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Ppara peroxisome proliferator activated receptor alpha [Mus musculus (house mouse)]

Gene Symbol Ppara
Entrez Gene ID 19013
Full Name peroxisome proliferator activated receptor alpha
Synonyms 4933429D07Rik, AW742785, Nr1c1, PPAR-alpha, PPARalpha, Ppar
General protein information
Preferred Names
peroxisome proliferator-activated receptor alpha
Names
peroxisome proliferator-activated receptor alpha
nuclear receptor subfamily 1 group C member 1
Gene Type protein-coding
Organism Mus musculus (house mouse)
Genome

15

15 E2|15 40.42 cM

Summary lac of sum
Disorder MIM:

Disorder Html:
Alleles of this type are documented at Mouse Genome Informatics  (MGI)
CloneID RefSeq Accession Definition **Vector *Turnaround time Price
OMu22504 XM_011245516 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 XM_006520619 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 XM_006520620 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X3, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 XM_011245517 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X4, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 XM_011245518 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X5, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 XM_011245519 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X6, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 XM_006520621 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X7, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 XM_006520622 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X8, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 XM_006520623 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X9, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu51072 XM_006520624 PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X10, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 NM_011144 Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant 1, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00
OMu22504 NM_001113418 Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant 2, mRNA. pcDNA3.1-C-(k)DYK Not in stock 7-9 Starting from $99.00

*Business Day
**You may select a custom vector to replace pcDNA3.1-C-(k)DYK after clone is added to cart.



CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_011243818.1
CDS416..1822
Misc Feature(1)716..967(+)
Misc Feature(2)719..883(+)
Misc Feature(3)743..946(+)
Misc Feature(4)857..871(+)
Misc Feature(5)1016..1816(+)
Misc Feature(6)1238..1735(+)
Misc Feature(7)1268..1345(+)
Misc Feature(8)1505..1741(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_011245516
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_011245516

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_006520682.1
CDS213..1619
Misc Feature(1)513..764(+)
Misc Feature(2)516..680(+)
Misc Feature(3)540..743(+)
Misc Feature(4)654..668(+)
Misc Feature(5)813..1613(+)
Misc Feature(6)1035..1532(+)
Misc Feature(7)1065..1142(+)
Misc Feature(8)1302..1538(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_006520619
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_006520619

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced gi:568991728. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_006520683.1
CDS195..1601
Misc Feature(1)495..746(+)
Misc Feature(2)498..662(+)
Misc Feature(3)522..725(+)
Misc Feature(4)636..650(+)
Misc Feature(5)795..1595(+)
Misc Feature(6)1017..1514(+)
Misc Feature(7)1047..1124(+)
Misc Feature(8)1284..1520(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_006520620
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X3, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_006520620

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_011243819.1
CDS371..1777
Misc Feature(1)671..922(+)
Misc Feature(2)674..838(+)
Misc Feature(3)698..901(+)
Misc Feature(4)812..826(+)
Misc Feature(5)971..1771(+)
Misc Feature(6)1193..1690(+)
Misc Feature(7)1223..1300(+)
Misc Feature(8)1460..1696(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_011245517
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X4, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_011245517

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_011243820.1
CDS319..1725
Misc Feature(1)619..870(+)
Misc Feature(2)622..786(+)
Misc Feature(3)646..849(+)
Misc Feature(4)760..774(+)
Misc Feature(5)919..1719(+)
Misc Feature(6)1141..1638(+)
Misc Feature(7)1171..1248(+)
Misc Feature(8)1408..1644(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_011245518
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X5, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_011245518

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_011243821.1
CDS318..1724
Misc Feature(1)618..869(+)
Misc Feature(2)621..785(+)
Misc Feature(3)645..848(+)
Misc Feature(4)759..773(+)
Misc Feature(5)918..1718(+)
Misc Feature(6)1140..1637(+)
Misc Feature(7)1170..1247(+)
Misc Feature(8)1407..1643(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_011245519
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X6, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_011245519

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced gi:568991730. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_006520684.1
CDS285..1691
Misc Feature(1)585..836(+)
Misc Feature(2)588..752(+)
Misc Feature(3)612..815(+)
Misc Feature(4)726..740(+)
Misc Feature(5)885..1685(+)
Misc Feature(6)1107..1604(+)
Misc Feature(7)1137..1214(+)
Misc Feature(8)1374..1610(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_006520621
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X7, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_006520621

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced gi:568991732. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_006520685.1
CDS1145..2551
Misc Feature(1)1445..1696(+)
Misc Feature(2)1448..1612(+)
Misc Feature(3)1472..1675(+)
Misc Feature(4)1586..1600(+)
Misc Feature(5)1745..2545(+)
Misc Feature(6)1967..2464(+)
Misc Feature(7)1997..2074(+)
Misc Feature(8)2234..2470(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_006520622
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X8, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_006520622

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced gi:568991734. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_006520686.1
CDS818..2224
Misc Feature(1)1118..1369(+)
Misc Feature(2)1121..1285(+)
Misc Feature(3)1145..1348(+)
Misc Feature(4)1259..1273(+)
Misc Feature(5)1418..2218(+)
Misc Feature(6)1640..2137(+)
Misc Feature(7)1670..1747(+)
Misc Feature(8)1907..2143(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_006520623
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X9, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_006520623

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu51072D
Sequence Information ORF Nucleotide Sequence (Length: 1404bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha isoform X2
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_039621.8) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced gi:568991736. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGC TCCTTCAAAA AATGGTGGAC CTTCGGCAGC TGGTCACGGA
GCATGCGCAG CTCGTACAGG TCATCAAGAA GACCGAGTCC GACGCAGCGC TGCACCCACT
GTTGCAAGAG ATCTACAGAG ACATGTACTG ATCTTTCCTG AGATGGCAGG CCGTTGCCAC
TGTTCAGGGA CCTCCGAGGC CTGCGGCCCC ATACAGGAGA GCAGGGATTT GCACAGAGGG
CCTCCCTCCT ACGCTTGGGG ATGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqXP_006520687.1
CDS416..1819
Misc Feature(1)716..967(+)
Misc Feature(2)719..883(+)
Misc Feature(3)743..946(+)
Misc Feature(4)857..871(+)
Misc Feature(5)1016..>1573(+)
Misc Feature(6)1241..1489(+)
Misc Feature(7)1268..1345(+)
Translation
Position Chain Variation Link

Target ORF information:

RefSeq Version XM_006520624
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant X10, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
XM_006520624

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGC TCCTTCAAAA AATGGTGGAC CTTCGGCAGC TGGTCACGGA
GCATGCGCAG CTCGTACAGG TCATCAAGAA GACCGAGTCC GACGCAGCGC TGCACCCACT
GTTGCAAGAG ATCTACAGAG ACATGTACTG ATCTTTCCTG AGATGGCAGG CCGTTGCCAC
TGTTCAGGGA CCTCCGAGGC CTGCGGCCCC ATACAGGAGA GCAGGGATTT GCACAGAGGG
CCTCCCTCCT ACGCTTGGGG ATGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 15-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha
Comment VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK035676.1, AC117784.13 and AI118064.1. On Jan 12, 2008 this sequence version replaced gi:158508624. Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK035676.1, BC016892.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqNP_035274.2
CDS446..1852
Misc Feature(1)359..361(+)
Misc Feature(2)746..997(+)
Misc Feature(3)749..913(+)
Misc Feature(4)773..976(+)
Misc Feature(5)887..901(+)
Misc Feature(6)1046..1846(+)
Misc Feature(7)1268..1765(+)
Misc Feature(8)1283..1849(+)
Misc Feature(9)1298..1375(+)
Misc Feature(10)1355..1744(+)
Misc Feature(11)1535..1771(+)
Misc Feature(12)1742..1744(+)
Exon (1)1..321
Gene:Ppara
Gene Synonym:
Exon (2)322..406
Gene:Ppara
Gene Synonym:
Exon (3)407..653
Gene:Ppara
Gene Synonym:
Exon (4)654..814
Gene:Ppara
Gene Synonym:
Exon (5)815..953
Gene:Ppara
Gene Synonym:
Exon (6)954..1156
Gene:Ppara
Gene Synonym:
Exon (7)1157..1604
Gene:Ppara
Gene Synonym:
Exon (8)1605..7445
Gene:Ppara
Gene Synonym:
Translation
Position Chain Variation Link
55 55 c, g dbSNP:16820280
68 68 a, g dbSNP:16820281
180 180 a, g dbSNP:16820282
225 225 c, t dbSNP:16820283
274 274 a, t dbSNP:16820284
303 303 c, t dbSNP:16820285
646 646 c, t dbSNP:245563912
682 682 c, t dbSNP:16820326
697 697 c, t dbSNP:16820327
706 706 c, t dbSNP:257070595
787 787 c, t dbSNP:231055896
853 853 a, g dbSNP:16820328
1126 1126 a, g dbSNP:16783499
1132 1132 a, g dbSNP:16820346
1144 1144 a, g dbSNP:16820345
1285 1285 c, t dbSNP:214744712
1429 1429 c, t dbSNP:8238202
1477 1477 a, t dbSNP:8238203
1495 1495 g, t dbSNP:16820368
1696 1696 a, g dbSNP:39949675
1867 1867 a, g dbSNP:16820389
1874 1874 a, g dbSNP:16820390
1877 1877 a, g dbSNP:16820391
1906 1906 a, g dbSNP:16820392
1914 1914 a, g dbSNP:247385360
1978 1978 a, g dbSNP:265710395
1996 1996 c, t dbSNP:16820393
2004 2004 -, ctta dbSNP:215474736
2008 2008 -, a dbSNP:16820394
2041 2041 c, g dbSNP:16820407
2059 2059 a, g dbSNP:36682881
2089 2089 c, t dbSNP:16820408
2147 2147 c, g dbSNP:37455177
2163 2163 a, g dbSNP:16820409
2186 2186 a, g dbSNP:16820410
2199 2199 g, t dbSNP:16820411
2315 2315 a, c dbSNP:16820412
2327 2327 -, aaaaaa dbSNP:221784299
2328 2328 -, aaaaa dbSNP:236323211
2356 2356 a, g dbSNP:16820413
2413 2413 a, g dbSNP:16820414
2416 2416 a, t dbSNP:16820415
2461 2461 c, t dbSNP:16820416
2469 2469 g, t dbSNP:16820417
2526 2526 a, g dbSNP:16820418
2548 2548 c, t dbSNP:16820419
2591 2591 a, g dbSNP:37429188
2621 2621 c, t dbSNP:16820420
2627 2627 c, t dbSNP:16820421
2652 2652 g, t dbSNP:16820422
2654 2654 g, t dbSNP:16820423
2655 2655 a, g dbSNP:37420502
2771 2771 -, aa dbSNP:218297109
2772 2772 -, aaac dbSNP:238946748
2783 2783 -, caaa dbSNP:257042663
2784 2784 -, a dbSNP:244195349
2785 2785 -, aac dbSNP:264102392
2807 2807 a, t dbSNP:243157522
2812 2812 c, t dbSNP:254243600
2822 2822 a, c dbSNP:217599855
2824 2824 -, c dbSNP:249223135
2824 2824 a, c dbSNP:238297249
2831 2831 -, ct dbSNP:387901922
2884 2884 a, g dbSNP:38074116
2903 2903 a, g dbSNP:32336557
2971 2971 g, t dbSNP:230371936
2972 2972 a, g dbSNP:249395282
2976 2976 -, ttg dbSNP:232848767
2984 2984 a, g dbSNP:226257226
2993 2993 a, g dbSNP:249755373
3093 3093 g, t dbSNP:263433262
3114 3114 c, t dbSNP:224157599
3115 3115 a, g dbSNP:238380754
3141 3141 a, g dbSNP:32039308
3170 3170 c, t dbSNP:224241434
3212 3212 c, t dbSNP:243200159
3247 3247 -, ac dbSNP:225928714
3263 3263 a, g dbSNP:254060562
3268 3268 c, t dbSNP:6253977
3305 3305 c, t dbSNP:6254040
3322 3322 a, g dbSNP:216836080
3325 3325 a, c dbSNP:232559733
3398 3398 a, g dbSNP:246097882
3490 3490 a, g dbSNP:33858527
3534 3534 a, g dbSNP:6255204
3543 3543 a, c dbSNP:6255595
3544 3544 -, t dbSNP:247357437
3556 3556 c, t dbSNP:218810414
3605 3605 c, t dbSNP:31708044
3607 3607 c, t dbSNP:213982940
3608 3608 c, t dbSNP:263158078
3651 3651 c, t dbSNP:223927046
3656 3656 a, g dbSNP:238322333
3682 3682 c, t dbSNP:249680704
3695 3695 c, g dbSNP:36473594
3699 3699 a, c dbSNP:218508952
3711 3711 c, t dbSNP:235759827
3733 3733 a, g dbSNP:264386942
3735 3735 a, t dbSNP:32128763
3742 3742 c, t dbSNP:247701299
3804 3804 -, gct dbSNP:233481776
3846 3846 a, c dbSNP:32155299
3875 3875 c, t dbSNP:32119154
3880 3880 -, cagt dbSNP:248473048
3916 3916 a, g dbSNP:31737725
3990 3990 c, t dbSNP:214002345
4018 4018 c, t dbSNP:225378165
4019 4019 a, g dbSNP:243779690
4051 4051 a, g dbSNP:219662133
4108 4108 c, t dbSNP:241791171
4156 4156 -, ct dbSNP:237597756
4245 4245 c, g dbSNP:259240528
4246 4246 c, t dbSNP:46037809
4248 4248 a, c dbSNP:231850879
4250 4250 a, g dbSNP:249617143
4253 4253 c, g dbSNP:47951447
4257 4257 g, t dbSNP:235874985
4259 4259 a, t dbSNP:264138192
4260 4260 a, g dbSNP:47407937
4311 4311 -, c dbSNP:256817825
4318 4318 c, g dbSNP:38386845
4432 4432 a, g dbSNP:37106663
4592 4592 c, t dbSNP:31898267
4615 4615 a, g dbSNP:32320740
4637 4637 c, t dbSNP:239787923
4638 4638 a, g dbSNP:257657874
4652 4652 c, t dbSNP:225319778
4709 4709 c, t dbSNP:32350455
4723 4723 -, ctt dbSNP:245545073
4778 4778 c, t dbSNP:38419961
4821 4821 g, t dbSNP:31846037
4825 4825 a, g dbSNP:31724299
4870 4870 c, t dbSNP:257919293
4879 4879 c, t dbSNP:215415203
4897 4897 a, g dbSNP:231971468
4922 4922 c, t dbSNP:36474893
4923 4923 a, g dbSNP:36404607
4925 4925 g, t dbSNP:212599472
4942 4942 c, t dbSNP:229954135
4951 4951 a, g dbSNP:32303278
5031 5031 g, t dbSNP:31998520
5038 5038 a, g dbSNP:51131119
5039 5039 a, g dbSNP:264426262
5040 5040 a, g dbSNP:49183024
5071 5071 c, t dbSNP:51983802
5090 5090 c, t dbSNP:46872855
5101 5101 c, t dbSNP:46974543
5112 5112 -, ggggc dbSNP:228671504
5118 5118 -, gggc dbSNP:235448197
5121 5121 c, g dbSNP:218949394
5129 5129 g, t dbSNP:244445855
5149 5149 c, t dbSNP:264612251
5162 5162 -, a dbSNP:241300196
5235 5235 a, g dbSNP:47516076
5251 5251 a, c dbSNP:253423808
5288 5288 a, g dbSNP:257586090
5309 5309 c, t dbSNP:225874417
5336 5336 c, t dbSNP:32135725
5337 5337 a, g dbSNP:212534126
5375 5375 c, t dbSNP:31763260
5388 5388 a, c dbSNP:260092661
5443 5443 c, g dbSNP:217968637
5456 5456 a, g dbSNP:37148838
5460 5460 a, g dbSNP:32310101
5462 5462 a, g dbSNP:220189144
5466 5466 a, g dbSNP:32377774
5526 5526 a, g dbSNP:37813356
5551 5551 a, g dbSNP:251387502
5590 5590 g, t dbSNP:218892673
5611 5611 a, g dbSNP:241294714
5641 5641 -, ggg dbSNP:231672627
5642 5642 -, gggggggg dbSNP:230867229
5646 5646 a, g dbSNP:266173319
5649 5649 -, ggggg dbSNP:387196694
5650 5650 g, t dbSNP:32035672
5650 5650 -, t dbSNP:222635263
5734 5734 c, t dbSNP:36310984
5776 5776 a, g dbSNP:32083909
5781 5781 a, g dbSNP:226381495
5814 5814 c, t dbSNP:37968628
5845 5845 a, g dbSNP:254442862
5890 5890 -, ag dbSNP:251063029
5905 5905 c, t dbSNP:227924896
5909 5909 c, t dbSNP:36417329
5961 5961 a, g dbSNP:217753278
5970 5970 a, g dbSNP:232327198
5985 5985 -, ggtccca dbSNP:246606744
5986 5986 a, g dbSNP:246464558
6183 6183 -, aaaa dbSNP:239787253
6199 6199 -, aaaaa dbSNP:387442304
6203 6203 a, g dbSNP:32163852
6258 6258 a, g dbSNP:31718912
6316 6316 a, g dbSNP:251336055
6337 6337 a, t dbSNP:213006088
6346 6346 c, t dbSNP:236524981
6363 6363 -, c dbSNP:253733993
6364 6364 -, a dbSNP:230513422
6366 6366 -, a dbSNP:386851010
6443 6443 a, c dbSNP:260932215
6449 6449 a, g dbSNP:226302337
6459 6459 a, g dbSNP:246843135
6462 6462 a, g dbSNP:49863138
6471 6471 g, t dbSNP:220240551
6591 6591 c, t dbSNP:32501171
6680 6680 c, t dbSNP:32090859
6697 6697 a, t dbSNP:32541261
6705 6705 a, g dbSNP:32188799
6717 6717 -, tcagtgtttccgtcaggg dbSNP:248348124
6743 6743 c, t dbSNP:38653448
6854 6854 c, g dbSNP:263857724
6879 6879 a, c dbSNP:13466761
7005 7005 c, t dbSNP:36545450
7073 7073 a, g dbSNP:246399800
7093 7093 a, g dbSNP:214374164
7156 7156 a, g dbSNP:31717376
7253 7253 -, ta dbSNP:234559250
7254 7254 -, aa dbSNP:238798044
7265 7265 -, aa dbSNP:387299579
7275 7275 a, g dbSNP:244151542
7310 7310 c, t dbSNP:36292757
7332 7332 a, g dbSNP:37264522
7417 7417 -, aa dbSNP:244686395

Target ORF information:

RefSeq Version NM_011144
Organism Mus musculus (house mouse)
Definition Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant 1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
NM_011144

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.


CloneID OMu22504D
Sequence Information ORF Nucleotide Sequence (Length: 1407bp)
Protein sequence
SNP
Vector pcDNA3.1-C-(k)DYK or customized vector
Clone information Clone Map
Tag on pcDNA3.1-C-(k)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Structure linear
Update Date 15-FEB-2015
Organism Mus musculus (house mouse)
Product peroxisome proliferator-activated receptor alpha
Comment VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK081709.1, AC117784.13 and AI118064.1. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK081709.1, AK149460.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA
The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.
RefSeqNP_001106889.1
CDS208..1614
Misc Feature(1)121..123(+)
Misc Feature(2)508..759(+)
Misc Feature(3)511..675(+)
Misc Feature(4)535..738(+)
Misc Feature(5)649..663(+)
Misc Feature(6)808..1608(+)
Misc Feature(7)1030..1527(+)
Misc Feature(8)1045..1611(+)
Misc Feature(9)1060..1137(+)
Misc Feature(10)1117..1506(+)
Misc Feature(11)1297..1533(+)
Misc Feature(12)1504..1506(+)
Exon (1)1..83
Gene:Ppara
Gene Synonym:
Exon (2)84..168
Gene:Ppara
Gene Synonym:
Exon (3)169..415
Gene:Ppara
Gene Synonym:
Exon (4)416..576
Gene:Ppara
Gene Synonym:
Exon (5)577..715
Gene:Ppara
Gene Synonym:
Exon (6)716..918
Gene:Ppara
Gene Synonym:
Exon (7)919..1366
Gene:Ppara
Gene Synonym:
Exon (8)1367..7207
Gene:Ppara
Gene Synonym:
Translation
Position Chain Variation Link
15 15 a, g dbSNP:224956977
17 17 a, g dbSNP:243465540
408 408 c, t dbSNP:245563912
444 444 c, t dbSNP:16820326
459 459 c, t dbSNP:16820327
468 468 c, t dbSNP:257070595
549 549 c, t dbSNP:231055896
615 615 a, g dbSNP:16820328
888 888 a, g dbSNP:16783499
894 894 a, g dbSNP:16820346
906 906 a, g dbSNP:16820345
1047 1047 c, t dbSNP:214744712
1191 1191 c, t dbSNP:8238202
1239 1239 a, t dbSNP:8238203
1257 1257 g, t dbSNP:16820368
1458 1458 a, g dbSNP:39949675
1629 1629 a, g dbSNP:16820389
1636 1636 a, g dbSNP:16820390
1639 1639 a, g dbSNP:16820391
1668 1668 a, g dbSNP:16820392
1676 1676 a, g dbSNP:247385360
1740 1740 a, g dbSNP:265710395
1758 1758 c, t dbSNP:16820393
1766 1766 -, ctta dbSNP:215474736
1770 1770 -, a dbSNP:16820394
1803 1803 c, g dbSNP:16820407
1821 1821 a, g dbSNP:36682881
1851 1851 c, t dbSNP:16820408
1909 1909 c, g dbSNP:37455177
1925 1925 a, g dbSNP:16820409
1948 1948 a, g dbSNP:16820410
1961 1961 g, t dbSNP:16820411
2077 2077 a, c dbSNP:16820412
2089 2089 -, aaaaaa dbSNP:221784299
2090 2090 -, aaaaa dbSNP:236323211
2118 2118 a, g dbSNP:16820413
2175 2175 a, g dbSNP:16820414
2178 2178 a, t dbSNP:16820415
2223 2223 c, t dbSNP:16820416
2231 2231 g, t dbSNP:16820417
2288 2288 a, g dbSNP:16820418
2310 2310 c, t dbSNP:16820419
2353 2353 a, g dbSNP:37429188
2383 2383 c, t dbSNP:16820420
2389 2389 c, t dbSNP:16820421
2414 2414 g, t dbSNP:16820422
2416 2416 g, t dbSNP:16820423
2417 2417 a, g dbSNP:37420502
2533 2533 -, aa dbSNP:218297109
2534 2534 -, aaac dbSNP:238946748
2545 2545 -, caaa dbSNP:257042663
2546 2546 -, a dbSNP:244195349
2547 2547 -, aac dbSNP:264102392
2569 2569 a, t dbSNP:243157522
2574 2574 c, t dbSNP:254243600
2584 2584 a, c dbSNP:217599855
2586 2586 -, c dbSNP:249223135
2586 2586 a, c dbSNP:238297249
2593 2593 -, ct dbSNP:387901922
2646 2646 a, g dbSNP:38074116
2665 2665 a, g dbSNP:32336557
2733 2733 g, t dbSNP:230371936
2734 2734 a, g dbSNP:249395282
2738 2738 -, ttg dbSNP:232848767
2746 2746 a, g dbSNP:226257226
2755 2755 a, g dbSNP:249755373
2855 2855 g, t dbSNP:263433262
2876 2876 c, t dbSNP:224157599
2877 2877 a, g dbSNP:238380754
2903 2903 a, g dbSNP:32039308
2932 2932 c, t dbSNP:224241434
2974 2974 c, t dbSNP:243200159
3009 3009 -, ac dbSNP:225928714
3025 3025 a, g dbSNP:254060562
3030 3030 c, t dbSNP:6253977
3067 3067 c, t dbSNP:6254040
3084 3084 a, g dbSNP:216836080
3087 3087 a, c dbSNP:232559733
3160 3160 a, g dbSNP:246097882
3252 3252 a, g dbSNP:33858527
3296 3296 a, g dbSNP:6255204
3305 3305 a, c dbSNP:6255595
3306 3306 -, t dbSNP:247357437
3318 3318 c, t dbSNP:218810414
3367 3367 c, t dbSNP:31708044
3369 3369 c, t dbSNP:213982940
3370 3370 c, t dbSNP:263158078
3413 3413 c, t dbSNP:223927046
3418 3418 a, g dbSNP:238322333
3444 3444 c, t dbSNP:249680704
3457 3457 c, g dbSNP:36473594
3461 3461 a, c dbSNP:218508952
3473 3473 c, t dbSNP:235759827
3495 3495 a, g dbSNP:264386942
3497 3497 a, t dbSNP:32128763
3504 3504 c, t dbSNP:247701299
3566 3566 -, gct dbSNP:233481776
3608 3608 a, c dbSNP:32155299
3637 3637 c, t dbSNP:32119154
3642 3642 -, cagt dbSNP:248473048
3678 3678 a, g dbSNP:31737725
3752 3752 c, t dbSNP:214002345
3780 3780 c, t dbSNP:225378165
3781 3781 a, g dbSNP:243779690
3813 3813 a, g dbSNP:219662133
3870 3870 c, t dbSNP:241791171
3918 3918 -, ct dbSNP:237597756
4007 4007 c, g dbSNP:259240528
4008 4008 c, t dbSNP:46037809
4010 4010 a, c dbSNP:231850879
4012 4012 a, g dbSNP:249617143
4015 4015 c, g dbSNP:47951447
4019 4019 g, t dbSNP:235874985
4021 4021 a, t dbSNP:264138192
4022 4022 a, g dbSNP:47407937
4073 4073 -, c dbSNP:256817825
4080 4080 c, g dbSNP:38386845
4194 4194 a, g dbSNP:37106663
4354 4354 c, t dbSNP:31898267
4377 4377 a, g dbSNP:32320740
4399 4399 c, t dbSNP:239787923
4400 4400 a, g dbSNP:257657874
4414 4414 c, t dbSNP:225319778
4471 4471 c, t dbSNP:32350455
4485 4485 -, ctt dbSNP:245545073
4540 4540 c, t dbSNP:38419961
4583 4583 g, t dbSNP:31846037
4587 4587 a, g dbSNP:31724299
4632 4632 c, t dbSNP:257919293
4641 4641 c, t dbSNP:215415203
4659 4659 a, g dbSNP:231971468
4684 4684 c, t dbSNP:36474893
4685 4685 a, g dbSNP:36404607
4687 4687 g, t dbSNP:212599472
4704 4704 c, t dbSNP:229954135
4713 4713 a, g dbSNP:32303278
4793 4793 g, t dbSNP:31998520
4800 4800 a, g dbSNP:51131119
4801 4801 a, g dbSNP:264426262
4802 4802 a, g dbSNP:49183024
4833 4833 c, t dbSNP:51983802
4852 4852 c, t dbSNP:46872855
4863 4863 c, t dbSNP:46974543
4874 4874 -, ggggc dbSNP:228671504
4880 4880 -, gggc dbSNP:235448197
4883 4883 c, g dbSNP:218949394
4891 4891 g, t dbSNP:244445855
4911 4911 c, t dbSNP:264612251
4924 4924 -, a dbSNP:241300196
4997 4997 a, g dbSNP:47516076
5013 5013 a, c dbSNP:253423808
5050 5050 a, g dbSNP:257586090
5071 5071 c, t dbSNP:225874417
5098 5098 c, t dbSNP:32135725
5099 5099 a, g dbSNP:212534126
5137 5137 c, t dbSNP:31763260
5150 5150 a, c dbSNP:260092661
5205 5205 c, g dbSNP:217968637
5218 5218 a, g dbSNP:37148838
5222 5222 a, g dbSNP:32310101
5224 5224 a, g dbSNP:220189144
5228 5228 a, g dbSNP:32377774
5288 5288 a, g dbSNP:37813356
5313 5313 a, g dbSNP:251387502
5352 5352 g, t dbSNP:218892673
5373 5373 a, g dbSNP:241294714
5403 5403 -, ggg dbSNP:231672627
5404 5404 -, gggggggg dbSNP:230867229
5408 5408 a, g dbSNP:266173319
5411 5411 -, ggggg dbSNP:387196694
5412 5412 g, t dbSNP:32035672
5412 5412 -, t dbSNP:222635263
5496 5496 c, t dbSNP:36310984
5538 5538 a, g dbSNP:32083909
5543 5543 a, g dbSNP:226381495
5576 5576 c, t dbSNP:37968628
5607 5607 a, g dbSNP:254442862
5652 5652 -, ag dbSNP:251063029
5667 5667 c, t dbSNP:227924896
5671 5671 c, t dbSNP:36417329
5723 5723 a, g dbSNP:217753278
5732 5732 a, g dbSNP:232327198
5747 5747 -, ggtccca dbSNP:246606744
5748 5748 a, g dbSNP:246464558
5945 5945 -, aaaa dbSNP:239787253
5961 5961 -, aaaaa dbSNP:387442304
5965 5965 a, g dbSNP:32163852
6020 6020 a, g dbSNP:31718912
6078 6078 a, g dbSNP:251336055
6099 6099 a, t dbSNP:213006088
6108 6108 c, t dbSNP:236524981
6125 6125 -, c dbSNP:253733993
6126 6126 -, a dbSNP:230513422
6128 6128 -, a dbSNP:386851010
6205 6205 a, c dbSNP:260932215
6211 6211 a, g dbSNP:226302337
6221 6221 a, g dbSNP:246843135
6224 6224 a, g dbSNP:49863138
6233 6233 g, t dbSNP:220240551
6353 6353 c, t dbSNP:32501171
6442 6442 c, t dbSNP:32090859
6459 6459 a, t dbSNP:32541261
6467 6467 a, g dbSNP:32188799
6479 6479 -, tcagtgtttccgtcaggg dbSNP:248348124
6505 6505 c, t dbSNP:38653448
6616 6616 c, g dbSNP:263857724
6641 6641 a, c dbSNP:13466761
6767 6767 c, t dbSNP:36545450
6835 6835 a, g dbSNP:246399800
6855 6855 a, g dbSNP:214374164
6918 6918 a, g dbSNP:31717376
7015 7015 -, ta dbSNP:234559250
7016 7016 -, aa dbSNP:238798044
7027 7027 -, aa dbSNP:387299579
7037 7037 a, g dbSNP:244151542
7072 7072 c, t dbSNP:36292757
7094 7094 a, g dbSNP:37264522
7179 7179 -, aa dbSNP:244686395

Target ORF information:

RefSeq Version NM_001113418
Organism Mus musculus (house mouse)
Definition Mus musculus peroxisome proliferator activated receptor alpha (Ppara), transcript variant 2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1-C-(k)DYK
NM_001113418

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGTGGACA CAGAGAGCCC CATCTGTCCT CTCTCCCCAC TGGAGGCAGA TGACCTGGAA 
AGTCCCTTAT CTGAAGAATT CTTACAAGAA ATGGGAAACA TTCAAGAGAT TTCTCAGTCC
ATCGGTGAGG AGAGCTCTGG AAGCTTTGGT TTTGCAGACT ACCAGTACTT AGGAAGCTGT
CCGGGCTCCG AGGGCTCTGT CATCACAGAC ACCCTCTCTC CAGCTTCCAG CCCTTCCTCA
GTCAGCTGCC CCGTGATCCC CGCCAGCACG GACGAGTCCC CCGGCAGTGC CCTGAACATC
GAGTGTCGAA TATGTGGGGA CAAGGCCTCA GGGTACCACT ACGGAGTTCA CGCATGTGAA
GGCTGTAAGG GCTTCTTTCG GCGAACTATT CGGCTGAAGC TGGTGTACGA CAAGTGTGAT
CGGAGCTGCA AGATTCAGAA GAAGAACCGG AACAAATGCC AGTACTGCCG TTTTCACAAG
TGCCTGTCTG TCGGGATGTC ACACAATGCA ATTCGCTTTG GAAGAATGCC AAGATCTGAA
AAAGCAAAAC TGAAAGCAGA AATTCTTACC TGTGAACACG ACCTGAAAGA TTCGGAAACT
GCAGACCTCA AATCTCTGGG CAAGAGAATC CACGAAGCCT ACCTGAAGAA CTTCAACATG
AACAAGGTCA AGGCCCGGGT CATACTCGCG GGAAAGACCA GCAACAACCC GCCTTTTGTC
ATACATGACA TGGAGACCTT GTGTATGGCC GAGAAGACGC TTGTGGCCAA GATGGTGGCC
AACGGCGTCG AAGACAAAGA GGCAGAGGTC CGATTCTTCC ACTGCTGCCA GTGCATGTCC
GTGGAGACCG TCACGGAGCT CACAGAATTT GCCAAGGCTA TCCCAGGCTT TGCAAACTTG
GACTTGAACG ACCAAGTCAC CTTGCTAAAG TACGGTGTGT ATGAAGCCAT CTTCACGATG
CTGTCCTCCT TGATGAACAA AGACGGGATG CTGATCGCGT ACGGCAATGG CTTTATCACA
CGCGAGTTCC TTAAGAACCT GAGGAAGCCG TTCTGTGACA TCATGGAACC CAAGTTTGAC
TTCGCTATGA AGTTCAATGC CTTAGAACTG GATGACAGTG ACATTTCCCT GTTTGTGGCT
GCTATAATTT GCTGTGGAGA TCGGCCTGGC CTTCTAAACA TAGGCTACAT TGAGAAGTTG
CAGGAGGGGA TTGTGCACGT GCTTAAGCTC CACCTGCAGA GCAACCATCC AGATGACACC
TTCCTCTTCC CAAAGCTCCT TCAAAAAATG GTGGACCTTC GGCAGCTGGT CACGGAGCAT
GCGCAGCTCG TACAGGTCAT CAAGAAGACC GAGTCCGACG CAGCGCTGCA CCCACTGTTG
CAAGAGATCT ACAGAGACAT GTACTGA

The stop codons will be deleted if pcDNA3.1-C-(k)DYK vector is selected.