| Name | Freq | Positions |
|---|
| AatII | 2 | 988, 4439 |
| AccI | 3 | 2250, 2257, 4442 |
| AceIII | 5 | 1043, 2571, 3808, 543, 1502 |
| AciI | 62 | 202, 229, 749, 761, 770, 782, 792, 803, 849, 984, 1173, 1240, 1290, 1376, 1591, 1742, 1765, 1894, 2016, 2019, 2321, 2424, 2514, 2676, 2704, 2831, 2850, 2971, 3216, 3584, 3675, 3912, 4077, 4154, 4263, 4409, 4505, 4852, 108, 157, 171, 174, 1108, 1310, 1334, 1356, 1553, 1601, 1714, 1744, 1904, 2085, 2480, 2490, 2557, 2564, 2585, 3081, 3225, 3866, 4033, 4362 |
| AclI | 2 | 3746, 4119 |
| AcyI | 5 | 988, 1956, 2060, 4057, 4439 |
| AflII | 1 | 4840 |
| AflIII | 2 | 2631, 4672 |
| AhaIII | 4 | 3385, 3404, 4096, 4846 |
| AlfI | 2 | 630, 702 |
| AloI | 1 | 422 |
| AluI | 30 | 120, 287, 544, 864, 918, 928, 1044, 1076, 1118, 1503, 1728, 1793, 1822, 2134, 2267, 2273, 2295, 2390, 2454, 2572, 2798, 2888, 2934, 3191, 3709, 3809, 3872, 4578, 4826, 4838 |
| AlwNI | 2 | 3042, 4519 |
| ApaBI | 4 | 640, 712, 1264, 1540 |
| ApaLI | 5 | 1245, 1547, 2945, 4188, 4476 |
| ApoI | 4 | 558, 1208, 2170, 4571 |
| AsuI | 10 | 381, 1364, 1373, 1515, 1914, 3563, 3642, 3659, 3881, 4661 |
| AvaI | 1 | 922 |
| AvaII | 6 | 1373, 1914, 3659, 3881, 1364, 3563 |
| AvrII | 1 | 901 |
| BalI | 1 | 514 |
| BamHI | 1 | 4819 |
| BbvI | 18 | 193, 1042, 1300, 1693, 1820, 2132, 3038, 3041, 3244, 3938, 1119, 1331, 2455, 2536, 2554, 2973, 3572, 4644 |
| BbvII | 1 | 57 |
| BccI | 10 | 384, 765, 3557, 3681, 3968, 4889, 366, 1127, 1459, 1919 |
| Bce83I | 4 | 2999, 2737, 3273, 4141 |
| BcefI | 6 | 332, 1803, 3117, 1242, 1672, 1907 |
| BcgI | 1 | 4037 |
| BciVI | 3 | 137, 2840, 4364 |
| BclI | 2 | 952, 4856 |
| BetI | 8 | 1186, 1723, 1859, 2837, 2984, 3812, 3601, 4054 |
| BfiI | 2 | 785, 3566 |
| BglI | 2 | 516, 3635 |
| BglII | 1 | 4456 |
| BinI | 18 | 947, 1736, 2089, 3269, 3366, 4146, 4448, 4819, 1430, 1857, 2074, 3198, 3281, 3379, 3843, 4164, 4465, 4820 |
| BplI | 1 | 845 |
| Bpu10I | 1 | 4623 |
| BsaAI | 3 | 373, 959, 1991 |
| BsaXI | 3 | 1023, 422, 2484 |
| BseMII | 9 | 2906, 3312, 3478, 4483, 103, 861, 4018, 4553, 4988 |
| BseRI | 1 | 882 |
| BseSI | 5 | 1245, 1547, 2945, 4188, 4476 |
| BseYI | 6 | 622, 694, 1961, 75, 121, 2935 |
| BsiI | 4 | 1065, 1544, 2804, 4185 |
| BsiYI | 14 | 150, 476, 803, 1180, 1243, 1530, 1639, 1860, 2080, 2473, 2647, 2665, 2831, 3110 |
| BsmI | 1 | 2200 |
| BsmAI | 4 | 1028, 4353, 3588, 4809 |
| Bsp24I | 5 | 1579, 2060, 3308, 1962, 4433 |
| BspHI | 2 | 3348, 4356 |
| BspLU11I | 1 | 2631 |
| BspMI | 1 | 1269 |
| BspMII | 3 | 1186, 1723, 1859 |
| BsrI | 14 | 459, 1446, 1611, 3034, 3047, 3992, 786, 2431, 3164, 3567, 3685, 3728, 4167, 4518 |
| BsrBI | 6 | 229, 2321, 1354, 1712, 2562, 4360 |
| BsrDI | 2 | 3575, 3757 |
| BtgZI | 4 | 1622, 4652, 385, 4977 |
| BtsI | 4 | 3914, 2196, 2418, 3942 |
| Cac8I | 24 | 67, 71, 213, 227, 270, 626, 645, 698, 717, 1288, 1489, 1549, 1729, 1892, 2063, 2422, 2451, 2560, 2646, 2683, 3240, 3631, 4564, 4884 |
| CauII | 8 | 922, 923, 1750, 1866, 2056, 3010, 3703, 4054 |
| CdiI | 13 | 385, 1167, 3769, 4977, 1081, 1126, 1498, 1623, 1813, 1838, 1918, 4173, 4653 |
| CfrI | 7 | 514, 1170, 1335, 1588, 1905, 2470, 3909 |
| Cfr10I | 4 | 270, 1303, 2063, 3601 |
| CjeI | 13 | 871, 1962, 2658, 3213, 4433, 4889, 668, 1395, 1580, 2061, 3134, 3212, 3309 |
| CjePI | 10 | 1962, 3164, 4433, 1579, 1817, 2060, 3308, 3428, 3900, 4465 |
| CstMI | 2 | 232, 3874 |
| CviJI | 93 | 90, 98, 120, 126, 273, 287, 301, 382, 515, 524, 544, 617, 689, 812, 841, 847, 864, 887, 899, 905, 918, 928, 972, 1044, 1076, 1118, 1171, 1220, 1302, 1315, 1336, 1346, 1364, 1492, 1503, 1516, 1562, 1589, 1671, 1681, 1728, 1746, 1793, 1822, 1864, 1906, 1922, 2039, 2066, 2134, 2267, 2273, 2295, 2347, 2368, 2390, 2454, 2471, 2553, 2572, 2645, 2656, 2674, 2700, 2798, 2888, 2934, 2939, 2964, 3043, 3108, 3119, 3162, 3191, 3551, 3563, 3604, 3630, 3634, 3643, 3709, 3799, 3809, 3872, 3910, 4516, 4578, 4594, 4662, 4826, 4838, 4861, 4887 |
| CviRI | 29 | 639, 648, 711, 720, 835, 911, 1041, 1165, 1232, 1246, 1263, 1299, 1548, 1732, 1819, 2131, 2199, 2457, 2946, 3239, 3574, 3664, 3857, 3945, 4189, 4477, 4609, 4731, 4975 |
| DdeI | 11 | 103, 861, 1343, 2906, 3312, 3478, 4018, 4483, 4553, 4624, 4988 |
| DpnI | 29 | 948, 953, 1009, 1142, 1327, 1340, 1430, 1737, 1857, 2074, 2090, 3198, 3270, 3281, 3289, 3367, 3379, 3484, 3825, 3843, 3889, 4147, 4164, 4200, 4449, 4457, 4465, 4820, 4857 |
| DraIII | 3 | 373, 1248, 1541 |
| DrdI | 4 | 416, 1463, 1844, 2733 |
| DsaI | 4 | 808, 1317, 1673, 1742 |
| Eam1105I | 1 | 3516 |
| EciI | 8 | 107, 760, 781, 791, 802, 2703, 2849, 3674 |
| Eco31I | 2 | 3588, 4809 |
| Eco57I | 2 | 3158, 4203 |
| Eco57MI | 7 | 1612, 1666, 2099, 3158, 2078, 3606, 4203 |
| EcoRI | 1 | 1208 |
| EcoRII | 11 | 614, 669, 686, 2370, 2658, 2779, 2792, 4927, 922, 3010, 4054 |
| Esp3I | 1 | 1027 |
| FauI | 12 | 228, 748, 769, 1239, 1289, 1893, 2423, 174, 1108, 1356, 2085, 2480 |
| FnuDII | 24 | 146, 170, 190, 566, 985, 1174, 1309, 1420, 1486, 1552, 1701, 1743, 1903, 2084, 2477, 2479, 2677, 3255, 3585, 4078, 4410, 4563, 4651, 4673 |
| Fnu4HI | 35 | 157, 171, 193, 848, 1042, 1119, 1172, 1300, 1331, 1334, 1590, 1693, 1741, 1744, 1820, 1904, 2018, 2132, 2455, 2536, 2554, 2557, 2675, 2830, 2973, 3038, 3041, 3244, 3572, 3911, 3938, 4033, 4262, 4504, 4644 |
| FokI | 8 | 80, 1321, 2070, 766, 1721, 3501, 3682, 3969 |
| GdiII | 6 | 1170, 1335, 1905, 2470, 1588, 3909 |
| GsuI | 5 | 1612, 1666, 2099, 2078, 3606 |
| HaeI | 8 | 514, 898, 1314, 2644, 2655, 3107, 1363, 2470 |
| HaeII | 4 | 216, 224, 2505, 2875 |
| HaeIII | 23 | 382, 515, 524, 841, 847, 899, 1171, 1315, 1336, 1364, 1516, 1589, 1671, 1906, 2471, 2645, 2656, 2674, 3108, 3563, 3643, 3910, 4662 |
| HaeIV | 2 | 1423, 3516 |
| HgaI | 9 | 1699, 1844, 1956, 2060, 2733, 3308, 1026, 1478, 4058 |
| HgiAI | 11 | 1245, 1547, 2945, 4103, 4188, 4476, 4825, 147, 217, 225, 4411 |
| HgiCI | 6 | 334, 1539, 2375, 3469, 4831, 4934 |
| HgiJII | 4 | 89, 125, 300, 4825 |
| HhaI | 29 | 147, 160, 169, 191, 217, 225, 1122, 1175, 1419, 1487, 1702, 1829, 1902, 2083, 2413, 2478, 2506, 2539, 2809, 2876, 2976, 3150, 3256, 3649, 3742, 4079, 4411, 4562, 4642 |
| Hin4I | 7 | 1022, 1423, 1556, 3516, 3590, 4820, 4990 |
| HindII | 3 | 1799, 2257, 4442 |
| HindIII | 1 | 4837 |
| HinfI | 16 | 423, 445, 1061, 1183, 1383, 1634, 2009, 2046, 2466, 2531, 2606, 3002, 3516, 4617, 4685, 4789 |
| HpaII | 21 | 271, 923, 1187, 1304, 1537, 1724, 1750, 1860, 1866, 2056, 2064, 2349, 2838, 2985, 3011, 3201, 3602, 3636, 3703, 3813, 4055 |
| HphI | 8 | 363, 3995, 4236, 981, 3372, 3599, 4221, 4757 |
| Hpy99I | 17 | 987, 1483, 1843, 1955, 2256, 2732, 3523, 3786, 4441, 4444, 269, 1123, 1241, 1740, 1939, 2017, 2062 |
| Hpy178III | 23 | 870, 996, 1179, 1186, 1495, 1575, 1665, 1723, 1774, 1859, 1911, 2435, 2864, 2998, 3096, 3194, 3274, 3348, 3607, 4356, 4451, 4461, 4650 |
| Hpy188I | 25 | 102, 316, 860, 945, 950, 1006, 1031, 1049, 1371, 1789, 1854, 1972, 2043, 2743, 2821, 3174, 3305, 3440, 3886, 3897, 4017, 4498, 4817, 4822, 4987 |
| KpnI | 1 | 4831 |
| Ksp632I | 2 | 2509, 4310 |
| MaeI | 10 | 130, 222, 902, 2205, 2265, 2269, 3126, 3376, 3711, 4878 |
| MaeII | 13 | 264, 374, 417, 429, 960, 989, 1259, 1992, 3331, 3747, 4120, 4440, 4766 |
| MaeIII | 12 | 186, 198, 1256, 2145, 2988, 3051, 3167, 3447, 3778, 3836, 3989, 4177 |
| MboI | 29 | 948, 953, 1009, 1142, 1327, 1340, 1430, 1737, 1857, 2074, 2090, 3198, 3270, 3281, 3289, 3367, 3379, 3484, 3825, 3843, 3889, 4147, 4164, 4200, 4449, 4457, 4465, 4820, 4857 |
| MboII | 14 | 57, 1058, 3129, 3278, 4614, 244, 1659, 1662, 2106, 2510, 3369, 4124, 4202, 4311 |
| McrI | 9 | 1170, 1305, 1326, 1335, 1905, 2544, 2968, 3888, 4037 |
| MfeI | 1 | 4605 |
| MluI | 1 | 4672 |
| MmeI | 6 | 1031, 1565, 2821, 3005, 419, 4542 |
| MnlI | 36 | 338, 852, 858, 1543, 2077, 2262, 2520, 2803, 3678, 3884, 4715, 4863, 4905, 48, 105, 839, 845, 882, 885, 897, 1052, 1089, 1313, 1520, 1619, 1646, 1669, 1717, 1975, 2487, 2746, 3070, 3467, 3548, 4546, 4967 |
| MseI | 21 | 165, 436, 534, 551, 562, 572, 2402, 2461, 3334, 3386, 3391, 3405, 3458, 3693, 3732, 4097, 4513, 4575, 4678, 4841, 4847 |
| MslI | 4 | 3769, 3928, 4287, 4761 |
| MstI | 1 | 3741 |
| MwoI | 33 | 75, 99, 160, 162, 204, 231, 261, 516, 640, 712, 763, 842, 848, 1166, 1233, 1264, 1316, 1325, 1347, 1356, 1478, 1540, 1693, 1720, 1820, 2369, 2413, 2497, 2564, 2678, 3247, 3635, 4635 |
| NaeI | 2 | 270, 2063 |
| NcoI | 2 | 808, 1317 |
| NdeI | 1 | 1414 |
| NlaIII | 19 | 72, 646, 718, 809, 1318, 1401, 1436, 2095, 2243, 2286, 2632, 3349, 3840, 3850, 3928, 3964, 4357, 4611, 4733 |
| NlaIV | 20 | 301, 313, 334, 617, 689, 1539, 1562, 1746, 1862, 2375, 2661, 2700, 3469, 3563, 3604, 3815, 4405, 4819, 4831, 4934 |
| NruI | 1 | 4650 |
| NspI | 5 | 71, 645, 717, 2631, 4732 |
| NspBII | 9 | 119, 1290, 1599, 1742, 2453, 2971, 3216, 4154, 4852 |
| PfoI | 1 | 2055 |
| PleI | 6 | 423, 3002, 445, 2531, 3516, 4685 |
| PmaCI | 2 | 959, 1991 |
| PmeI | 1 | 4845 |
| PpiI | 4 | 3319, 423, 1619, 4162 |
| PshAI | 1 | 988 |
| PsiI | 3 | 501, 2137, 4794 |
| PstI | 1 | 1298 |
| PvuI | 2 | 1326, 3888 |
| PvuII | 2 | 119, 2453 |
| RsaI | 6 | 1881, 1934, 4000, 4487, 4657, 4832 |
| RsrII | 1 | 1372 |
| SacI | 1 | 4825 |
| SacII | 1 | 1742 |
| SalI | 2 | 2257, 4442 |
| SapI | 1 | 2508 |
| ScaI | 2 | 1933, 3999 |
| ScrFI | 16 | 614, 669, 686, 922, 923, 1750, 1866, 2056, 2370, 2658, 2779, 2792, 3010, 3703, 4054, 4927 |
| SduI | 10 | 89, 125, 300, 1245, 1547, 2945, 4103, 4188, 4476, 4825 |
| SecI | 14 | 613, 685, 808, 843, 901, 922, 1317, 1518, 1673, 1742, 1973, 2370, 2791, 4926 |
| SexAI | 2 | 668, 3009 |
| SfaNI | 18 | 649, 721, 1166, 1233, 1720, 2163, 2719, 3768, 4208, 4976, 81, 1039, 1322, 1507, 1817, 1839, 3978, 4501 |
| SfeI | 6 | 152, 1298, 2896, 3087, 3762, 4691 |
| SfiI | 1 | 515 |
| SgfI | 1 | 1325 |
| SimI | 6 | 1834, 3302, 342, 2824, 3590, 4924 |
| SmaI | 1 | 922 |
| SmlI | 5 | 2737, 2999, 3273, 4141, 4840 |
| SphI | 3 | 71, 645, 717 |
| SspI | 1 | 4323 |
| Sth132I | 41 | 228, 280, 748, 769, 922, 1180, 1239, 1289, 1529, 1893, 2423, 2758, 2957, 2966, 3010, 3521, 4054, 4422, 4462, 4910, 175, 297, 924, 1109, 1357, 1630, 1751, 1867, 1876, 2057, 2086, 2436, 2481, 2865, 3300, 3545, 3704, 4067, 4128, 4452, 4660 |
| StuI | 1 | 898 |
| StyI | 5 | 808, 901, 1317, 613, 685 |
| TaqI | 15 | 340, 996, 1011, 1020, 1080, 1497, 1710, 1812, 1837, 2007, 2258, 2731, 4172, 4443, 4865 |
| TatI | 4 | 1933, 3999, 4486, 1880 |
| TauI | 17 | 157, 171, 848, 1172, 1334, 1590, 1741, 1744, 1904, 2018, 2557, 2675, 2830, 3911, 4033, 4262, 4504 |
| TfiI | 14 | 1061, 1183, 1383, 1634, 2009, 2046, 2466, 2606, 4617, 4789, 445, 2531, 3516, 4685 |
| TseI | 28 | 193, 1042, 1119, 1300, 1331, 1693, 1820, 2132, 2455, 2536, 2554, 2973, 3038, 3041, 3244, 3572, 3938, 4644, 848, 1172, 1590, 1741, 2018, 2675, 2830, 3911, 4262, 4504 |
| Tsp45I | 4 | 198, 1256, 3778, 3989 |
| Tsp4CI | 12 | 399, 1454, 1469, 1871, 2254, 2593, 2664, 3134, 3444, 3959, 4868, 4946 |
| TspDTI | 8 | 965, 2028, 2464, 3397, 4612, 1412, 3499, 3802 |
| TspEI | 19 | 559, 570, 574, 656, 728, 820, 1209, 1808, 2171, 2312, 2329, 2404, 3389, 3695, 3950, 4572, 4606, 4709, 4972 |
| TspGWI | 5 | 1580, 4288, 4446, 1481, 3971 |
| TspRI | 26 | 1445, 1474, 2196, 2418, 2527, 3033, 3046, 3314, 3463, 3568, 3915, 3942, 4945, 1443, 1472, 2194, 2416, 2525, 3031, 3044, 3312, 3461, 3566, 3913, 3940, 4943 |
| Tth111I | 2 | 1022, 1466 |
| Tth111II | 6 | 3205, 3241, 1194, 3235, 4533, 4897 |
| VspI | 4 | 571, 2401, 2460, 3692 |
| XhoII | 10 | 947, 2089, 3269, 3280, 3366, 3378, 4146, 4163, 4456, 4819 |
| XmaIII | 3 | 1170, 1335, 1905 |
| XmnI | 2 | 569, 4116 |