| Name | Freq | Positions |
|---|
| AatII | 1 | 2641 |
| AccI | 1 | 448 |
| AceIII | 3 | 42, 770, 2010 |
| AciI | 32 | 201, 227, 520, 623, 713, 875, 903, 1030, 1049, 1170, 1415, 1786, 1877, 2114, 2279, 2356, 2465, 2611, 124, 150, 188, 284, 679, 689, 756, 763, 784, 1280, 1424, 2068, 2235, 2564 |
| AclI | 2 | 1948, 2321 |
| AcyI | 3 | 235, 2259, 2641 |
| AflIII | 1 | 830 |
| AhaIII | 3 | 1587, 1606, 2298 |
| AlfI | 1 | 455 |
| AluI | 16 | 43, 62, 307, 403, 472, 494, 589, 653, 771, 997, 1087, 1133, 1390, 1911, 2011, 2074 |
| AlwNI | 1 | 1241 |
| ApaI | 1 | 442 |
| ApaBI | 1 | 179 |
| ApaLI | 3 | 177, 1144, 2390 |
| ApoI | 1 | 396 |
| AsuI | 8 | 286, 442, 443, 1765, 1844, 1861, 2083, 2699 |
| AvaI | 1 | 439 |
| AvaII | 5 | 1861, 2083, 443, 1765, 2699 |
| BamHI | 1 | 435 |
| BbvI | 12 | 41, 1237, 1240, 1446, 2140, 254, 327, 654, 735, 753, 1172, 1774 |
| BccI | 3 | 1759, 1883, 2170 |
| Bce83I | 4 | 1198, 936, 1475, 2343 |
| BcefI | 2 | 387, 1316 |
| BcgI | 1 | 2239 |
| BciVI | 2 | 1039, 2566 |
| BetI | 6 | 1036, 1183, 2014, 47, 1803, 2256 |
| BfiI | 2 | 364, 1768 |
| BglI | 2 | 245, 1837 |
| BinI | 10 | 435, 1471, 1568, 2348, 436, 1397, 1483, 1581, 2045, 2366 |
| BsaXI | 1 | 683 |
| BseMII | 5 | 1105, 1514, 1680, 171, 2220 |
| BseSI | 4 | 177, 442, 1144, 2390 |
| BseYI | 1 | 1134 |
| BsiI | 3 | 2694, 1003, 2387 |
| BsiYI | 6 | 47, 672, 846, 864, 1030, 1309 |
| BsmI | 1 | 418 |
| BsmAI | 4 | 2555, 2708, 51, 1790 |
| Bsp24I | 2 | 1510, 2635 |
| BspHI | 3 | 1550, 2558, 2663 |
| BspLU11I | 1 | 830 |
| BsrI | 11 | 1233, 1246, 2194, 365, 391, 630, 1363, 1769, 1887, 1930, 2369 |
| BsrBI | 3 | 520, 761, 2562 |
| BsrDI | 2 | 1777, 1959 |
| BtsI | 3 | 2116, 617, 2144 |
| Cac8I | 14 | 136, 284, 304, 308, 461, 465, 469, 621, 650, 759, 845, 882, 1442, 1833 |
| CauII | 7 | 47, 82, 439, 440, 1209, 1905, 2256 |
| CdiI | 2 | 1971, 2375 |
| CfrI | 3 | 388, 669, 2111 |
| Cfr10I | 1 | 1803 |
| CjeI | 8 | 182, 857, 1412, 2635, 302, 1333, 1411, 1511 |
| CjePI | 5 | 1363, 2635, 1510, 1630, 2102 |
| CstMI | 2 | 215, 2076 |
| CviJI | 47 | 43, 62, 95, 135, 139, 253, 287, 307, 389, 403, 443, 460, 472, 494, 546, 567, 589, 653, 670, 752, 771, 844, 855, 873, 899, 997, 1087, 1133, 1138, 1163, 1242, 1307, 1318, 1361, 1390, 1753, 1765, 1806, 1832, 1836, 1845, 1911, 2001, 2011, 2074, 2112, 2699 |
| CviRI | 15 | 40, 178, 329, 421, 454, 464, 468, 656, 1145, 1441, 1776, 1866, 2059, 2147, 2391 |
| DdeI | 6 | 171, 1105, 1514, 1680, 2220, 2646 |
| DpnI | 15 | 277, 436, 1397, 1472, 1483, 1491, 1569, 1581, 1686, 2027, 2045, 2091, 2349, 2366, 2402 |
| DraII | 1 | 2698 |
| DrdI | 2 | 91, 932 |
| Eam1105I | 1 | 1718 |
| EciI | 3 | 902, 1048, 1876 |
| Eco31I | 1 | 1790 |
| Eco57I | 2 | 1357, 2405 |
| Eco57MI | 3 | 1357, 1808, 2405 |
| EcoRI | 1 | 396 |
| EcoRII | 9 | 354, 569, 857, 978, 991, 47, 439, 1209, 2256 |
| EcoRV | 1 | 429 |
| Esp3I | 2 | 2707, 51 |
| FauI | 5 | 622, 114, 124, 284, 679 |
| FnuDII | 11 | 2, 4, 107, 415, 676, 678, 876, 1457, 1787, 2280, 2612 |
| Fnu4HI | 19 | 41, 150, 254, 327, 654, 735, 753, 756, 874, 1029, 1172, 1237, 1240, 1446, 1774, 2113, 2140, 2235, 2464 |
| FokI | 5 | 77, 321, 1703, 1884, 2171 |
| GdiII | 3 | 388, 669, 2111 |
| GsuI | 1 | 1808 |
| HaeI | 7 | 459, 843, 854, 1306, 388, 669, 2698 |
| HaeII | 3 | 235, 704, 1074 |
| HaeIII | 13 | 287, 389, 443, 460, 670, 844, 855, 873, 1307, 1765, 1845, 2112, 2699 |
| HaeIV | 2 | 429, 1718 |
| HgaI | 4 | 932, 1510, 108, 2260 |
| HgiAI | 6 | 177, 402, 1144, 2305, 2390, 2613 |
| HgiCI | 4 | 235, 408, 574, 1671 |
| HgiJII | 2 | 402, 442 |
| HhaI | 17 | 3, 106, 236, 257, 612, 677, 705, 738, 1008, 1075, 1175, 1349, 1458, 1851, 1944, 2281, 2613 |
| Hin4I | 3 | 429, 1718, 1792 |
| HindII | 1 | 448 |
| HindIII | 1 | 471 |
| HinfI | 5 | 665, 730, 805, 1201, 1718 |
| HpaII | 13 | 48, 82, 440, 548, 1037, 1184, 1210, 1400, 1804, 1838, 1905, 2015, 2257 |
| HphI | 7 | 12, 21, 2197, 2438, 1574, 1801, 2423 |
| Hpy99I | 6 | 372, 385, 447, 931, 1725, 1988 |
| Hpy178III | 14 | 369, 414, 425, 634, 1063, 1197, 1295, 1393, 1476, 1550, 1809, 2558, 2663, 2693 |
| Hpy188I | 11 | 31, 156, 433, 942, 1020, 1373, 1507, 1642, 2088, 2099, 2219 |
| KpnI | 1 | 408 |
| Ksp632I | 3 | 290, 708, 2512 |
| MaeI | 4 | 426, 1325, 1578, 1913 |
| MaeII | 5 | 374, 1533, 1949, 2322, 2642 |
| MaeIII | 11 | 57, 348, 368, 1187, 1250, 1366, 1649, 1980, 2038, 2191, 2379 |
| MboI | 15 | 277, 436, 1397, 1472, 1483, 1491, 1569, 1581, 1686, 2027, 2045, 2091, 2349, 2366, 2402 |
| MboII | 8 | 1328, 1480, 291, 709, 1571, 2326, 2404, 2513 |
| McrI | 5 | 276, 743, 1167, 2090, 2239 |
| MmeI | 2 | 1020, 1204 |
| MnlI | 14 | 29, 289, 412, 719, 1002, 1880, 2086, 458, 686, 945, 1269, 1669, 1750, 2697 |
| MseI | 13 | 142, 339, 601, 660, 1536, 1588, 1593, 1607, 1660, 1895, 1934, 2299, 2671 |
| MslI | 3 | 1971, 2130, 2489 |
| MstI | 2 | 256, 1943 |
| MwoI | 13 | 179, 229, 236, 245, 275, 469, 568, 612, 696, 763, 877, 1449, 1837 |
| NarI | 1 | 235 |
| NdeI | 1 | 183 |
| NlaIII | 11 | 38, 466, 485, 831, 1551, 2042, 2052, 2130, 2166, 2559, 2664 |
| NlaIV | 12 | 235, 408, 435, 442, 574, 860, 899, 1671, 1765, 1806, 2017, 2607 |
| NruI | 1 | 414 |
| NspI | 3 | 37, 465, 830 |
| NspBII | 6 | 112, 306, 652, 1170, 1415, 2356 |
| PfoI | 1 | 46 |
| PleI | 3 | 1201, 730, 1718 |
| PpiI | 2 | 1521, 2364 |
| PpuMI | 1 | 2698 |
| PstI | 1 | 453 |
| PvuI | 2 | 276, 2090 |
| PvuII | 2 | 306, 652 |
| RsaI | 3 | 168, 409, 2202 |
| SacI | 1 | 402 |
| SalI | 1 | 448 |
| SapI | 1 | 707 |
| ScaI | 1 | 2201 |
| ScrFI | 12 | 47, 82, 354, 439, 440, 569, 857, 978, 991, 1209, 1905, 2256 |
| SduI | 6 | 177, 402, 442, 1144, 2305, 2390 |
| SecI | 4 | 354, 439, 569, 990 |
| SexAI | 1 | 1208 |
| SfaNI | 9 | 153, 229, 422, 918, 1970, 2410, 78, 208, 2180 |
| SfeI | 4 | 453, 1095, 1286, 1964 |
| SimI | 3 | 1504, 1023, 1792 |
| SmaI | 1 | 439 |
| SmlI | 4 | 936, 1198, 1475, 2343 |
| SphI | 1 | 465 |
| Sse8647I | 1 | 2698 |
| SspI | 1 | 2525 |
| Sth132I | 26 | 47, 97, 439, 445, 622, 957, 1156, 1165, 1209, 1723, 2256, 2624, 83, 115, 125, 132, 285, 441, 635, 680, 1064, 1502, 1747, 1906, 2269, 2330 |
| StuI | 1 | 459 |
| TaqI | 4 | 400, 449, 930, 2374 |
| TatI | 2 | 167, 2201 |
| TauI | 7 | 150, 756, 874, 1029, 2113, 2235, 2464 |
| TfiI | 4 | 665, 805, 730, 1718 |
| TseI | 16 | 41, 254, 327, 654, 735, 753, 1172, 1237, 1240, 1446, 1774, 2140, 874, 1029, 2113, 2464 |
| Tsp45I | 4 | 57, 368, 1980, 2191 |
| Tsp4CI | 8 | 19, 54, 262, 792, 863, 1333, 1646, 2161 |
| TspDTI | 4 | 663, 1599, 1701, 2004 |
| TspEI | 7 | 397, 511, 528, 603, 1591, 1897, 2152 |
| TspGWI | 2 | 2490, 2173 |
| TspRI | 20 | 392, 617, 726, 1232, 1245, 1516, 1665, 1770, 2117, 2144, 390, 615, 724, 1230, 1243, 1514, 1663, 1768, 2115, 2142 |
| Tth111II | 3 | 1404, 1443, 1437 |
| VspI | 3 | 600, 659, 1894 |
| XbaI | 1 | 425 |
| XhoII | 7 | 435, 1471, 1482, 1568, 1580, 2348, 2365 |
| XmnI | 1 | 2318 |