Cd3e CD3 antigen, epsilon polypeptide [Mus musculus (house mouse)]

Gene Symbol Cd3e
Entrez Gene ID 12501
Full Name CD3 antigen, epsilon polypeptide
Synonyms AI504783, CD3, CD3epsilon, T3e
General protein information
Preferred Names
T-cell surface glycoprotein CD3 epsilon chain
Names
T-cell surface glycoprotein CD3 epsilon chain
T-cell surface antigen T3/Leu-4 epsilon chain
Gene Type protein-coding
Organism Mus musculus (house mouse)
Genome

9

9 A5.2|9 24.84 cM

Summary lac of sum
Disorder MIM:

Disorder Html:





Alleles of this type are documented at Mouse Genome Informatics  (MGI)

The following Cd3e gene sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Cd3e gene which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

CloneID RefSeq Accession Definition **Vector *Turnaround time Price Select
OMu20096 XM_006509966 PREDICTED: Mus musculus CD3 antigen, epsilon polypeptide (Cd3e), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 5-7 $99
OMu20096 NM_007648 Mus musculus CD3 antigen, epsilon polypeptide (Cd3e), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 5-7 $99

*Business Day
**You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.


CloneID OMu20096
Accession Version XM_006509966.2
Sequence Information ORF Nucleotide Sequence (Length: 570bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product T-cell surface glycoprotein CD3 epsilon chain isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039472.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced gi:568958758. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
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541
ATGCGGTGGA ACACTTTCTG GGGCATCCTG TGCCTCAGCC TCCTAGCTGT TGGCACTTGC 
CAGGACGATG CCGAGAACAT TGAATACAAA GTCTCCATCT CAGGAACCAG TGTAGAGTTG
ACGTGCCCTC TAGACAGTGA CGAGAACTTA AAATGGGAAA AAAATGGCCA AGAGCTGCCT
CAGAAGCATG ATAAGCACCT GGTGCTCCAG GATTTCTCGG AAGTCGAGGA CAGTGGCTAC
TACGTCTGCT ACACACCAGC CTCAAATAAA AACACGTACT TGTACCTGAA AGCTCGAGTG
TGTGAGTACT GTGTGGAGGT GGACCTGACA GCAGTAGCCA TAATCATCAT TGTTGACATC
TGTATCACTC TGGGCTTGCT GATGGTCATT TATTACTGGA GCAAGAATAG GAAGGCCAAG
GCCAAGCCTG TGACCCGAGG AACCGGTGCT GGTAGCAGGC CCAGAGGGCA AAACAAGGAG
CGGCCACCAC CTGTTCCCAA CCCAGACTAT GAGCCCATCC GCAAAGGCCA GCGGGACCTG
TATTCTGGCC TGAATCAGAG AGCAGTCTGA
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeqXP_006510029.1
CDS148..717
Misc Feature(1)232..444(+)
Misc Feature(2)247..420(+)
Misc Feature(3)646..708(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_006509966
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus CD3 antigen, epsilon polypeptide (Cd3e), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
XM_006509966

ORF Insert Sequence:

1
61
121
181
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481
541
ATGCGGTGGA ACACTTTCTG GGGCATCCTG TGCCTCAGCC TCCTAGCTGT TGGCACTTGC 
CAGGACGATG CCGAGAACAT TGAATACAAA GTCTCCATCT CAGGAACCAG TGTAGAGTTG
ACGTGCCCTC TAGACAGTGA CGAGAACTTA AAATGGGAAA AAAATGGCCA AGAGCTGCCT
CAGAAGCATG ATAAGCACCT GGTGCTCCAG GATTTCTCGG AAGTCGAGGA CAGTGGCTAC
TACGTCTGCT ACACACCAGC CTCAAATAAA AACACGTACT TGTACCTGAA AGCTCGAGTG
TGTGAGTACT GTGTGGAGGT GGACCTGACA GCAGTAGCCA TAATCATCAT TGTTGACATC
TGTATCACTC TGGGCTTGCT GATGGTCATT TATTACTGGA GCAAGAATAG GAAGGCCAAG
GCCAAGCCTG TGACCCGAGG AACCGGTGCT GGTAGCAGGC CCAGAGGGCA AAACAAGGAG
CGGCCACCAC CTGTTCCCAA CCCAGACTAT GAGCCCATCC GCAAAGGCCA GCGGGACCTG
TATTCTGGCC TGAATCAGAG AGCAGTCTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu20096
Accession Version NM_007648.4
Sequence Information ORF Nucleotide Sequence (Length: 570bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 15-FEB-2015
Organism Mus musculus (house mouse)
Product T-cell surface glycoprotein CD3 epsilon chain precursor
Comment PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AC122305.4. On Oct 19, 2007 this sequence version replaced gi:145966772. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: J02990.1, AI323257.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849383 [ECO:0000348] ##Evidence-Data-END##

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541
ATGCGGTGGA ACACTTTCTG GGGCATCCTG TGCCTCAGCC TCCTAGCTGT TGGCACTTGC 
CAGGACGATG CCGAGAACAT TGAATACAAA GTCTCCATCT CAGGAACCAG TGTAGAGTTG
ACGTGCCCTC TAGACAGTGA CGAGAACTTA AAATGGGAAA AAAATGGCCA AGAGCTGCCT
CAGAAGCATG ATAAGCACCT GGTGCTCCAG GATTTCTCGG AAGTCGAGGA CAGTGGCTAC
TACGTCTGCT ACACACCAGC CTCAAATAAA AACACGTACT TGTACCTGAA AGCTCGAGTG
TGTGAGTACT GTGTGGAGGT GGACCTGACA GCAGTAGCCA TAATCATCAT TGTTGACATC
TGTATCACTC TGGGCTTGCT GATGGTCATT TATTACTGGA GCAAGAATAG GAAGGCCAAG
GCCAAGCCTG TGACCCGAGG AACCGGTGCT GGTAGCAGGC CCAGAGGGCA AAACAAGGAG
CGGCCACCAC CTGTTCCCAA CCCAGACTAT GAGCCCATCC GCAAAGGCCA GCGGGACCTG
TATTCTGGCC TGAATCAGAG AGCAGTCTGA
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeqNP_031674.1
CDS79..648
Misc Feature(1)58..60(+)
Misc Feature(2)163..375(+)
Misc Feature(3)178..351(+)
Misc Feature(4)403..480(+)
Misc Feature(5)577..639(+)
Exon (1)1..25
Gene:Cd3e
Gene Synonym:
Exon (2)26..127
Gene:Cd3e
Gene Synonym:
Exon (3)128..145
Gene:Cd3e
Gene Synonym:
Exon (4)146..160
Gene:Cd3e
Gene Synonym:
Exon (5)161..376
Gene:Cd3e
Gene Synonym:
Exon (6)377..544
Gene:Cd3e
Gene Synonym:
Exon (7)545..591
Gene:Cd3e
Gene Synonym:
Exon (8)592..1436
Gene:Cd3e
Gene Synonym:
Translation
Position Chain Variation Link
3 3 g, t dbSNP:49634626
66 66 a, g dbSNP:250132920
78 78 a, g dbSNP:228592095
109 109 g, t dbSNP:264619040
126 126 a, t dbSNP:250641284
137 137 a, g dbSNP:254643807
138 138 c, t dbSNP:234951660
148 148 c, g dbSNP:233314779
154 154 a, g dbSNP:215289690
158 158 c, t dbSNP:262353732
165 165 c, t dbSNP:49488483
201 201 a, g dbSNP:30026286
211 211 a, g dbSNP:214472889
243 243 c, t dbSNP:250279964
253 253 c, t dbSNP:228696290
334 334 a, c dbSNP:255749631
345 345 g, t dbSNP:46391226
385 385 g, t dbSNP:265616857
495 495 c, t dbSNP:244924935
651 651 a, g dbSNP:232248497
675 675 a, g dbSNP:265508223
684 684 c, t dbSNP:244094076
760 760 c, t dbSNP:29690750
761 761 a, g dbSNP:256812949
770 770 a, g dbSNP:237411120
778 778 a, g dbSNP:223583778
795 795 c, t dbSNP:254579798
797 797 c, t dbSNP:241545214
815 815 a, g dbSNP:224451518
850 850 a, t dbSNP:262685852
851 851 c, t dbSNP:236512797
852 852 a, c dbSNP:213826347
853 853 -, c dbSNP:257128701
853 853 a, c dbSNP:248603162
898 898 -, t dbSNP:266256185
903 903 c, t dbSNP:30437251
1016 1016 a, t dbSNP:229633677
1052 1052 -, t dbSNP:257302405
1080 1080 a, t dbSNP:232507616
1081 1081 -, aaa dbSNP:249986054
1082 1082 -, tttt dbSNP:212852036
1132 1132 -, ac dbSNP:247071536
1148 1148 c, t dbSNP:30273586
1158 1158 c, t dbSNP:29878239
1167 1167 g, t dbSNP:232990215
1168 1168 a, g dbSNP:215474272
1185 1185 c, t dbSNP:256268779
1192 1192 c, t dbSNP:229856415
1216 1216 -, ttttttttt dbSNP:221506635
1217 1217 g, t dbSNP:30332894
1220 1220 -, t dbSNP:230665807
1221 1221 -, ttt dbSNP:387621573
1221 1221 g, t dbSNP:256868307
1224 1224 -, g dbSNP:222834396
1233 1233 -, ta dbSNP:261508679
1233 1233 -, t, ttt dbSNP:387684221
1234 1234 a, t dbSNP:30181964
1359 1359 c, t dbSNP:47809995
1393 1393 c, t dbSNP:229280132
1399 1399 c, t dbSNP:260805101

Target ORF information:

RefSeq Version NM_007648
Organism Mus musculus (house mouse)
Definition Mus musculus CD3 antigen, epsilon polypeptide (Cd3e), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
NM_007648

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
ATGCGGTGGA ACACTTTCTG GGGCATCCTG TGCCTCAGCC TCCTAGCTGT TGGCACTTGC 
CAGGACGATG CCGAGAACAT TGAATACAAA GTCTCCATCT CAGGAACCAG TGTAGAGTTG
ACGTGCCCTC TAGACAGTGA CGAGAACTTA AAATGGGAAA AAAATGGCCA AGAGCTGCCT
CAGAAGCATG ATAAGCACCT GGTGCTCCAG GATTTCTCGG AAGTCGAGGA CAGTGGCTAC
TACGTCTGCT ACACACCAGC CTCAAATAAA AACACGTACT TGTACCTGAA AGCTCGAGTG
TGTGAGTACT GTGTGGAGGT GGACCTGACA GCAGTAGCCA TAATCATCAT TGTTGACATC
TGTATCACTC TGGGCTTGCT GATGGTCATT TATTACTGGA GCAAGAATAG GAAGGCCAAG
GCCAAGCCTG TGACCCGAGG AACCGGTGCT GGTAGCAGGC CCAGAGGGCA AAACAAGGAG
CGGCCACCAC CTGTTCCCAA CCCAGACTAT GAGCCCATCC GCAAAGGCCA GCGGGACCTG
TATTCTGGCC TGAATCAGAG AGCAGTCTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.