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pkp3a cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol pkp3a
Entrez Gene ID 368397
Full Name plakophilin 3a
Synonyms pkp3,wu:fa97f09,wu:fk69a12,zgc:136656
General protein information
Preferred Names

plakophilin 3a

Names

plakophilin-3
plakophilin 3
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_005170678.1 XP_005170735.1 plakophilin-3 isoform X2
XM_009298029.1 XP_009296304.1 plakophilin-3 isoform X1
NM_001045280.1 NP_001038745.1 plakophilin-3

Pathways from BioSystems


Homologies


Bos taurus (cattle) PKP3 NP_001070326.1
Mus musculus (house mouse) Pkp3 NP_062736.2
Danio rerio (zebrafish) LOC100330353 XP_002662884.1
Xenopus tropicalis (tropical clawed frog) pkp3 XP_004913458.1
Danio rerio (zebrafish) pkp3a NP_001038745.1
LOC720779 XP_002808101.1
Canis lupus familiaris (dog) PKP3 XP_005631764.1
Gallus gallus (chicken) PKP3 XP_003641337.1
Homo sapiens (human) PKP3 NP_009114.1
Rattus norvegicus (Norway rat) Pkp3 NP_001099785.1

Gene Ontology


Bibliography

Related articles in PubMed

Proteolysis regulates cardiomyocyte maturation and tissue integration.
Fukuda R, Gunawan F, Beisaw A, Jimenez-Amilburu V, Maischein HM, Kostin S, Kawakami K, Stainier DY
Nature communications814495(2017 Feb)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Unilateral dampening of Bmp activity by nodal generates cardiac left-right asymmetry.
Veerkamp J, Rudolph F, Cseresnyes Z, Priller F, Otten C, Renz M, Schaefer L, Abdelilah-Seyfried S
Developmental cell24(6)660-7(2013 Mar)

Interferon regulatory factor 6 promotes differentiation of the periderm by activating expression of Grainyhead-like 3.
de la Garza G, Schleiffarth JR, Dunnwald M, Mankad A, Weirather JL, Bonde G, Butcher S, Mansour TA, Kousa YA, Fukazawa CF, Houston DW, Manak JR, Schutte BC, Wagner DS, Cornell RA
The Journal of investigative dermatology133(1)68-77(2013 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following pkp3a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the pkp3a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa05254 NM_001045280.1
Latest version!		 Danio rerio plakophilin 3a (pkp3a), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 12-14 $510.30
$729.00
ODa29442 XM_005170678.1
Latest version!		 Danio rerio plakophilin 3a (pkp3a), transcript variant X2, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 12-14 $426.30
$609.00
ODa40185 XM_009298029.1
Latest version!		 Danio rerio plakophilin 3a (pkp3a), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 12-14 $510.30
$729.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa05254
Clone ID Related Accession (Same CDS sequence) NM_001045280.1
Accession Version NM_001045280.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 2610bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-03-07
Organism Danio rerio(zebrafish)
Product plakophilin-3
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC116608.1. On Apr 17, 2008 this sequence version replaced XM_679912.2. ##Evidence-Data-START## Transcript exon combination :: BC116608.1, BC155136.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
ATGAGCACGA GTGTGACTTC GGAGAGCGTC TTTCTCTCGG CGCTGCAGCC CAACTCTACC 
GTCAGCACGT ACGCGGTCCC GTCCGAGAAC GAGCTCGGGT CGCACAAGGA GGAATCCAGA 
TTTAAGCGCA TGCAACAGCA GGTGTCCATG AGACTAGCGG AGAAATCCAC GCTCCCGCGC 
CAGAACGGCT CTTCGTCACA ATACGCGTCC TCAGAGTCTG GTAATTATTC AACAATGACA 
AAATATTCAA CAGTGGGACA AAACTTTATC CCGAGTTTCA GCTCGAAATC TTTTGTCAAC 
TCGTCTGGCC GACAAATGAT GGCCCAGCGT CCATCCCAGT ACTTGAGCGG TGGTTTCTCT 
TCCCGCTCTG CCGTTGAGTT CACCCCAAGA GCCAAAATGA GTTACACAGC AGGAGGAGGT 
GGTGGTGGCG GTAGCTCATA TTACCAAGAA GATTTTGCTA GCGGTGACTA TGGTGGTGGC 
GGGTATCAGA GTGGCGGTTA TCAAATTAGT GGCGGCCAAG TTCAACAGCA GCAGGTCAAC 
AAAGTGACCC GTTCCCTGAG CCGAATGGGG GGTGACCCAG AGACCTTATC CATGCACTCC 
ATGCGCGTGT CAGCCATACC ACAGCAGGTT GTTTCTTCTT GGGTGGCTCA GGAAGACAGC 
GATGGCAGCA TGGTTTCAGA ACGCGACGCT ACTTATACAC AGCGGAGCAT GAGCAATGGC 
TACGCCGCCA ACACTTACCC ACGCCAGTCC ATGTACTCCA ACTCAAATAT GAATGGATTT 
GAAAGTGCGC AGCAGCAGGT CAGCTCCATG ACTCTGCCGA CCATGAAACG CTCCCTCAGT 
GGGACGCTTG CTACAAGCAG TGGAGGAGGA GGAGGAGGTG CTGTGGAGCA GGAGGTGTAT 
GTGAGCCGAC AGTCCTTCAA AGGCCCAGCT CATCGCACCA TCAGCCGCAT TAACAATCGG 
CAAACCCTTC GGACGTCCAG TGTGCAGTCT GGCATGTTCG GAAGTGGCGG GGGATTCAGC 
GGCTCCCAGG GGAACCTGTA CATGATGCAG CAGGGGAGGC TGTCGCGTGC TGGCTCCGTC 
AGGAGCATCC ATAGTGTTGG GAGAGGCAAG GACGTGTTCG ATGGCATGGA CATGGCTGGC 
AGCATGGGCA ATCTGAGTGG ACTCAACAGT TTGGACATGC CTACTGCCAT CAACTATCTT 
GACCAGTCCG ATCAGGAACT TCAGATGTTG GGCGCCGCCT ACGTTCAGCA TGAGTGTTAC 
AGTAACAAAG ATGCCAAAAA ACAGGTGAAC CAGTTGAAGG GAATTCCTCG ACTGGTGCAG 
CTTTTCAACA GTGACAACCA AGAGGTGCAG CGCTTTGCAA CCGGTGCCAC AAGAAACCTC 
ATCTACGAGA ATATGGAGAA CAAAGTGGCT CTTATTGAAG CTGGCGGGAT TCCCAAACTC 
ATACAGGCAC TGAAAGTAGA AGATGATGAG TTACACAAAA ACATTACAGG TATCCTCTGG 
AATTTGTCCT CTAAGGATAA TCTGAAAGAA AGGCTGGCAC GAGAAATTCT TCCTGAATTG 
ACAGACAAGA TTTTGATTCC CCTCTCCGGA ACCGGAGACC AGGACATCAT TGAGATGAAC 
CCCTCAGAGT CTGACATCTT CTTCAACACT ACTGGCTGTC TCAGGAACAT GAGCTCTGTA 
AATGAGAAGA CCAGACAACT GATGAGAGAA ACCAAAGGCC TCATAGACGC TCTGGTCGGC 
TACATTCAGA AATGTGTGGT GGACAGTAAA GTGGAAGAGA AGGGTGTGGA GAACTGTGTG 
TGTGTGTTAA GGAATCTGTC CTATCAGGTG TACAACGAGA TCCCCCCCTC TATAGCCTCA 
CGTCTAGATG GTCCGCGTCG TGCTCAGAGC TCTTCAAAAG CAGAACCCAT CGGCTGCTTC 
ACTCCTAACA GCAAGAAAGC CAAAGAAAGA AAAAATCAGG ACCTCACCAC ATTTACAGAA 
GTTTCACGGA CACCCAAAGA CATCGAGTGG CTCTGGCACC CAAAGATAAT TGAGTTGTAT 
AATCAGGTGC TCACGCGCTG TGAGATCAAC TCCACCACAC GAGAGGCTGC GGCCGGAGCC 
TTGCAGAACA TCACTGCTGG AGACAAGAGG TGGGCGTCCA TCTTGAGTCT TGTGGCATTG 
GAGCAGAATA GGATGCTTCC TGTTATTCTG GATCTCCTCA AAACCGACAA GGATCTGGAG 
CTCCGTTCTC TCACCGGCTT TCTCAGAAAC CTCTCTCGTC ACACCAAAGA CAAGAATGAC 
ATGGCTACTA AGGTGGTAAA TACATTGGTG CTTAAACTGC CCGCTGATGG CCGTCAGAAG 
CAGCCGTCCA GCGACGTCGT AGTGAACATT TGTGGAGCTT TAAACAACCT GGTGACCGGC 
AGCATGTTGG CCGCACGAGA CATCACTTAC TTTGATGGTC TGCGCAAGCT ATTTGAGATT 
AAAAACAACC ATGACAACAG CCCCGACAAA CTGAAAGCTG CCAAAGCAGC AGTAACAGTT 
CTAAGCAACA TGTTCCAGTA CAAGAAATTA CACAAAGACT ACAAAGAGAA AGGATTCGAG 
AAGGAAGCCT TCTTAGACAT GACCTTCTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001038745.1
CDS116..2725
Translation

Target ORF information:

RefSeq Version NM_001045280.1
Organism Danio rerio(zebrafish)
Definition Danio rerio plakophilin 3a (pkp3a), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001045280.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
ATGAGCACGA GTGTGACTTC GGAGAGCGTC TTTCTCTCGG CGCTGCAGCC CAACTCTACC 
GTCAGCACGT ACGCGGTCCC GTCCGAGAAC GAGCTCGGGT CGCACAAGGA GGAATCCAGA 
TTTAAGCGCA TGCAACAGCA GGTGTCCATG AGACTAGCGG AGAAATCCAC GCTCCCGCGC 
CAGAACGGCT CTTCGTCACA ATACGCGTCC TCAGAGTCTG GTAATTATTC AACAATGACA 
AAATATTCAA CAGTGGGACA AAACTTTATC CCGAGTTTCA GCTCGAAATC TTTTGTCAAC 
TCGTCTGGCC GACAAATGAT GGCCCAGCGT CCATCCCAGT ACTTGAGCGG TGGTTTCTCT 
TCCCGCTCTG CCGTTGAGTT CACCCCAAGA GCCAAAATGA GTTACACAGC AGGAGGAGGT 
GGTGGTGGCG GTAGCTCATA TTACCAAGAA GATTTTGCTA GCGGTGACTA TGGTGGTGGC 
GGGTATCAGA GTGGCGGTTA TCAAATTAGT GGCGGCCAAG TTCAACAGCA GCAGGTCAAC 
AAAGTGACCC GTTCCCTGAG CCGAATGGGG GGTGACCCAG AGACCTTATC CATGCACTCC 
ATGCGCGTGT CAGCCATACC ACAGCAGGTT GTTTCTTCTT GGGTGGCTCA GGAAGACAGC 
GATGGCAGCA TGGTTTCAGA ACGCGACGCT ACTTATACAC AGCGGAGCAT GAGCAATGGC 
TACGCCGCCA ACACTTACCC ACGCCAGTCC ATGTACTCCA ACTCAAATAT GAATGGATTT 
GAAAGTGCGC AGCAGCAGGT CAGCTCCATG ACTCTGCCGA CCATGAAACG CTCCCTCAGT 
GGGACGCTTG CTACAAGCAG TGGAGGAGGA GGAGGAGGTG CTGTGGAGCA GGAGGTGTAT 
GTGAGCCGAC AGTCCTTCAA AGGCCCAGCT CATCGCACCA TCAGCCGCAT TAACAATCGG 
CAAACCCTTC GGACGTCCAG TGTGCAGTCT GGCATGTTCG GAAGTGGCGG GGGATTCAGC 
GGCTCCCAGG GGAACCTGTA CATGATGCAG CAGGGGAGGC TGTCGCGTGC TGGCTCCGTC 
AGGAGCATCC ATAGTGTTGG GAGAGGCAAG GACGTGTTCG ATGGCATGGA CATGGCTGGC 
AGCATGGGCA ATCTGAGTGG ACTCAACAGT TTGGACATGC CTACTGCCAT CAACTATCTT 
GACCAGTCCG ATCAGGAACT TCAGATGTTG GGCGCCGCCT ACGTTCAGCA TGAGTGTTAC 
AGTAACAAAG ATGCCAAAAA ACAGGTGAAC CAGTTGAAGG GAATTCCTCG ACTGGTGCAG 
CTTTTCAACA GTGACAACCA AGAGGTGCAG CGCTTTGCAA CCGGTGCCAC AAGAAACCTC 
ATCTACGAGA ATATGGAGAA CAAAGTGGCT CTTATTGAAG CTGGCGGGAT TCCCAAACTC 
ATACAGGCAC TGAAAGTAGA AGATGATGAG TTACACAAAA ACATTACAGG TATCCTCTGG 
AATTTGTCCT CTAAGGATAA TCTGAAAGAA AGGCTGGCAC GAGAAATTCT TCCTGAATTG 
ACAGACAAGA TTTTGATTCC CCTCTCCGGA ACCGGAGACC AGGACATCAT TGAGATGAAC 
CCCTCAGAGT CTGACATCTT CTTCAACACT ACTGGCTGTC TCAGGAACAT GAGCTCTGTA 
AATGAGAAGA CCAGACAACT GATGAGAGAA ACCAAAGGCC TCATAGACGC TCTGGTCGGC 
TACATTCAGA AATGTGTGGT GGACAGTAAA GTGGAAGAGA AGGGTGTGGA GAACTGTGTG 
TGTGTGTTAA GGAATCTGTC CTATCAGGTG TACAACGAGA TCCCCCCCTC TATAGCCTCA 
CGTCTAGATG GTCCGCGTCG TGCTCAGAGC TCTTCAAAAG CAGAACCCAT CGGCTGCTTC 
ACTCCTAACA GCAAGAAAGC CAAAGAAAGA AAAAATCAGG ACCTCACCAC ATTTACAGAA 
GTTTCACGGA CACCCAAAGA CATCGAGTGG CTCTGGCACC CAAAGATAAT TGAGTTGTAT 
AATCAGGTGC TCACGCGCTG TGAGATCAAC TCCACCACAC GAGAGGCTGC GGCCGGAGCC 
TTGCAGAACA TCACTGCTGG AGACAAGAGG TGGGCGTCCA TCTTGAGTCT TGTGGCATTG 
GAGCAGAATA GGATGCTTCC TGTTATTCTG GATCTCCTCA AAACCGACAA GGATCTGGAG 
CTCCGTTCTC TCACCGGCTT TCTCAGAAAC CTCTCTCGTC ACACCAAAGA CAAGAATGAC 
ATGGCTACTA AGGTGGTAAA TACATTGGTG CTTAAACTGC CCGCTGATGG CCGTCAGAAG 
CAGCCGTCCA GCGACGTCGT AGTGAACATT TGTGGAGCTT TAAACAACCT GGTGACCGGC 
AGCATGTTGG CCGCACGAGA CATCACTTAC TTTGATGGTC TGCGCAAGCT ATTTGAGATT 
AAAAACAACC ATGACAACAG CCCCGACAAA CTGAAAGCTG CCAAAGCAGC AGTAACAGTT 
CTAAGCAACA TGTTCCAGTA CAAGAAATTA CACAAAGACT ACAAAGAGAA AGGATTCGAG 
AAGGAAGCCT TCTTAGACAT GACCTTCTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa29442
Clone ID Related Accession (Same CDS sequence) XM_005170678.1
Accession Version XM_005170678.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 2376bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product plakophilin-3 isoform X2
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
ATGACAAAAT ATTCAACAGT GGGACAAAAC TTTATCCCGA GTTTCAGCTC GAAATCTTTT 
GTCAACTCGT CTGGCCGACA AATAGTGGCC CAGCGTCCAT CCCAGTACTT GAGCGGTGGT 
TTCTCTTCCC GCTCTGCCGT TGAGTTCACC CCAAGAGCCA AAATGAGTTA CACAGCAGGA 
GGAGGTGGTG GTGGCGGTAG CTCATATTAC CAAGAAGATT TTGCTAGCGG TGACTATGGT 
GGTGGCGGGT ATCAGAGTGG CGGTTATCAA ATTAGTGGCG GCCAAGTTCA ACAGCAGCAG 
GTCAACAAAG TGACCCGTTC CCTGAGCCGA ATGGGGGGTG ACCCAGAGAC CTTATCCATG 
CACTCCATGC GCGTGTCAGC CATACCACAG CAGGTTGTTT CTTCTTGGGT GGCTCAGGAA 
GACAGCGATG GCAGCATGGT TTCAGAACGC GACGCTACTT ATACACAGCG GAGCATGAGC 
AATGGCTACG CCGCCAACAC TTACCCACGC CAGTCCATGT ACTCCAACTC AAATATGAAT 
GGATTTGAAA GTGCGCAGCA GCAGGTCAGC TCCATGACTC TGCCGACCAT GAAACGCTCC 
CTCAGTGGGA CGCTTGCTAC AAGCAGTGGA GGAGGAGGAG GAGGTGCTGT GGAGCAGGAG 
GTGTATGTGA GCCGACAGTC CTTCAAAGGC CCAGCTCACC GCACCATCAG CCGCATTAAC 
AATCGGCAAA CCCTTCGGAC GTCCAGTGTG CAGTCTGGCA TGTTCGGAAG TGGCGGGGGA 
TTCAGCGGCT CCCAGGGGAA CCTGTACATG ATGCAGCAGG GGAGGCTATC GCGTGCTGGC 
TCCGTCAGGA GCATCCATAG TGTTGGGAGA GGCAAGGACG TGTTCGATGG CATGGACATG 
GCTGGCAGCA TGGGCAATCT GAGTGGACTC AACAGTTTGG ACATGCCTAC TGCCATCAAC 
TATCTTGACC AGTCCGATCA GGAACTTCAG ATGTTGGGCG CCGCCTACGT TCAGCATGAG 
TGTTACAGTA ACAAAGATGC CAAAAAACAG GTGAACCAGT TAAAGGGAAT TCCTCGACTG 
GTGCAGCTTT TCAACAGTGA CAACCAAGAG GTGCAGCGCT TTGCAACCGG TGCCACAAGA 
AACCTCATCT ACGAGAATAT GGAGAACAAA GTGGCTCTTA TTGAAGCTGG CGGAATTCCC 
AAACTCATAC AGGCACTGAA AGTAGAAGAT GATGAGTTAC ACAAAAACAT TACAGGTATC 
CTCTGGAATT TGTCCTCTAA GGATAATCTG AAAGAAAGGC TGGCACGAGA AATTCTTCCT 
GAATTGACAG ACAGGATTTT GATTCCCCTC TCCGGAACCG GAGACCAGGA CATCATTGAG 
CTGAACCCCT CAGAGTCTGA CATCTTCTTC AACACCACTG GCTGTCTCAG GAACATGAGC 
TCTGTAAATG AGAAGACCAG ACAACTGATG AGAGAAACCA AAGGCCTCAT AGACGCTCTG 
GTCGGCTACA TTAAGAAATG TGTGGTGGAC AGTAAAGTGG AAGAGAAGGG TGTGGAGAAC 
TGTGTGTGTG TGTTAAGGAA TCTGTCCTAT CAGGTGTACA ACGAGATCCC CCCCTCTATA 
GCCTCACGTC TAGATGGTCC GCGTCGTGCT CAGAGCTCTT CAAAAGCAGA ACCCATCGGC 
TGCTTCACTC CTAACAGCAA GAAAGCCAAA GAAAGAAAAA ATCAGGACCT CACCACATTT 
ACAGAAGTTT CACGGACACC CAAAGACATC GAGTGGCTCT GGCACCCAAA GATAATTGAG 
TTGTATAACC AGGTGCTCAC GCGCTGTGAG ATCAACTCCA CCACACGAGA GGCTGCGGCC 
GGAGCCTTGC AGAACATCAC TGCTGGAGAC AAGAGGTGGG CGTCCATCTT GAGTCTTGTG 
GCATTGGAGC AGAATAGGAT GCTTCCTGTT ATTCTGGATC TCCTCAAAAC CGACAAGGAT 
CTGGAGCTCC GTTCTCTCAC CGGCTTTCTC AGAAACCTCT CTCGTCACAC CAAAGACAAG 
AATGACATGG CTACTAAGGT GGTAAATACA TTGGTGCTTA AACTGCCCGC TGATGGCCGT 
CAGAAGCAGC CGTCCAGCGA CGTCGTAGTG AACATTTGTG GAGCTTTAAA CAACCTGGTG 
ACCGGCAGCA TGTTGGCCGC ACGAGACATC ACTTACTTTG ATGGTCTGCG CAAGCTATTT 
GAGATTAAAA ACAACCATGA CAACAGCCCC AACAAACTGA AAGCTGCCAA AGCAGCAGTA 
ACAGTTCTAA GCAACATGTT CCAGTACAAG AAATTACACA AAGACTACAA AGAGAAAGGA 
TTCGAGAAGG AAGCCTTCTT AGACATGACC TTCTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_005170735.1
CDS256..2631
Translation

Target ORF information:

RefSeq Version XM_005170678.1
Organism Danio rerio(zebrafish)
Definition Danio rerio plakophilin 3a (pkp3a), transcript variant X2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_005170678.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
ATGACAAAAT ATTCAACAGT GGGACAAAAC TTTATCCCGA GTTTCAGCTC GAAATCTTTT 
GTCAACTCGT CTGGCCGACA AATAGTGGCC CAGCGTCCAT CCCAGTACTT GAGCGGTGGT 
TTCTCTTCCC GCTCTGCCGT TGAGTTCACC CCAAGAGCCA AAATGAGTTA CACAGCAGGA 
GGAGGTGGTG GTGGCGGTAG CTCATATTAC CAAGAAGATT TTGCTAGCGG TGACTATGGT 
GGTGGCGGGT ATCAGAGTGG CGGTTATCAA ATTAGTGGCG GCCAAGTTCA ACAGCAGCAG 
GTCAACAAAG TGACCCGTTC CCTGAGCCGA ATGGGGGGTG ACCCAGAGAC CTTATCCATG 
CACTCCATGC GCGTGTCAGC CATACCACAG CAGGTTGTTT CTTCTTGGGT GGCTCAGGAA 
GACAGCGATG GCAGCATGGT TTCAGAACGC GACGCTACTT ATACACAGCG GAGCATGAGC 
AATGGCTACG CCGCCAACAC TTACCCACGC CAGTCCATGT ACTCCAACTC AAATATGAAT 
GGATTTGAAA GTGCGCAGCA GCAGGTCAGC TCCATGACTC TGCCGACCAT GAAACGCTCC 
CTCAGTGGGA CGCTTGCTAC AAGCAGTGGA GGAGGAGGAG GAGGTGCTGT GGAGCAGGAG 
GTGTATGTGA GCCGACAGTC CTTCAAAGGC CCAGCTCACC GCACCATCAG CCGCATTAAC 
AATCGGCAAA CCCTTCGGAC GTCCAGTGTG CAGTCTGGCA TGTTCGGAAG TGGCGGGGGA 
TTCAGCGGCT CCCAGGGGAA CCTGTACATG ATGCAGCAGG GGAGGCTATC GCGTGCTGGC 
TCCGTCAGGA GCATCCATAG TGTTGGGAGA GGCAAGGACG TGTTCGATGG CATGGACATG 
GCTGGCAGCA TGGGCAATCT GAGTGGACTC AACAGTTTGG ACATGCCTAC TGCCATCAAC 
TATCTTGACC AGTCCGATCA GGAACTTCAG ATGTTGGGCG CCGCCTACGT TCAGCATGAG 
TGTTACAGTA ACAAAGATGC CAAAAAACAG GTGAACCAGT TAAAGGGAAT TCCTCGACTG 
GTGCAGCTTT TCAACAGTGA CAACCAAGAG GTGCAGCGCT TTGCAACCGG TGCCACAAGA 
AACCTCATCT ACGAGAATAT GGAGAACAAA GTGGCTCTTA TTGAAGCTGG CGGAATTCCC 
AAACTCATAC AGGCACTGAA AGTAGAAGAT GATGAGTTAC ACAAAAACAT TACAGGTATC 
CTCTGGAATT TGTCCTCTAA GGATAATCTG AAAGAAAGGC TGGCACGAGA AATTCTTCCT 
GAATTGACAG ACAGGATTTT GATTCCCCTC TCCGGAACCG GAGACCAGGA CATCATTGAG 
CTGAACCCCT CAGAGTCTGA CATCTTCTTC AACACCACTG GCTGTCTCAG GAACATGAGC 
TCTGTAAATG AGAAGACCAG ACAACTGATG AGAGAAACCA AAGGCCTCAT AGACGCTCTG 
GTCGGCTACA TTAAGAAATG TGTGGTGGAC AGTAAAGTGG AAGAGAAGGG TGTGGAGAAC 
TGTGTGTGTG TGTTAAGGAA TCTGTCCTAT CAGGTGTACA ACGAGATCCC CCCCTCTATA 
GCCTCACGTC TAGATGGTCC GCGTCGTGCT CAGAGCTCTT CAAAAGCAGA ACCCATCGGC 
TGCTTCACTC CTAACAGCAA GAAAGCCAAA GAAAGAAAAA ATCAGGACCT CACCACATTT 
ACAGAAGTTT CACGGACACC CAAAGACATC GAGTGGCTCT GGCACCCAAA GATAATTGAG 
TTGTATAACC AGGTGCTCAC GCGCTGTGAG ATCAACTCCA CCACACGAGA GGCTGCGGCC 
GGAGCCTTGC AGAACATCAC TGCTGGAGAC AAGAGGTGGG CGTCCATCTT GAGTCTTGTG 
GCATTGGAGC AGAATAGGAT GCTTCCTGTT ATTCTGGATC TCCTCAAAAC CGACAAGGAT 
CTGGAGCTCC GTTCTCTCAC CGGCTTTCTC AGAAACCTCT CTCGTCACAC CAAAGACAAG 
AATGACATGG CTACTAAGGT GGTAAATACA TTGGTGCTTA AACTGCCCGC TGATGGCCGT 
CAGAAGCAGC CGTCCAGCGA CGTCGTAGTG AACATTTGTG GAGCTTTAAA CAACCTGGTG 
ACCGGCAGCA TGTTGGCCGC ACGAGACATC ACTTACTTTG ATGGTCTGCG CAAGCTATTT 
GAGATTAAAA ACAACCATGA CAACAGCCCC AACAAACTGA AAGCTGCCAA AGCAGCAGTA 
ACAGTTCTAA GCAACATGTT CCAGTACAAG AAATTACACA AAGACTACAA AGAGAAAGGA 
TTCGAGAAGG AAGCCTTCTT AGACATGACC TTCTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa40185
Clone ID Related Accession (Same CDS sequence) XM_009298029.1
Accession Version XM_009298029.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 2610bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product plakophilin-3 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
ATGAGCACGA GTGTGACTTC GGAGAGCGTC TTTCTCTCGG CGCTGCAGCC CAACTCTACC 
GTCAGCACGT ACGCGGTCCC GTCCGAGAAC GAGCTCGGGT CGCACAAGGA GGAATCCAGA 
TTTAAGCGCA TGCAACAGCA GGTGTCCATG AGACTAGCGG AGAAATCCAC GCTCCCGCGC 
CAGAACGGCT CTTCGTCACA ATACGCGTCC TCAGAGTCTG GTAATTATTC AACAATGACA 
AAATATTCAA CAGTGGGACA AAACTTTATC CCGAGTTTCA GCTCGAAATC TTTTGTCAAC 
TCGTCTGGCC GACAAATAGT GGCCCAGCGT CCATCCCAGT ACTTGAGCGG TGGTTTCTCT 
TCCCGCTCTG CCGTTGAGTT CACCCCAAGA GCCAAAATGA GTTACACAGC AGGAGGAGGT 
GGTGGTGGCG GTAGCTCATA TTACCAAGAA GATTTTGCTA GCGGTGACTA TGGTGGTGGC 
GGGTATCAGA GTGGCGGTTA TCAAATTAGT GGCGGCCAAG TTCAACAGCA GCAGGTCAAC 
AAAGTGACCC GTTCCCTGAG CCGAATGGGG GGTGACCCAG AGACCTTATC CATGCACTCC 
ATGCGCGTGT CAGCCATACC ACAGCAGGTT GTTTCTTCTT GGGTGGCTCA GGAAGACAGC 
GATGGCAGCA TGGTTTCAGA ACGCGACGCT ACTTATACAC AGCGGAGCAT GAGCAATGGC 
TACGCCGCCA ACACTTACCC ACGCCAGTCC ATGTACTCCA ACTCAAATAT GAATGGATTT 
GAAAGTGCGC AGCAGCAGGT CAGCTCCATG ACTCTGCCGA CCATGAAACG CTCCCTCAGT 
GGGACGCTTG CTACAAGCAG TGGAGGAGGA GGAGGAGGTG CTGTGGAGCA GGAGGTGTAT 
GTGAGCCGAC AGTCCTTCAA AGGCCCAGCT CACCGCACCA TCAGCCGCAT TAACAATCGG 
CAAACCCTTC GGACGTCCAG TGTGCAGTCT GGCATGTTCG GAAGTGGCGG GGGATTCAGC 
GGCTCCCAGG GGAACCTGTA CATGATGCAG CAGGGGAGGC TATCGCGTGC TGGCTCCGTC 
AGGAGCATCC ATAGTGTTGG GAGAGGCAAG GACGTGTTCG ATGGCATGGA CATGGCTGGC 
AGCATGGGCA ATCTGAGTGG ACTCAACAGT TTGGACATGC CTACTGCCAT CAACTATCTT 
GACCAGTCCG ATCAGGAACT TCAGATGTTG GGCGCCGCCT ACGTTCAGCA TGAGTGTTAC 
AGTAACAAAG ATGCCAAAAA ACAGGTGAAC CAGTTAAAGG GAATTCCTCG ACTGGTGCAG 
CTTTTCAACA GTGACAACCA AGAGGTGCAG CGCTTTGCAA CCGGTGCCAC AAGAAACCTC 
ATCTACGAGA ATATGGAGAA CAAAGTGGCT CTTATTGAAG CTGGCGGAAT TCCCAAACTC 
ATACAGGCAC TGAAAGTAGA AGATGATGAG TTACACAAAA ACATTACAGG TATCCTCTGG 
AATTTGTCCT CTAAGGATAA TCTGAAAGAA AGGCTGGCAC GAGAAATTCT TCCTGAATTG 
ACAGACAGGA TTTTGATTCC CCTCTCCGGA ACCGGAGACC AGGACATCAT TGAGCTGAAC 
CCCTCAGAGT CTGACATCTT CTTCAACACC ACTGGCTGTC TCAGGAACAT GAGCTCTGTA 
AATGAGAAGA CCAGACAACT GATGAGAGAA ACCAAAGGCC TCATAGACGC TCTGGTCGGC 
TACATTAAGA AATGTGTGGT GGACAGTAAA GTGGAAGAGA AGGGTGTGGA GAACTGTGTG 
TGTGTGTTAA GGAATCTGTC CTATCAGGTG TACAACGAGA TCCCCCCCTC TATAGCCTCA 
CGTCTAGATG GTCCGCGTCG TGCTCAGAGC TCTTCAAAAG CAGAACCCAT CGGCTGCTTC 
ACTCCTAACA GCAAGAAAGC CAAAGAAAGA AAAAATCAGG ACCTCACCAC ATTTACAGAA 
GTTTCACGGA CACCCAAAGA CATCGAGTGG CTCTGGCACC CAAAGATAAT TGAGTTGTAT 
AACCAGGTGC TCACGCGCTG TGAGATCAAC TCCACCACAC GAGAGGCTGC GGCCGGAGCC 
TTGCAGAACA TCACTGCTGG AGACAAGAGG TGGGCGTCCA TCTTGAGTCT TGTGGCATTG 
GAGCAGAATA GGATGCTTCC TGTTATTCTG GATCTCCTCA AAACCGACAA GGATCTGGAG 
CTCCGTTCTC TCACCGGCTT TCTCAGAAAC CTCTCTCGTC ACACCAAAGA CAAGAATGAC 
ATGGCTACTA AGGTGGTAAA TACATTGGTG CTTAAACTGC CCGCTGATGG CCGTCAGAAG 
CAGCCGTCCA GCGACGTCGT AGTGAACATT TGTGGAGCTT TAAACAACCT GGTGACCGGC 
AGCATGTTGG CCGCACGAGA CATCACTTAC TTTGATGGTC TGCGCAAGCT ATTTGAGATT 
AAAAACAACC ATGACAACAG CCCCAACAAA CTGAAAGCTG CCAAAGCAGC AGTAACAGTT 
CTAAGCAACA TGTTCCAGTA CAAGAAATTA CACAAAGACT ACAAAGAGAA AGGATTCGAG 
AAGGAAGCCT TCTTAGACAT GACCTTCTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_009296304.1
CDS109..2718
Translation

Target ORF information:

RefSeq Version XM_009298029.1
Organism Danio rerio(zebrafish)
Definition Danio rerio plakophilin 3a (pkp3a), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_009298029.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
ATGAGCACGA GTGTGACTTC GGAGAGCGTC TTTCTCTCGG CGCTGCAGCC CAACTCTACC 
GTCAGCACGT ACGCGGTCCC GTCCGAGAAC GAGCTCGGGT CGCACAAGGA GGAATCCAGA 
TTTAAGCGCA TGCAACAGCA GGTGTCCATG AGACTAGCGG AGAAATCCAC GCTCCCGCGC 
CAGAACGGCT CTTCGTCACA ATACGCGTCC TCAGAGTCTG GTAATTATTC AACAATGACA 
AAATATTCAA CAGTGGGACA AAACTTTATC CCGAGTTTCA GCTCGAAATC TTTTGTCAAC 
TCGTCTGGCC GACAAATAGT GGCCCAGCGT CCATCCCAGT ACTTGAGCGG TGGTTTCTCT 
TCCCGCTCTG CCGTTGAGTT CACCCCAAGA GCCAAAATGA GTTACACAGC AGGAGGAGGT 
GGTGGTGGCG GTAGCTCATA TTACCAAGAA GATTTTGCTA GCGGTGACTA TGGTGGTGGC 
GGGTATCAGA GTGGCGGTTA TCAAATTAGT GGCGGCCAAG TTCAACAGCA GCAGGTCAAC 
AAAGTGACCC GTTCCCTGAG CCGAATGGGG GGTGACCCAG AGACCTTATC CATGCACTCC 
ATGCGCGTGT CAGCCATACC ACAGCAGGTT GTTTCTTCTT GGGTGGCTCA GGAAGACAGC 
GATGGCAGCA TGGTTTCAGA ACGCGACGCT ACTTATACAC AGCGGAGCAT GAGCAATGGC 
TACGCCGCCA ACACTTACCC ACGCCAGTCC ATGTACTCCA ACTCAAATAT GAATGGATTT 
GAAAGTGCGC AGCAGCAGGT CAGCTCCATG ACTCTGCCGA CCATGAAACG CTCCCTCAGT 
GGGACGCTTG CTACAAGCAG TGGAGGAGGA GGAGGAGGTG CTGTGGAGCA GGAGGTGTAT 
GTGAGCCGAC AGTCCTTCAA AGGCCCAGCT CACCGCACCA TCAGCCGCAT TAACAATCGG 
CAAACCCTTC GGACGTCCAG TGTGCAGTCT GGCATGTTCG GAAGTGGCGG GGGATTCAGC 
GGCTCCCAGG GGAACCTGTA CATGATGCAG CAGGGGAGGC TATCGCGTGC TGGCTCCGTC 
AGGAGCATCC ATAGTGTTGG GAGAGGCAAG GACGTGTTCG ATGGCATGGA CATGGCTGGC 
AGCATGGGCA ATCTGAGTGG ACTCAACAGT TTGGACATGC CTACTGCCAT CAACTATCTT 
GACCAGTCCG ATCAGGAACT TCAGATGTTG GGCGCCGCCT ACGTTCAGCA TGAGTGTTAC 
AGTAACAAAG ATGCCAAAAA ACAGGTGAAC CAGTTAAAGG GAATTCCTCG ACTGGTGCAG 
CTTTTCAACA GTGACAACCA AGAGGTGCAG CGCTTTGCAA CCGGTGCCAC AAGAAACCTC 
ATCTACGAGA ATATGGAGAA CAAAGTGGCT CTTATTGAAG CTGGCGGAAT TCCCAAACTC 
ATACAGGCAC TGAAAGTAGA AGATGATGAG TTACACAAAA ACATTACAGG TATCCTCTGG 
AATTTGTCCT CTAAGGATAA TCTGAAAGAA AGGCTGGCAC GAGAAATTCT TCCTGAATTG 
ACAGACAGGA TTTTGATTCC CCTCTCCGGA ACCGGAGACC AGGACATCAT TGAGCTGAAC 
CCCTCAGAGT CTGACATCTT CTTCAACACC ACTGGCTGTC TCAGGAACAT GAGCTCTGTA 
AATGAGAAGA CCAGACAACT GATGAGAGAA ACCAAAGGCC TCATAGACGC TCTGGTCGGC 
TACATTAAGA AATGTGTGGT GGACAGTAAA GTGGAAGAGA AGGGTGTGGA GAACTGTGTG 
TGTGTGTTAA GGAATCTGTC CTATCAGGTG TACAACGAGA TCCCCCCCTC TATAGCCTCA 
CGTCTAGATG GTCCGCGTCG TGCTCAGAGC TCTTCAAAAG CAGAACCCAT CGGCTGCTTC 
ACTCCTAACA GCAAGAAAGC CAAAGAAAGA AAAAATCAGG ACCTCACCAC ATTTACAGAA 
GTTTCACGGA CACCCAAAGA CATCGAGTGG CTCTGGCACC CAAAGATAAT TGAGTTGTAT 
AACCAGGTGC TCACGCGCTG TGAGATCAAC TCCACCACAC GAGAGGCTGC GGCCGGAGCC 
TTGCAGAACA TCACTGCTGG AGACAAGAGG TGGGCGTCCA TCTTGAGTCT TGTGGCATTG 
GAGCAGAATA GGATGCTTCC TGTTATTCTG GATCTCCTCA AAACCGACAA GGATCTGGAG 
CTCCGTTCTC TCACCGGCTT TCTCAGAAAC CTCTCTCGTC ACACCAAAGA CAAGAATGAC 
ATGGCTACTA AGGTGGTAAA TACATTGGTG CTTAAACTGC CCGCTGATGG CCGTCAGAAG 
CAGCCGTCCA GCGACGTCGT AGTGAACATT TGTGGAGCTT TAAACAACCT GGTGACCGGC 
AGCATGTTGG CCGCACGAGA CATCACTTAC TTTGATGGTC TGCGCAAGCT ATTTGAGATT 
AAAAACAACC ATGACAACAG CCCCAACAAA CTGAAAGCTG CCAAAGCAGC AGTAACAGTT 
CTAAGCAACA TGTTCCAGTA CAAGAAATTA CACAAAGACT ACAAAGAGAA AGGATTCGAG 
AAGGAAGCCT TCTTAGACAT GACCTTCTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Proteolysis regulates cardiomyocyte maturation and tissue integration.
Nature communications814495(2017 Feb)
Fukuda R,Gunawan F,Beisaw A,Jimenez-Amilburu V,Maischein HM,Kostin S,Kawakami K,Stainier DY


book

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J


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RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R


book

Unilateral dampening of Bmp activity by nodal generates cardiac left-right asymmetry.
Developmental cell24(6)660-7(2013 Mar)
Veerkamp J,Rudolph F,Cseresnyes Z,Priller F,Otten C,Renz M,Schaefer L,Abdelilah-Seyfried S


book

Interferon regulatory factor 6 promotes differentiation of the periderm by activating expression of Grainyhead-like 3.
The Journal of investigative dermatology133(1)68-77(2013 Jan)
de la Garza G,Schleiffarth JR,Dunnwald M,Mankad A,Weirather JL,Bonde G,Butcher S,Mansour TA,Kousa YA,Fukazawa CF,Houston DW,Manak JR,Schutte BC,Wagner DS,Cornell RA