Gene Symbol | vax1 |
Entrez Gene ID | 373870 |
Full Name | ventral anterior homeobox 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » vax1 cDNA ORF clone
Gene Symbol | vax1 |
Entrez Gene ID | 373870 |
Full Name | ventral anterior homeobox 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_017351603.1 | XP_017207092.1 | ventral anterior homeobox 1 isoform X1 |
NM_194410.2 | NP_919391.2 | ventral anterior homeobox 1 |
Pan troglodytes (chimpanzee) | VAX1 | XP_003312832.1 |
Mus musculus (house mouse) | Vax1 | NP_033527.1 |
Canis lupus familiaris (dog) | VAX1 | XP_865035.1 |
Bos taurus (cattle) | VAX1 | NP_001178071.1 |
Homo sapiens (human) | VAX1 | NP_001106175.1 |
Rattus norvegicus (Norway rat) | Vax1 | NP_072158.1 |
Gallus gallus (chicken) | VAX1 | NP_990130.1 |
Danio rerio (zebrafish) | vax1 | NP_919391.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100486982 | XP_002944042.2 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
Detection and signal amplification in zebrafish RNA FISH.
Hauptmann G, Lauter G, S?ll I
Methods (San Diego, Calif.)9850-59(2016 Apr)
Six3 regulates optic nerve development via multiple mechanisms.
Samuel A, Rubinstein AM, Azar TT, Ben-Moshe Livne Z, Kim SH, Inbal A
Scientific reports620267(2016 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
vax1 and vax2 are expressed in overlapping domains encompassing the ventral retina, optic stalks and preoptic area; Hh signals act downstream of the Nodal pathway to promote Vax gene expression.
Title: Hedgehog signalling maintains the optic stalk-retinal interface through the regulation of Vax gene activity.
The following vax1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the vax1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa00358 | |
Clone ID Related Accession (Same CDS sequence) | NM_194410.2 | |
Accession Version | NM_194410.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 954bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Danio rerio(zebrafish) | |
Product | ventral anterior homeobox 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC065951.1. On Jun 26, 2005 this sequence version replaced NM_194410.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC065951.1, AY185348.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4476804 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGAAGTCC GCTACAGTCA AGACTCAGAG TCCGGAATGC TGCTGAAGAA TGGACTAAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_919391.2 |
CDS | 233..1186 |
Translation |
Target ORF information:
Target ORF information:
|
NM_194410.2 |
1 | ATGGAAGTCC GCTACAGTCA AGACTCAGAG TCCGGAATGC TGCTGAAGAA TGGACTAAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa22426 | |
Clone ID Related Accession (Same CDS sequence) | XM_017351603.1 | |
Accession Version | XM_017351603.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 954bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | ventral anterior homeobox 1 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007128.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGTCC GCTACAGTCA AGACTCAGAG TCCGGAATGC TGCTGAAGAA TGGACTAAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017207092.1 |
CDS | 575..1528 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017351603.1 |
1 | ATGGAAGTCC GCTACAGTCA AGACTCAGAG TCCGGAATGC TGCTGAAGAA TGGACTAAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
Detection and signal amplification in zebrafish RNA FISH. |
Six3 regulates optic nerve development via multiple mechanisms. |