| Name | Freq | Positions |
|---|
| AatII | 2 | 1730, 4514 |
| AccI | 4 | 32, 2322, 2329, 4517 |
| AceIII | 4 | 2643, 3883, 1200, 1904 |
| AciI | 52 | 61, 349, 661, 859, 886, 1407, 1419, 1428, 1440, 1450, 1461, 1507, 1722, 2088, 2091, 2393, 2496, 2586, 2748, 2776, 2903, 2922, 3043, 3288, 3659, 3750, 3987, 4152, 4229, 4338, 4484, 625, 741, 765, 814, 828, 831, 1742, 1841, 1893, 1996, 2157, 2552, 2562, 2629, 2636, 2657, 3153, 3297, 3941, 4108, 4437 |
| AclI | 2 | 3821, 4194 |
| AcyI | 5 | 1730, 1949, 2132, 4132, 4514 |
| AflII | 1 | 649 |
| AflIII | 4 | 228, 1618, 2062, 2703 |
| AhaIII | 6 | 533, 546, 655, 3460, 3479, 4171 |
| AlfI | 3 | 1288, 1360, 2025 |
| AloI | 1 | 1079 |
| AluI | 23 | 134, 635, 647, 777, 944, 1201, 1522, 1576, 1586, 1905, 2206, 2339, 2345, 2367, 2462, 2526, 2644, 2870, 3006, 3263, 3784, 3884, 3947 |
| AlwNI | 2 | 75, 3114 |
| ApaBI | 2 | 1298, 1370 |
| ApaLI | 3 | 2033, 3017, 4263 |
| ApoI | 4 | 127, 295, 1215, 2242 |
| AsuI | 12 | 217, 386, 1038, 1755, 1810, 1843, 1849, 1958, 3638, 3717, 3734, 3956 |
| AvaI | 3 | 1580, 1766, 1776 |
| AvaII | 7 | 1755, 1810, 1843, 1849, 3734, 3956, 3638 |
| AvrII | 1 | 1559 |
| BalI | 1 | 1689 |
| BamHI | 1 | 628 |
| BbvI | 13 | 850, 1984, 2204, 3110, 3113, 3319, 4013, 200, 2527, 2608, 2626, 3045, 3647 |
| BbvII | 1 | 714 |
| BccI | 7 | 698, 1041, 1423, 3632, 3756, 4043, 1023 |
| Bce83I | 4 | 3071, 2809, 3348, 4216 |
| BcefI | 4 | 989, 3189, 1706, 1987 |
| BcgI | 1 | 4112 |
| BciVI | 3 | 794, 2912, 4439 |
| BclI | 2 | 665, 1610 |
| BetI | 8 | 1711, 2909, 3056, 3887, 1761, 2017, 3676, 4129 |
| BfiI | 3 | 301, 1443, 3641 |
| BglI | 2 | 1987, 3710 |
| BglII | 1 | 12 |
| BinI | 7 | 4, 628, 1605, 2161, 3344, 3441, 4221 |
| BplI | 1 | 1503 |
| Bpu10I | 1 | 179 |
| BsaAI | 5 | 332, 491, 1030, 1617, 2063 |
| BsaXI | 3 | 1079, 1924, 2556 |
| BseMII | 8 | 39, 2978, 3387, 3553, 109, 760, 1519, 4093 |
| BsePI | 4 | 351, 360, 362, 1724 |
| BseRI | 3 | 283, 1540, 2048 |
| BseSI | 3 | 2033, 3017, 4263 |
| BseYI | 4 | 1352, 732, 778, 3007 |
| BsiI | 2 | 2876, 4260 |
| BsiYI | 16 | 331, 367, 807, 1133, 1278, 1461, 1846, 1872, 1873, 1878, 2152, 2545, 2719, 2737, 2903, 3182 |
| BsmI | 1 | 2272 |
| BsmAI | 2 | 4428, 3663 |
| Bsp24I | 4 | 2132, 3205, 3383, 4508 |
| BspHI | 2 | 3423, 4431 |
| BspLU11I | 1 | 2703 |
| BsrI | 14 | 1116, 3106, 3119, 4067, 74, 302, 1444, 1701, 2503, 3236, 3642, 3760, 3803, 4242 |
| BsrBI | 5 | 886, 2393, 1740, 2634, 4435 |
| BsrDI | 2 | 3650, 3832 |
| BtgZI | 2 | 208, 1042 |
| BtrI | 1 | 1820 |
| BtsI | 4 | 3989, 2268, 2490, 4017 |
| Cac8I | 28 | 120, 317, 351, 360, 362, 693, 724, 728, 870, 884, 927, 1284, 1303, 1356, 1375, 1724, 1960, 1980, 2021, 2031, 2135, 2494, 2523, 2632, 2718, 2755, 3315, 3706 |
| CauII | 12 | 1580, 1581, 1776, 1777, 1813, 1945, 1956, 2017, 2128, 3082, 3778, 4129 |
| CdiI | 5 | 1042, 1635, 3844, 209, 4248 |
| CfrI | 6 | 1689, 1962, 2019, 2043, 2542, 3984 |
| Cfr10I | 7 | 927, 1761, 1802, 1960, 2021, 2135, 3676 |
| CjeI | 11 | 698, 1529, 2730, 3285, 4508, 1326, 1911, 2133, 3206, 3284, 3384 |
| CjePI | 10 | 1701, 3236, 4508, 21, 1982, 2132, 3205, 3383, 3503, 3975 |
| CstMI | 2 | 889, 3949 |
| CviJI | 77 | 72, 134, 150, 218, 387, 431, 635, 647, 670, 696, 747, 755, 777, 783, 930, 944, 1039, 1181, 1201, 1274, 1347, 1470, 1499, 1505, 1522, 1545, 1557, 1563, 1576, 1586, 1690, 1764, 1876, 1895, 1905, 1959, 1963, 1986, 2020, 2044, 2111, 2138, 2206, 2339, 2345, 2367, 2419, 2440, 2462, 2526, 2543, 2625, 2644, 2717, 2728, 2746, 2772, 2870, 3006, 3011, 3036, 3115, 3180, 3191, 3234, 3263, 3626, 3638, 3679, 3705, 3709, 3718, 3784, 3874, 3884, 3947, 3985 |
| CviRI | 20 | 165, 415, 527, 1297, 1306, 1369, 1378, 1493, 1569, 2034, 2203, 2271, 2529, 3018, 3314, 3649, 3739, 3932, 4020, 4264 |
| DdeI | 9 | 39, 109, 180, 760, 1519, 2978, 3387, 3553, 4093 |
| DpnI | 23 | 5, 13, 21, 629, 666, 1606, 1611, 1975, 2146, 2162, 3270, 3345, 3356, 3364, 3442, 3454, 3559, 3900, 3918, 3964, 4222, 4239, 4275 |
| DraII | 1 | 385 |
| DraIII | 3 | 329, 1030, 2036 |
| DrdI | 2 | 1073, 2805 |
| DsaI | 3 | 1466, 1686, 1988 |
| Eam1105I | 1 | 3591 |
| EciI | 8 | 764, 1418, 1439, 1449, 1460, 2775, 2921, 3749 |
| Eco31I | 1 | 3663 |
| Eco57I | 2 | 3230, 4278 |
| Eco57MI | 5 | 2171, 3230, 2150, 3681, 4278 |
| EcoRI | 1 | 295 |
| EcoRII | 18 | 1271, 1280, 1327, 1344, 1846, 1852, 1873, 1878, 1897, 2442, 2730, 2851, 2864, 1580, 1776, 2017, 3082, 4129 |
| FauI | 9 | 885, 1406, 1427, 2495, 625, 831, 1996, 2157, 2552 |
| FnuDII | 27 | 119, 207, 229, 314, 350, 352, 361, 363, 624, 803, 827, 847, 1223, 1723, 1725, 1727, 1840, 1892, 2012, 2156, 2549, 2551, 2749, 3330, 3660, 4153, 4485 |
| Fnu4HI | 25 | 60, 200, 814, 828, 850, 1506, 1893, 1984, 2090, 2204, 2527, 2608, 2626, 2629, 2747, 2902, 3045, 3110, 3113, 3319, 3647, 3986, 4013, 4108, 4337 |
| FokI | 7 | 737, 2142, 959, 1424, 3576, 3757, 4044 |
| FseI | 1 | 1959 |
| GdiII | 5 | 1962, 2019, 2542, 2043, 3984 |
| GsuI | 3 | 2171, 2150, 3681 |
| HaeI | 8 | 1556, 1689, 1875, 2716, 2727, 3179, 1962, 2542 |
| HaeII | 4 | 873, 881, 2577, 2947 |
| HaeIII | 22 | 218, 387, 1039, 1181, 1499, 1505, 1557, 1690, 1876, 1895, 1959, 1963, 2020, 2044, 2543, 2717, 2728, 2746, 3180, 3638, 3718, 3985 |
| HaeIV | 3 | 622, 1625, 3591 |
| HgaI | 7 | 312, 622, 1949, 2132, 2805, 3383, 4133 |
| HgiAI | 10 | 634, 1715, 2033, 3017, 4178, 4263, 804, 874, 882, 4486 |
| HgiCI | 5 | 640, 991, 1858, 2447, 3544 |
| HgiJII | 3 | 634, 746, 782 |
| HhaI | 33 | 118, 198, 315, 351, 353, 360, 362, 364, 804, 817, 826, 848, 874, 882, 1724, 1726, 1839, 1891, 2011, 2155, 2485, 2550, 2578, 2611, 2881, 2948, 3048, 3222, 3331, 3724, 3817, 4154, 4486 |
| Hin4I | 6 | 622, 629, 1625, 3591, 3665, 1925 |
| HindII | 5 | 32, 1622, 1696, 2329, 4517 |
| HindIII | 1 | 646 |
| HinfI | 13 | 35, 173, 241, 401, 1080, 1102, 2081, 2118, 2538, 2603, 2678, 3074, 3591 |
| HpaII | 26 | 928, 1581, 1712, 1737, 1762, 1777, 1803, 1813, 1862, 1945, 1956, 1961, 2018, 2022, 2128, 2136, 2421, 2910, 3057, 3083, 3273, 3677, 3711, 3778, 3888, 4130 |
| HphI | 8 | 1020, 1672, 4070, 4311, 1719, 3447, 3674, 4296 |
| Hpy99I | 16 | 1729, 1732, 1819, 2328, 2804, 3598, 3861, 4516, 4519, 354, 926, 1735, 1801, 1912, 2089, 2134 |
| Hpy178III | 14 | 7, 17, 206, 1528, 1752, 2507, 2936, 3070, 3168, 3266, 3349, 3423, 3682, 4431 |
| Hpy188I | 17 | 54, 631, 759, 973, 1518, 1603, 1608, 1922, 2115, 2815, 2893, 3246, 3380, 3515, 3961, 3972, 4092 |
| KpnI | 1 | 640 |
| Ksp632I | 3 | 2581, 4385, 381 |
| MaeI | 10 | 687, 787, 879, 1560, 2277, 2337, 2341, 3198, 3451, 3786 |
| MaeII | 15 | 333, 492, 497, 921, 1031, 1074, 1086, 1618, 1731, 1821, 2064, 3406, 3822, 4195, 4515 |
| MaeIII | 16 | 335, 345, 494, 573, 843, 855, 1823, 2217, 3060, 3123, 3239, 3522, 3853, 3911, 4064, 4252 |
| MboI | 23 | 5, 13, 21, 629, 666, 1606, 1611, 1975, 2146, 2162, 3270, 3345, 3356, 3364, 3442, 3454, 3559, 3900, 3918, 3964, 4222, 4239, 4275 |
| MboII | 11 | 170, 381, 714, 3353, 901, 2178, 2582, 3444, 4199, 4277, 4386 |
| McrI | 7 | 1743, 1759, 2019, 2616, 3040, 3963, 4112 |
| MfeI | 1 | 161 |
| MluI | 1 | 228 |
| MmeI | 5 | 2893, 3077, 98, 1076, 1921 |
| MnlI | 30 | 271, 672, 995, 1510, 1516, 1953, 2149, 2334, 2592, 2875, 3753, 3959, 102, 283, 384, 762, 1497, 1503, 1540, 1543, 1555, 1675, 1790, 1925, 2048, 2559, 2818, 3142, 3542, 3623 |
| MseI | 25 | 69, 131, 234, 454, 534, 547, 650, 656, 822, 1093, 1191, 1208, 1219, 1229, 1630, 2474, 2533, 3409, 3461, 3466, 3480, 3533, 3768, 3807, 4172 |
| MslI | 3 | 3844, 4003, 4362 |
| MstI | 1 | 3816 |
| MwoI | 26 | 191, 351, 353, 355, 732, 756, 817, 819, 861, 888, 918, 1275, 1298, 1370, 1421, 1500, 1506, 1717, 1987, 2441, 2485, 2569, 2636, 2750, 3322, 3710 |
| NaeI | 4 | 927, 1960, 2021, 2135 |
| NcoI | 2 | 1466, 1686 |
| NdeI | 1 | 561 |
| NlaIII | 19 | 167, 292, 398, 729, 1304, 1376, 1467, 1687, 1966, 2167, 2315, 2358, 2704, 3424, 3915, 3925, 4003, 4039, 4432 |
| NlaIV | 15 | 628, 640, 970, 991, 1274, 1347, 1858, 2447, 2733, 2772, 3544, 3638, 3679, 3890, 4480 |
| NruI | 1 | 206 |
| NspI | 4 | 728, 1303, 1375, 2703 |
| NspBII | 6 | 661, 776, 2525, 3043, 3288, 4229 |
| PfoI | 4 | 1812, 1845, 1944, 2127 |
| PleI | 7 | 1080, 3074, 35, 241, 1102, 2603, 3591 |
| PmaCI | 3 | 332, 1617, 2063 |
| PmeI | 1 | 654 |
| PpiI | 3 | 3394, 1080, 4237 |
| PsiI | 2 | 1158, 2209 |
| PvuI | 1 | 3963 |
| PvuII | 2 | 776, 2525 |
| RleAI | 1 | 1884 |
| RsaI | 6 | 43, 213, 483, 641, 1909, 4075 |
| SacI | 1 | 634 |
| SalI | 3 | 32, 2329, 4517 |
| SapI | 1 | 2580 |
| ScaI | 1 | 4074 |
| ScrFI | 25 | 1271, 1280, 1327, 1344, 1580, 1581, 1776, 1777, 1813, 1846, 1852, 1873, 1878, 1897, 1945, 1956, 2017, 2128, 2442, 2730, 2851, 2864, 3082, 3778, 4129 |
| SduI | 8 | 634, 746, 782, 1715, 2033, 3017, 4178, 4263 |
| SecI | 16 | 367, 1270, 1279, 1343, 1466, 1501, 1559, 1580, 1686, 1776, 1872, 1878, 1988, 2046, 2442, 2863 |
| SexAI | 3 | 1326, 1851, 3081 |
| SfaNI | 10 | 958, 1307, 1379, 2235, 2791, 3843, 4283, 57, 738, 4053 |
| SfeI | 5 | 247, 809, 2968, 3159, 3837 |
| SgrAI | 1 | 1801 |
| SimI | 6 | 3377, 999, 1825, 2015, 2896, 3665 |
| SmaI | 2 | 1580, 1776 |
| SmlI | 5 | 649, 2809, 3071, 3348, 4216 |
| SphI | 3 | 728, 1303, 1375 |
| SspI | 1 | 4398 |
| Sth132I | 38 | 18, 885, 937, 1406, 1427, 1580, 1776, 2017, 2495, 2830, 3029, 3038, 3082, 3596, 4129, 4497, 216, 374, 626, 832, 954, 1582, 1768, 1778, 1814, 1946, 1957, 1997, 2129, 2158, 2508, 2553, 2937, 3375, 3620, 3779, 4142, 4203 |
| StuI | 1 | 1556 |
| StyI | 7 | 367, 1466, 1559, 1686, 1270, 1279, 1343 |
| TaqI | 10 | 33, 589, 674, 997, 1746, 2079, 2330, 2803, 4247, 4518 |
| TatI | 3 | 42, 482, 4074 |
| TauI | 12 | 60, 814, 828, 1506, 1893, 2090, 2629, 2747, 2902, 3986, 4108, 4337 |
| TfiI | 11 | 173, 401, 2081, 2118, 2538, 2678, 35, 241, 1102, 2603, 3591 |
| TseI | 20 | 200, 850, 1984, 2204, 2527, 2608, 2626, 3045, 3110, 3113, 3319, 3647, 4013, 60, 1506, 2090, 2747, 2902, 3986, 4337 |
| Tsp45I | 7 | 335, 345, 494, 855, 1823, 3853, 4064 |
| Tsp4CI | 10 | 462, 570, 677, 1056, 2326, 2665, 2736, 3206, 3519, 4034 |
| TspDTI | 9 | 168, 293, 2100, 2536, 3472, 407, 1832, 3574, 3877 |
| TspEI | 23 | 128, 162, 265, 296, 446, 452, 456, 511, 538, 1216, 1227, 1231, 1314, 1386, 1478, 1628, 2243, 2384, 2401, 2476, 3464, 3770, 4025 |
| TspGWI | 3 | 2, 338, 4363 |
| TspRI | 24 | 303, 1702, 2268, 2490, 2599, 3105, 3118, 3389, 3538, 3643, 3990, 4017, 301, 1700, 2266, 2488, 2597, 3103, 3116, 3387, 3536, 3641, 3988, 4015 |
| Tth111II | 4 | 3277, 3316, 89, 3310 |
| VspI | 6 | 453, 1228, 1629, 2473, 2532, 3767 |
| XhoII | 10 | 12, 628, 1605, 2161, 3344, 3355, 3441, 3453, 4221, 4238 |
| XmaIII | 1 | 2019 |
| XmnI | 2 | 1226, 4191 |