| Name | Freq | Positions |
|---|
| AatII | 1 | 2617 |
| AccI | 1 | 417 |
| AceIII | 3 | 42, 746, 1986 |
| AciI | 34 | 201, 227, 496, 599, 689, 851, 879, 1006, 1025, 1146, 1391, 1762, 1853, 2090, 2255, 2332, 2441, 2587, 75, 114, 124, 150, 188, 284, 655, 665, 732, 739, 760, 1256, 1400, 2044, 2211, 2540 |
| AclI | 2 | 1924, 2297 |
| AcyI | 3 | 235, 2235, 2617 |
| AflIII | 1 | 806 |
| AhaIII | 3 | 1563, 1582, 2274 |
| AluI | 16 | 43, 62, 307, 400, 445, 470, 565, 629, 747, 973, 1063, 1109, 1366, 1887, 1987, 2050 |
| AlwNI | 1 | 1217 |
| ApaBI | 1 | 179 |
| ApaLI | 3 | 177, 1120, 2366 |
| ApoI | 1 | 450 |
| AsuI | 6 | 286, 1741, 1820, 1837, 2059, 2675 |
| AvaI | 1 | 434 |
| AvaII | 4 | 1837, 2059, 1741, 2675 |
| BamHI | 1 | 429 |
| BbvI | 12 | 41, 1213, 1216, 1422, 2116, 254, 327, 630, 711, 729, 1148, 1750 |
| BccI | 3 | 1735, 1859, 2146 |
| Bce83I | 4 | 1174, 912, 1451, 2319 |
| BcefI | 2 | 387, 1292 |
| BcgI | 1 | 2215 |
| BciVI | 2 | 1015, 2542 |
| BetI | 6 | 1012, 1159, 1990, 47, 1779, 2232 |
| BfiI | 2 | 364, 1744 |
| BglI | 2 | 245, 1813 |
| BinI | 10 | 429, 1447, 1544, 2324, 430, 1373, 1459, 1557, 2021, 2342 |
| BsaXI | 1 | 659 |
| BseMII | 5 | 1081, 1490, 1656, 171, 2196 |
| BseSI | 3 | 177, 1120, 2366 |
| BseYI | 1 | 1110 |
| BsiI | 3 | 2670, 979, 2363 |
| BsiYI | 6 | 47, 648, 822, 840, 1006, 1285 |
| BsmAI | 4 | 2531, 2684, 51, 1766 |
| Bsp24I | 2 | 1486, 2611 |
| BspHI | 3 | 1526, 2534, 2639 |
| BspLU11I | 1 | 806 |
| BspMI | 1 | 413 |
| BsrI | 11 | 1209, 1222, 2170, 365, 391, 606, 1339, 1745, 1863, 1906, 2345 |
| BsrBI | 3 | 496, 737, 2538 |
| BsrDI | 2 | 1753, 1935 |
| BtsI | 3 | 2092, 593, 2120 |
| Cac8I | 14 | 136, 284, 304, 308, 401, 405, 409, 597, 626, 735, 821, 858, 1418, 1809 |
| CauII | 7 | 47, 82, 434, 435, 1185, 1881, 2232 |
| CdiI | 2 | 1947, 2351 |
| CfrI | 3 | 388, 645, 2087 |
| Cfr10I | 1 | 1779 |
| CjeI | 8 | 182, 833, 1388, 2611, 302, 1309, 1387, 1487 |
| CjePI | 5 | 1339, 2611, 1486, 1606, 2078 |
| CstMI | 2 | 215, 2052 |
| CviJI | 45 | 43, 62, 95, 135, 139, 253, 287, 307, 389, 400, 445, 470, 522, 543, 565, 629, 646, 728, 747, 820, 831, 849, 875, 973, 1063, 1109, 1114, 1139, 1218, 1283, 1294, 1337, 1366, 1729, 1741, 1782, 1808, 1812, 1821, 1887, 1977, 1987, 2050, 2088, 2675 |
| CviRI | 13 | 40, 178, 329, 404, 412, 632, 1121, 1417, 1752, 1842, 2035, 2123, 2367 |
| DdeI | 6 | 171, 1081, 1490, 1656, 2196, 2622 |
| DpnI | 15 | 277, 430, 1373, 1448, 1459, 1467, 1545, 1557, 1662, 2003, 2021, 2067, 2325, 2342, 2378 |
| DraII | 1 | 2674 |
| DrdI | 2 | 91, 908 |
| Eam1105I | 1 | 1694 |
| EciI | 3 | 878, 1024, 1852 |
| Eco31I | 1 | 1766 |
| Eco57I | 2 | 1333, 2381 |
| Eco57MI | 3 | 1333, 1784, 2381 |
| EcoRI | 1 | 450 |
| EcoRII | 9 | 354, 545, 833, 954, 967, 47, 434, 1185, 2232 |
| Esp3I | 2 | 2683, 51 |
| FauI | 5 | 598, 114, 124, 284, 655 |
| FnuDII | 10 | 2, 4, 107, 652, 654, 852, 1433, 1763, 2256, 2588 |
| Fnu4HI | 19 | 41, 150, 254, 327, 630, 711, 729, 732, 850, 1005, 1148, 1213, 1216, 1422, 1750, 2089, 2116, 2211, 2440 |
| FokI | 5 | 77, 321, 1679, 1860, 2147 |
| GdiII | 3 | 388, 645, 2087 |
| GsuI | 1 | 1784 |
| HaeI | 6 | 819, 830, 1282, 388, 645, 2674 |
| HaeII | 3 | 235, 680, 1050 |
| HaeIII | 11 | 287, 389, 646, 820, 831, 849, 1283, 1741, 1821, 2088, 2675 |
| HaeIV | 1 | 1694 |
| HgaI | 4 | 908, 1486, 108, 2236 |
| HgiAI | 6 | 177, 444, 1120, 2281, 2366, 2589 |
| HgiCI | 4 | 235, 438, 550, 1647 |
| HgiJII | 1 | 444 |
| HhaI | 17 | 3, 106, 236, 257, 588, 653, 681, 714, 984, 1051, 1151, 1325, 1434, 1827, 1920, 2257, 2589 |
| Hin4I | 2 | 1694, 1768 |
| HindII | 1 | 417 |
| HindIII | 1 | 399 |
| HinfI | 6 | 420, 641, 706, 781, 1177, 1694 |
| HpaII | 13 | 48, 82, 435, 524, 1013, 1160, 1186, 1376, 1780, 1814, 1881, 1991, 2233 |
| HphI | 7 | 12, 21, 2173, 2414, 1550, 1777, 2399 |
| Hpy99I | 5 | 372, 385, 907, 1701, 1964 |
| Hpy178III | 13 | 369, 423, 610, 1039, 1173, 1271, 1369, 1452, 1526, 1785, 2534, 2639, 2669 |
| Hpy188I | 10 | 31, 156, 918, 996, 1349, 1483, 1618, 2064, 2075, 2195 |
| KpnI | 1 | 438 |
| Ksp632I | 3 | 290, 684, 2488 |
| MaeI | 4 | 424, 1301, 1554, 1889 |
| MaeII | 5 | 374, 1509, 1925, 2298, 2618 |
| MaeIII | 11 | 57, 348, 368, 1163, 1226, 1342, 1625, 1956, 2014, 2167, 2355 |
| MboI | 15 | 277, 430, 1373, 1448, 1459, 1467, 1545, 1557, 1662, 2003, 2021, 2067, 2325, 2342, 2378 |
| MboII | 8 | 1304, 1456, 291, 685, 1547, 2302, 2380, 2489 |
| McrI | 5 | 276, 719, 1143, 2066, 2215 |
| MmeI | 2 | 996, 1180 |
| MnlI | 13 | 29, 289, 695, 978, 1856, 2062, 427, 662, 921, 1245, 1645, 1726, 2673 |
| MseI | 13 | 142, 339, 577, 636, 1512, 1564, 1569, 1583, 1636, 1871, 1910, 2275, 2647 |
| MslI | 3 | 1947, 2106, 2465 |
| MstI | 2 | 256, 1919 |
| MwoI | 13 | 179, 229, 236, 245, 275, 396, 544, 588, 672, 739, 853, 1425, 1813 |
| NarI | 1 | 235 |
| NdeI | 1 | 183 |
| NlaIII | 11 | 38, 406, 461, 807, 1527, 2018, 2028, 2106, 2142, 2535, 2640 |
| NlaIV | 11 | 235, 429, 438, 550, 836, 875, 1647, 1741, 1782, 1993, 2583 |
| NspI | 3 | 37, 405, 806 |
| NspBII | 6 | 112, 306, 628, 1146, 1391, 2332 |
| PasI | 1 | 433 |
| PfoI | 1 | 46 |
| PleI | 4 | 1177, 420, 706, 1694 |
| PpiI | 2 | 1497, 2340 |
| PpuMI | 1 | 2674 |
| PstI | 1 | 411 |
| PvuI | 2 | 276, 2066 |
| PvuII | 2 | 306, 628 |
| RsaI | 3 | 168, 439, 2178 |
| SacI | 1 | 444 |
| SalI | 1 | 417 |
| SapI | 1 | 683 |
| ScaI | 1 | 2177 |
| ScrFI | 12 | 47, 82, 354, 434, 435, 545, 833, 954, 967, 1185, 1881, 2232 |
| SduI | 5 | 177, 444, 1120, 2281, 2366 |
| SecI | 5 | 354, 433, 434, 545, 966 |
| SexAI | 1 | 1184 |
| SfaNI | 8 | 153, 229, 894, 1946, 2386, 78, 208, 2156 |
| SfeI | 4 | 411, 1071, 1262, 1940 |
| SimI | 3 | 1480, 999, 1768 |
| SmaI | 1 | 434 |
| SmlI | 4 | 912, 1174, 1451, 2319 |
| SphI | 1 | 405 |
| Sse8387I | 1 | 410 |
| Sse8647I | 1 | 2674 |
| SspI | 1 | 2501 |
| Sth132I | 24 | 47, 97, 434, 598, 933, 1132, 1141, 1185, 1699, 2232, 2600, 83, 115, 125, 285, 436, 611, 656, 1040, 1478, 1723, 1882, 2245, 2306 |
| StyI | 1 | 433 |
| TaqI | 4 | 418, 448, 906, 2350 |
| TatI | 2 | 167, 2177 |
| TauI | 7 | 150, 732, 850, 1005, 2089, 2211, 2440 |
| TfiI | 5 | 641, 781, 420, 706, 1694 |
| TseI | 16 | 41, 254, 327, 630, 711, 729, 1148, 1213, 1216, 1422, 1750, 2116, 850, 1005, 2089, 2440 |
| Tsp45I | 4 | 57, 368, 1956, 2167 |
| Tsp4CI | 8 | 19, 54, 262, 768, 839, 1309, 1622, 2137 |
| TspDTI | 4 | 639, 1575, 1677, 1980 |
| TspEI | 7 | 451, 487, 504, 579, 1567, 1873, 2128 |
| TspGWI | 2 | 2466, 2149 |
| TspRI | 20 | 392, 593, 702, 1208, 1221, 1492, 1641, 1746, 2093, 2120, 390, 591, 700, 1206, 1219, 1490, 1639, 1744, 2091, 2118 |
| Tth111II | 3 | 1380, 1419, 1413 |
| VspI | 3 | 576, 635, 1870 |
| XbaI | 1 | 423 |
| XhoII | 7 | 429, 1447, 1458, 1544, 1556, 2324, 2341 |
| XmnI | 1 | 2294 |