| Name | Freq | Positions |
|---|
| AatII | 7 | 121, 174, 257, 443, 1640, 2138, 4675 |
| AccI | 4 | 1706, 2486, 2493, 4678 |
| AceIII | 5 | 2807, 4044, 564, 1213, 1739 |
| AciI | 83 | 58, 86, 98, 112, 279, 507, 620, 705, 872, 899, 1419, 1431, 1440, 1452, 1462, 1473, 1519, 1633, 1646, 1668, 1671, 1689, 1717, 1809, 1874, 1908, 1940, 1959, 2067, 2085, 2092, 2133, 2159, 2179, 2252, 2255, 2557, 2660, 2750, 2912, 2940, 3067, 3086, 3207, 3452, 3820, 3911, 4148, 4313, 4390, 4499, 4645, 4741, 370, 403, 528, 701, 754, 778, 827, 841, 844, 1648, 1729, 1796, 1811, 1817, 1847, 1853, 1893, 2045, 2113, 2321, 2716, 2726, 2793, 2800, 2821, 3317, 3461, 4102, 4269, 4598 |
| AclI | 2 | 3982, 4355 |
| AcyI | 13 | 121, 174, 257, 443, 1640, 1805, 1936, 1982, 2138, 2217, 2296, 4293, 4675 |
| AflIII | 2 | 2867, 4908 |
| AhaIII | 3 | 3621, 3640, 4332 |
| AlfI | 2 | 1300, 1372 |
| AloI | 2 | 577, 1092 |
| AluI | 23 | 565, 647, 790, 957, 1214, 1534, 1588, 1740, 2370, 2503, 2509, 2531, 2626, 2690, 2808, 3034, 3124, 3170, 3427, 3945, 4045, 4108, 4814 |
| AlwNI | 2 | 3278, 4755 |
| ApaBI | 3 | 1310, 1382, 2163 |
| ApaLI | 3 | 3181, 4424, 4712 |
| ApoI | 3 | 1228, 2406, 4807 |
| AsuI | 14 | 83, 276, 1051, 1650, 1714, 1824, 1871, 1947, 2156, 3799, 3878, 3895, 4117, 4897 |
| AsuII | 1 | 2198 |
| AvaI | 1 | 1592 |
| AvaII | 10 | 1714, 1824, 2156, 3895, 4117, 83, 276, 1871, 1947, 3799 |
| AvrII | 1 | 1571 |
| BalI | 1 | 1971 |
| BamHI | 1 | 584 |
| BbvI | 15 | 863, 1912, 2016, 2368, 3274, 3277, 3480, 4174, 1741, 2691, 2772, 2790, 3209, 3808, 4880 |
| BbvII | 1 | 727 |
| BccI | 8 | 1054, 1435, 2230, 3793, 3917, 4204, 1036, 1921 |
| Bce83I | 4 | 3235, 2973, 3509, 4377 |
| BcefI | 5 | 1002, 1803, 3353, 1652, 2021 |
| BcgI | 2 | 4273, 2016 |
| BciVI | 3 | 807, 3076, 4600 |
| BetI | 9 | 3073, 3220, 4048, 1711, 1899, 1944, 2033, 3837, 4290 |
| BfiI | 3 | 294, 1455, 3802 |
| BglI | 6 | 84, 206, 277, 1808, 1939, 3871 |
| BglII | 1 | 4692 |
| BinI | 16 | 584, 658, 676, 2325, 3505, 3602, 4382, 4684, 585, 2310, 3434, 3517, 3615, 4079, 4400, 4701 |
| BplI | 1 | 1515 |
| Bpu10I | 1 | 4859 |
| BsaAI | 2 | 338, 1043 |
| BsaXI | 3 | 1092, 1954, 2720 |
| BseMII | 8 | 3142, 3548, 3714, 4719, 773, 1531, 4254, 4789 |
| BsePI | 1 | 2053 |
| BseRI | 1 | 1552 |
| BseSI | 5 | 2063, 2147, 3181, 4424, 4712 |
| BseYI | 5 | 1292, 1364, 745, 791, 3171 |
| BsiI | 3 | 2234, 3040, 4421 |
| BsiYI | 14 | 43, 820, 1146, 1473, 1873, 1945, 1999, 2032, 2316, 2709, 2883, 2901, 3067, 3346 |
| BsmI | 1 | 2436 |
| BsmAI | 5 | 429, 1985, 4589, 2078, 3824 |
| Bsp24I | 4 | 266, 2296, 3544, 4669 |
| BspHI | 2 | 3584, 4592 |
| BspLU11I | 1 | 2867 |
| BspMI | 1 | 2225 |
| BsrI | 13 | 1129, 3270, 3283, 4228, 295, 1456, 2667, 3400, 3803, 3921, 3964, 4403, 4754 |
| BsrBI | 7 | 899, 2557, 1727, 1891, 2111, 2798, 4596 |
| BsrDI | 2 | 3811, 3993 |
| BstEII | 1 | 1732 |
| BtgZI | 3 | 4888, 349, 1055 |
| BtsI | 4 | 4150, 2432, 2654, 4178 |
| Cac8I | 27 | 84, 277, 737, 741, 883, 897, 940, 1296, 1315, 1368, 1387, 1648, 1872, 1903, 1957, 2053, 2065, 2181, 2299, 2658, 2687, 2796, 2882, 2919, 3476, 3867, 4800 |
| CauII | 11 | 1592, 1593, 1711, 1899, 2033, 2058, 2186, 2292, 3246, 3939, 4290 |
| CdiI | 7 | 349, 1055, 1723, 1777, 4005, 4409, 4889 |
| CfrI | 7 | 702, 1881, 1905, 1971, 2046, 2706, 4145 |
| Cfr10I | 4 | 940, 1944, 2299, 3837 |
| CjeI | 11 | 1541, 2894, 3449, 4669, 74, 267, 1338, 2297, 3370, 3448, 3545 |
| CjePI | 11 | 623, 3400, 4669, 266, 601, 1955, 2296, 3544, 3664, 4136, 4701 |
| CspCI | 1 | 388 |
| CstMI | 3 | 1952, 902, 4110 |
| CviJI | 85 | 41, 83, 92, 276, 565, 647, 703, 760, 768, 790, 796, 943, 957, 971, 1052, 1194, 1214, 1287, 1359, 1482, 1511, 1517, 1534, 1557, 1569, 1575, 1588, 1611, 1651, 1740, 1770, 1871, 1882, 1902, 1906, 1928, 1947, 1956, 1972, 2047, 2115, 2120, 2184, 2275, 2302, 2370, 2503, 2509, 2531, 2583, 2604, 2626, 2690, 2707, 2789, 2808, 2881, 2892, 2910, 2936, 3034, 3124, 3170, 3175, 3200, 3279, 3344, 3355, 3398, 3427, 3787, 3799, 3840, 3866, 3870, 3879, 3945, 4035, 4045, 4108, 4146, 4752, 4814, 4830, 4898 |
| CviRI | 20 | 1309, 1318, 1381, 1390, 1505, 1581, 1743, 2171, 2367, 2435, 2693, 3182, 3475, 3810, 3900, 4093, 4181, 4425, 4713, 4845 |
| DdeI | 9 | 773, 1531, 3142, 3548, 3714, 4254, 4719, 4789, 4860 |
| DpnI | 22 | 585, 659, 677, 1867, 2310, 2326, 3434, 3506, 3517, 3525, 3603, 3615, 3720, 4061, 4079, 4125, 4383, 4400, 4436, 4685, 4693, 4701 |
| DraIII | 2 | 1043, 2164 |
| DrdI | 2 | 1086, 2969 |
| DsaI | 6 | 360, 580, 1478, 1614, 1646, 1809 |
| Eam1105I | 1 | 3752 |
| EciI | 10 | 777, 506, 619, 1430, 1451, 1461, 1472, 2939, 3085, 3910 |
| Eco31I | 2 | 2078, 3824 |
| Eco57I | 2 | 3394, 4439 |
| Eco57MI | 6 | 2075, 2335, 3394, 2314, 3842, 4439 |
| EcoRII | 21 | 89, 282, 1284, 1339, 1356, 1933, 1969, 1999, 2074, 2166, 2606, 2894, 3015, 3028, 1592, 1711, 1899, 2033, 2186, 3246, 4290 |
| EcoRV | 1 | 615 |
| Esp3I | 1 | 1984 |
| FauI | 21 | 85, 111, 278, 898, 1418, 1439, 1632, 1645, 1688, 1873, 1958, 2066, 2091, 2178, 2659, 844, 1648, 1729, 1847, 2321, 2716 |
| FnuDII | 30 | 59, 816, 840, 860, 1236, 1634, 1647, 1672, 1695, 1761, 1763, 1795, 1810, 1875, 1909, 1960, 2054, 2086, 2160, 2320, 2713, 2715, 2913, 3491, 3821, 4314, 4646, 4799, 4887, 4909 |
| Fnu4HI | 35 | 701, 704, 827, 841, 863, 1518, 1667, 1670, 1741, 1808, 1907, 1912, 1939, 2016, 2045, 2113, 2254, 2368, 2691, 2772, 2790, 2793, 2911, 3066, 3209, 3274, 3277, 3480, 3808, 4147, 4174, 4269, 4498, 4740, 4880 |
| FokI | 7 | 750, 1596, 2306, 1436, 3737, 3918, 4205 |
| GdiII | 6 | 702, 2046, 2706, 1881, 1905, 4145 |
| GsuI | 4 | 2075, 2335, 2314, 3842 |
| HaeI | 9 | 1568, 1927, 1971, 2880, 2891, 3343, 1870, 1946, 2706 |
| HaeII | 7 | 886, 894, 1805, 1936, 2018, 2741, 3111 |
| HaeIII | 25 | 83, 276, 703, 1052, 1194, 1511, 1517, 1569, 1651, 1871, 1882, 1906, 1928, 1947, 1972, 2047, 2707, 2881, 2892, 2910, 3344, 3799, 3879, 4146, 4898 |
| HaeIV | 1 | 3752 |
| HgaI | 9 | 517, 2217, 2296, 2969, 3544, 1764, 1839, 1983, 4294 |
| HgiAI | 12 | 2027, 3181, 4339, 4424, 4712, 817, 887, 895, 1955, 2087, 2161, 4647 |
| HgiCI | 9 | 465, 1004, 1805, 1936, 2062, 2146, 2189, 2611, 3705 |
| HgiJII | 5 | 759, 795, 970, 1769, 1955 |
| HhaI | 34 | 817, 830, 839, 861, 887, 895, 1621, 1696, 1762, 1806, 1876, 1910, 1937, 2019, 2053, 2055, 2087, 2161, 2319, 2649, 2714, 2742, 2775, 3045, 3112, 3212, 3386, 3492, 3885, 3978, 4315, 4647, 4798, 4878 |
| Hin4I | 2 | 3752, 3826 |
| HindII | 4 | 1706, 2493, 4678, 4912 |
| HindIII | 1 | 646 |
| HinfI | 14 | 410, 601, 630, 1093, 1115, 2196, 2245, 2282, 2702, 2767, 2842, 3238, 3752, 4853 |
| HpaII | 21 | 941, 1593, 1712, 1832, 1900, 1945, 2034, 2058, 2187, 2292, 2300, 2585, 3074, 3221, 3247, 3437, 3838, 3872, 3939, 4049, 4291 |
| HphI | 10 | 364, 1033, 4231, 4472, 1734, 2124, 2130, 3608, 3835, 4457 |
| Hpy99I | 32 | 590, 641, 1636, 1639, 1705, 1765, 1801, 1840, 1978, 2023, 2137, 2140, 2216, 2492, 2968, 3759, 4022, 4677, 4680, 939, 1666, 1669, 1678, 1807, 1830, 1861, 1938, 2020, 2056, 2134, 2253, 2298 |
| Hpy178III | 16 | 723, 1540, 1821, 2233, 2671, 3100, 3234, 3332, 3430, 3510, 3584, 3843, 4592, 4687, 4697, 4886 |
| Hpy188I | 15 | 604, 627, 772, 986, 1530, 2279, 2979, 3057, 3410, 3541, 3676, 4122, 4133, 4253, 4734 |
| Ksp632I | 3 | 1751, 2745, 4546 |
| MaeI | 11 | 724, 800, 892, 1572, 2441, 2501, 2505, 3362, 3612, 3947, 4930 |
| MaeII | 16 | 122, 134, 175, 258, 339, 444, 934, 1044, 1087, 1099, 1641, 2139, 3567, 3983, 4356, 4676 |
| MaeIII | 16 | 62, 149, 498, 856, 868, 1733, 2129, 2381, 3224, 3287, 3403, 3683, 4014, 4072, 4225, 4413 |
| MboI | 22 | 585, 659, 677, 1867, 2310, 2326, 3434, 3506, 3517, 3525, 3603, 3615, 3720, 4061, 4079, 4125, 4383, 4400, 4436, 4685, 4693, 4701 |
| MboII | 12 | 727, 3365, 3514, 4850, 914, 1752, 2342, 2746, 3605, 4360, 4438, 4547 |
| McrI | 6 | 702, 2046, 2780, 3204, 4124, 4273 |
| MfeI | 1 | 4841 |
| MluI | 1 | 4908 |
| MmeI | 4 | 3057, 3241, 1089, 4778 |
| MnlI | 31 | 709, 1008, 1522, 1528, 1624, 1663, 1756, 1930, 2082, 2098, 2313, 2498, 2756, 3039, 3914, 4120, 548, 775, 1509, 1515, 1552, 1555, 1567, 2042, 2144, 2723, 2982, 3306, 3703, 3784, 4782 |
| MseI | 20 | 7, 650, 835, 1106, 1204, 1221, 1232, 1242, 2638, 2697, 3570, 3622, 3627, 3641, 3694, 3929, 3968, 4333, 4749, 4811 |
| MslI | 4 | 361, 4005, 4164, 4523 |
| MstI | 1 | 3977 |
| MwoI | 38 | 84, 206, 238, 277, 370, 394, 745, 769, 830, 832, 874, 901, 931, 1310, 1382, 1433, 1512, 1518, 1612, 1670, 1762, 1808, 1853, 1903, 1939, 1948, 2048, 2163, 2172, 2220, 2605, 2649, 2733, 2800, 2914, 3483, 3871, 4871 |
| NaeI | 2 | 940, 2299 |
| NarI | 2 | 1805, 1936 |
| NcoI | 2 | 360, 1478 |
| NdeI | 1 | 233 |
| NlaIII | 19 | 301, 361, 742, 1316, 1388, 1479, 1879, 2173, 2331, 2479, 2522, 2868, 3585, 4076, 4086, 4164, 4200, 4593, 4847 |
| NlaIV | 23 | 465, 584, 971, 983, 1004, 1287, 1359, 1805, 1895, 1936, 1954, 1965, 2062, 2146, 2189, 2611, 2897, 2936, 3705, 3799, 3840, 4051, 4641 |
| NotI | 1 | 701 |
| NruI | 1 | 4886 |
| NspI | 4 | 741, 1315, 1387, 2867 |
| NspBII | 7 | 789, 1646, 1809, 2689, 3207, 3452, 4390 |
| PfoI | 2 | 2073, 2291 |
| PleI | 6 | 1093, 3238, 410, 1115, 2767, 3752 |
| PpiI | 4 | 1748, 3555, 1093, 4398 |
| PsiI | 2 | 1171, 2373 |
| PvuI | 1 | 4124 |
| PvuII | 2 | 789, 2689 |
| RleAI | 1 | 1788 |
| RsaI | 11 | 218, 243, 298, 331, 382, 539, 1606, 1655, 4236, 4723, 4893 |
| RsrII | 2 | 1713, 1870 |
| SacII | 2 | 1646, 1809 |
| SalI | 3 | 1706, 2493, 4678 |
| SapI | 1 | 2744 |
| ScaI | 1 | 4235 |
| ScrFI | 25 | 89, 282, 1284, 1339, 1356, 1592, 1593, 1711, 1899, 1933, 1969, 1999, 2033, 2058, 2074, 2166, 2186, 2292, 2606, 2894, 3015, 3028, 3246, 3939, 4290 |
| SduI | 12 | 759, 795, 970, 1769, 1955, 2027, 2063, 2147, 3181, 4339, 4424, 4712 |
| SecI | 17 | 360, 580, 1283, 1355, 1478, 1513, 1571, 1592, 1614, 1646, 1809, 1950, 1999, 2032, 2058, 2606, 3027 |
| SexAI | 3 | 1338, 2165, 3245 |
| SfaNI | 10 | 1319, 1391, 2399, 2955, 4004, 4444, 367, 751, 4214, 4737 |
| SfeI | 4 | 822, 3132, 3323, 3998 |
| SimI | 11 | 26, 1731, 1791, 2008, 3538, 107, 1012, 1709, 2176, 3060, 3826 |
| SmaI | 1 | 1592 |
| SmlI | 4 | 2973, 3235, 3509, 4377 |
| SnaBI | 1 | 338 |
| SpeI | 1 | 4929 |
| SphI | 3 | 741, 1315, 1387 |
| SplI | 1 | 1654 |
| SspI | 1 | 4559 |
| Sth132I | 55 | 85, 111, 278, 588, 898, 950, 1418, 1439, 1592, 1632, 1645, 1688, 1711, 1873, 1899, 1958, 1991, 2033, 2066, 2091, 2150, 2178, 2186, 2659, 2994, 3193, 3202, 3246, 3757, 4290, 4658, 4698, 24, 416, 479, 845, 967, 1594, 1649, 1730, 1768, 1848, 2059, 2293, 2322, 2672, 2717, 3101, 3536, 3781, 3940, 4303, 4364, 4688, 4896 |
| StuI | 2 | 1568, 1927 |
| StyI | 8 | 360, 1478, 1571, 1950, 1283, 1355, 1614, 2032 |
| TaqI | 13 | 711, 1010, 1707, 1725, 1773, 1842, 2142, 2199, 2243, 2494, 2967, 4408, 4679 |
| TatI | 7 | 217, 297, 330, 381, 1605, 4235, 4722 |
| TauI | 20 | 701, 704, 827, 841, 1518, 1667, 1670, 1808, 1907, 1939, 2045, 2113, 2254, 2793, 2911, 3066, 4147, 4269, 4498, 4740 |
| TfiI | 12 | 601, 630, 2196, 2245, 2282, 2702, 2842, 4853, 410, 1115, 2767, 3752 |
| TseI | 28 | 863, 1741, 1912, 2016, 2368, 2691, 2772, 2790, 3209, 3274, 3277, 3480, 3808, 4174, 4880, 704, 1518, 1667, 1670, 1808, 1907, 1939, 2254, 2911, 3066, 4147, 4498, 4740 |
| Tsp45I | 5 | 868, 1733, 2129, 4014, 4225 |
| Tsp4CI | 17 | 74, 196, 267, 541, 579, 714, 1069, 1616, 1703, 1976, 2126, 2490, 2829, 2900, 3370, 3680, 4195 |
| TspDTI | 8 | 2264, 2700, 3633, 4848, 36, 670, 3735, 4038 |
| TspEI | 16 | 19, 1229, 1240, 1244, 1326, 1398, 1490, 2407, 2548, 2565, 2640, 3625, 3931, 4186, 4808, 4842 |
| TspGWI | 3 | 4524, 4682, 4207 |
| TspRI | 20 | 2432, 2654, 2763, 3269, 3282, 3550, 3699, 3804, 4151, 4178, 2430, 2652, 2761, 3267, 3280, 3548, 3697, 3802, 4149, 4176 |
| Tth111I | 1 | 1637 |
| Tth111II | 4 | 3441, 3477, 3471, 4769 |
| VspI | 5 | 6, 1241, 2637, 2696, 3928 |
| XbaI | 1 | 723 |
| XhoII | 11 | 584, 658, 676, 2325, 3505, 3516, 3602, 3614, 4382, 4399, 4692 |
| XmaIII | 2 | 702, 2046 |
| XmnI | 2 | 1239, 4352 |