Gene Symbol |
srsf1a |
Entrez Gene ID |
406288 |
Full Name |
serine/arginine-rich splicing factor 1a |
Synonyms |
sfrs1a,sfrs1l,wu:fb52g10,wu:fb97g12,zgc:66146 |
General protein information |
- Preferred Names
serine/arginine-rich splicing factor 1a
Names
serine/arginine-rich splicing factor 1A splicing factor, arginine/serine-rich 1, like splicing factor, arginine/serine-rich 1-like protein 1 splicing factor, arginine/serine-rich 1a
|
Gene Type |
protein-coding |
Organism |
Danio rerio(zebrafish) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_005157414.3 |
XP_005157471.1 |
serine/arginine-rich splicing factor 1A isoform X1 |
XM_005157415.3 |
XP_005157472.1 |
serine/arginine-rich splicing factor 1A isoform X1 |
XM_005157415.4 |
XP_005157472.1 |
serine/arginine-rich splicing factor 1A isoform X1 |
XM_005157414.4 |
XP_005157471.1 |
serine/arginine-rich splicing factor 1A isoform X1 |
NM_213015.1 |
NP_998180.1 |
serine/arginine-rich splicing factor 1A |
Pan troglodytes (chimpanzee) |
SRSF1 |
NP_001182476.1 |
Gallus gallus (chicken) |
SRSF1 |
NP_001107213.1 |
Xenopus tropicalis (tropical clawed frog) |
srsf1 |
NP_001006919.1 |
Homo sapiens (human) |
SRSF1 |
NP_008855.1 |
Danio rerio (zebrafish) |
srsf1a |
NP_998180.1 |
Drosophila melanogaster (fruit fly) |
SF2 |
NP_652611.1 |
Mus musculus (house mouse) |
Srsf1 |
NP_775550.2 |
Arabidopsis thaliana (thale cress) |
SR1 |
NP_850934.1 |
Canis lupus familiaris (dog) |
SRSF1 |
XP_005624772.1 |
Bos taurus (cattle) |
SRSF1 |
NP_001069862.1 |
|
SRSF1 |
XP_001103473.2 |
Rattus norvegicus (Norway rat) |
Srsf1 |
NP_001103022.1 |
Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP010496 |
XP_314469.4 |
Caenorhabditis elegans (roundworm) |
rsp-3 |
NP_499649.2 |
Arabidopsis thaliana (thale cress) |
AT4G02430 |
NP_567235.3 |
Related articles in PubMed
Number of inadvertent RNA targets for morpholino knockdown in Danio rerio is largely underestimated: evidence from the study of Ser/Arg-rich splicing factors.
Joris M, Schloesser M, Baurain D, Hanikenne M, Muller M, Motte P
Nucleic acids research45(16)9547-9557(2017 Sep)
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
Genome wide analysis reveals Zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish.
Winata CL, Kondrychyn I, Kumar V, Srinivasan KG, Orlov Y, Ravishankar A, Prabhakar S, Stanton LW, Korzh V, Mathavan S
PLoS genetics9(10)e1003852(2013 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following srsf1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the srsf1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
ODa00342 |
Clone ID Related Accession (Same CDS sequence) |
NM_213015.1
|
Accession Version |
NM_213015.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 738bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-04-07 |
Organism |
Danio rerio(zebrafish) |
Product |
serine/arginine-rich splicing factor 1A |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC055511.1.
Sequence Note: This sequence has been modified as follows: removed 32 bp suspected to be vector contamination from the 5' end.
##Evidence-Data-START##
Transcript exon combination :: BC055511.1 [ECO:0000332]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGAGGTG GTGGTGGGGC TCCTAGAGGT AGATATGGAC CCCCATCCAG ACGTTCAGAG TACAGAGTAA TTGTTTCAGG ACTTCCACCA AGCGGCAGCT GGCAGGATCT GAAGGATCAC ATGCGTGAAG CAGGTGATGT ATGTTACGCT GACGTTTTCC GAGATGGAAC TGGTGTGGTG GAGTTTGTTC GCAAAGAGGA CATGACCTAC GCCGTTCGCA AACTGGATAA CACAAAATTC CGGTCTCATG AGGGAGAAAC TGCGTACATC CGCGTAAAGG TGGACGGACC CCGCAGTCCA AGCTATGGAA GATCAAGGTC AAGGAGCCGC AGTCGCAGCA GGAGTCGCAG CCGCAGCAAC AACCGTAGCC GAAGCTACTC TCCACGCCGC AGCCGAGGAT CCCCTTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_998180.1 |
CDS | 48..785 |
Translation | |
Target ORF information:
RefSeq Version | NM_213015.1 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio serine and arginine rich splicing factor 1a (srsf1a), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_213015.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGAGGTG GTGGTGGGGC TCCTAGAGGT AGATATGGAC CCCCATCCAG ACGTTCAGAG TACAGAGTAA TTGTTTCAGG ACTTCCACCA AGCGGCAGCT GGCAGGATCT GAAGGATCAC ATGCGTGAAG CAGGTGATGT ATGTTACGCT GACGTTTTCC GAGATGGAAC TGGTGTGGTG GAGTTTGTTC GCAAAGAGGA CATGACCTAC GCCGTTCGCA AACTGGATAA CACAAAATTC CGGTCTCATG AGGGAGAAAC TGCGTACATC CGCGTAAAGG TGGACGGACC CCGCAGTCCA AGCTATGGAA GATCAAGGTC AAGGAGCCGC AGTCGCAGCA GGAGTCGCAG CCGCAGCAAC AACCGTAGCC GAAGCTACTC TCCACGCCGC AGCCGAGGAT CCCCTTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa20305 |
Clone ID Related Accession (Same CDS sequence) |
XM_005157414.3
, XM_005157415.3
, XM_005157415.4
, XM_005157414.4
|
Accession Version |
XM_005157414.3 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 774bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-06-23 |
Organism |
Danio rerio(Zebrafish) |
Product |
serine/arginine-rich splicing factor 1A isoform X1 |
Comment |
MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 24, 2016 this sequence version replaced XM_005157414.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGTGGTG GTGGGGCTCC TAGAGGTAGA TATGGACCCC CATCCAGACG TTCAGAGTAC AGAGTAATTG TTTCAGGACT TCCACCAAGC GGCAGCTGGC AGGATCTGAA GGATCACATG CGTGAAGCAG GTGATGTATG TTACGCTGAC GTTTTCCGAG ATGGAACTGG TGTGGTGGAG TTTGTTCGCA AAGAGGACAT GACCTACGCC GTTCGCAAAC TGGATAACAC AAAATTCCGG TCCCATGAGG GAGAAACTGC GTACATCCGC GTAAAGGTGG ACGGACCCCG CAGTCCAAGC TATGGAAGAT CAAGGTCAAG GAGCCGCAGT CGCAGCAGGA GTCGCAGCCG CAGCAACAAC CGTAGCCGAA GCTACTCTCC ACGCCGCAGC CGAGGATCCC CGCAGTACTC GCCACGTCAT AGCCGTTCCC GCTCTCGCTC CTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005157471.1 |
CDS | 138..911 |
Translation | |
Target ORF information:
RefSeq Version | XM_005157414.3 |
Organism | Danio rerio(Zebrafish) |
Definition | Danio rerio serine/arginine-rich splicing factor 1a (srsf1a), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005157414.3 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGTGGTG GTGGGGCTCC TAGAGGTAGA TATGGACCCC CATCCAGACG TTCAGAGTAC AGAGTAATTG TTTCAGGACT TCCACCAAGC GGCAGCTGGC AGGATCTGAA GGATCACATG CGTGAAGCAG GTGATGTATG TTACGCTGAC GTTTTCCGAG ATGGAACTGG TGTGGTGGAG TTTGTTCGCA AAGAGGACAT GACCTACGCC GTTCGCAAAC TGGATAACAC AAAATTCCGG TCCCATGAGG GAGAAACTGC GTACATCCGC GTAAAGGTGG ACGGACCCCG CAGTCCAAGC TATGGAAGAT CAAGGTCAAG GAGCCGCAGT CGCAGCAGGA GTCGCAGCCG CAGCAACAAC CGTAGCCGAA GCTACTCTCC ACGCCGCAGC CGAGGATCCC CGCAGTACTC GCCACGTCAT AGCCGTTCCC GCTCTCGCTC CTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa20305 |
Clone ID Related Accession (Same CDS sequence) |
XM_005157414.3
, XM_005157415.3
, XM_005157415.4
, XM_005157414.4
|
Accession Version |
XM_005157415.3 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 774bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-06-23 |
Organism |
Danio rerio(Zebrafish) |
Product |
serine/arginine-rich splicing factor 1A isoform X1 |
Comment |
MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 24, 2016 this sequence version replaced XM_005157415.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGTGGTG GTGGGGCTCC TAGAGGTAGA TATGGACCCC CATCCAGACG TTCAGAGTAC AGAGTAATTG TTTCAGGACT TCCACCAAGC GGCAGCTGGC AGGATCTGAA GGATCACATG CGTGAAGCAG GTGATGTATG TTACGCTGAC GTTTTCCGAG ATGGAACTGG TGTGGTGGAG TTTGTTCGCA AAGAGGACAT GACCTACGCC GTTCGCAAAC TGGATAACAC AAAATTCCGG TCCCATGAGG GAGAAACTGC GTACATCCGC GTAAAGGTGG ACGGACCCCG CAGTCCAAGC TATGGAAGAT CAAGGTCAAG GAGCCGCAGT CGCAGCAGGA GTCGCAGCCG CAGCAACAAC CGTAGCCGAA GCTACTCTCC ACGCCGCAGC CGAGGATCCC CGCAGTACTC GCCACGTCAT AGCCGTTCCC GCTCTCGCTC CTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005157472.1 |
CDS | 187..960 |
Translation | |
Target ORF information:
RefSeq Version | XM_005157415.3 |
Organism | Danio rerio(Zebrafish) |
Definition | Danio rerio serine/arginine-rich splicing factor 1a (srsf1a), transcript variant X2, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005157415.3 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGTGGTG GTGGGGCTCC TAGAGGTAGA TATGGACCCC CATCCAGACG TTCAGAGTAC AGAGTAATTG TTTCAGGACT TCCACCAAGC GGCAGCTGGC AGGATCTGAA GGATCACATG CGTGAAGCAG GTGATGTATG TTACGCTGAC GTTTTCCGAG ATGGAACTGG TGTGGTGGAG TTTGTTCGCA AAGAGGACAT GACCTACGCC GTTCGCAAAC TGGATAACAC AAAATTCCGG TCCCATGAGG GAGAAACTGC GTACATCCGC GTAAAGGTGG ACGGACCCCG CAGTCCAAGC TATGGAAGAT CAAGGTCAAG GAGCCGCAGT CGCAGCAGGA GTCGCAGCCG CAGCAACAAC CGTAGCCGAA GCTACTCTCC ACGCCGCAGC CGAGGATCCC CGCAGTACTC GCCACGTCAT AGCCGTTCCC GCTCTCGCTC CTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa20305 |
Clone ID Related Accession (Same CDS sequence) |
XM_005157414.3
, XM_005157415.3
, XM_005157415.4
, XM_005157414.4
|
Accession Version |
XM_005157415.4 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 774bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2017-06-14 |
Organism |
Danio rerio(zebrafish) |
Product |
serine/arginine-rich splicing factor 1A isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 15, 2017 this sequence version replaced XM_005157415.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGTGGTG GTGGGGCTCC TAGAGGTAGA TATGGACCCC CATCCAGACG TTCAGAGTAC AGAGTAATTG TTTCAGGACT TCCACCAAGC GGCAGCTGGC AGGATCTGAA GGATCACATG CGTGAAGCAG GTGATGTATG TTACGCTGAC GTTTTCCGAG ATGGAACTGG TGTGGTGGAG TTTGTTCGCA AAGAGGACAT GACCTACGCC GTTCGCAAAC TGGATAACAC AAAATTCCGG TCCCATGAGG GAGAAACTGC GTACATCCGC GTAAAGGTGG ACGGACCCCG CAGTCCAAGC TATGGAAGAT CAAGGTCAAG GAGCCGCAGT CGCAGCAGGA GTCGCAGCCG CAGCAACAAC CGTAGCCGAA GCTACTCTCC ACGCCGCAGC CGAGGATCCC CGCAGTACTC GCCACGTCAT AGCCGTTCCC GCTCTCGCTC CTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005157472.1 |
CDS | 187..960 |
Translation | |
Target ORF information:
RefSeq Version | XM_005157415.4 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio serine/arginine-rich splicing factor 1a (srsf1a), transcript variant X2, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005157415.4 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGTGGTG GTGGGGCTCC TAGAGGTAGA TATGGACCCC CATCCAGACG TTCAGAGTAC AGAGTAATTG TTTCAGGACT TCCACCAAGC GGCAGCTGGC AGGATCTGAA GGATCACATG CGTGAAGCAG GTGATGTATG TTACGCTGAC GTTTTCCGAG ATGGAACTGG TGTGGTGGAG TTTGTTCGCA AAGAGGACAT GACCTACGCC GTTCGCAAAC TGGATAACAC AAAATTCCGG TCCCATGAGG GAGAAACTGC GTACATCCGC GTAAAGGTGG ACGGACCCCG CAGTCCAAGC TATGGAAGAT CAAGGTCAAG GAGCCGCAGT CGCAGCAGGA GTCGCAGCCG CAGCAACAAC CGTAGCCGAA GCTACTCTCC ACGCCGCAGC CGAGGATCCC CGCAGTACTC GCCACGTCAT AGCCGTTCCC GCTCTCGCTC CTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa20305 |
Clone ID Related Accession (Same CDS sequence) |
XM_005157414.3
, XM_005157415.3
, XM_005157415.4
, XM_005157414.4
|
Accession Version |
XM_005157414.4 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 774bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2017-06-14 |
Organism |
Danio rerio(zebrafish) |
Product |
serine/arginine-rich splicing factor 1A isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 15, 2017 this sequence version replaced XM_005157414.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGTGGTG GTGGGGCTCC TAGAGGTAGA TATGGACCCC CATCCAGACG TTCAGAGTAC AGAGTAATTG TTTCAGGACT TCCACCAAGC GGCAGCTGGC AGGATCTGAA GGATCACATG CGTGAAGCAG GTGATGTATG TTACGCTGAC GTTTTCCGAG ATGGAACTGG TGTGGTGGAG TTTGTTCGCA AAGAGGACAT GACCTACGCC GTTCGCAAAC TGGATAACAC AAAATTCCGG TCCCATGAGG GAGAAACTGC GTACATCCGC GTAAAGGTGG ACGGACCCCG CAGTCCAAGC TATGGAAGAT CAAGGTCAAG GAGCCGCAGT CGCAGCAGGA GTCGCAGCCG CAGCAACAAC CGTAGCCGAA GCTACTCTCC ACGCCGCAGC CGAGGATCCC CGCAGTACTC GCCACGTCAT AGCCGTTCCC GCTCTCGCTC CTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005157471.1 |
CDS | 139..912 |
Translation | |
Target ORF information:
RefSeq Version | XM_005157414.4 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio serine/arginine-rich splicing factor 1a (srsf1a), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005157414.4 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCCGGTG GTGTGATCCG CGGCCCTGCT GGAAGCAACG ATTGCCGCAT CTATGTGGGA AACCTGCCGC CCGATATTCG CACCAAAGAT GTCGAAGATG TGTTTTATAA GTACGGAGCC ATCCGAGACA TCGATCTGAA AAACCGACGA GGCGGACCTC CATTCGCCTT TGTCGAGTTT GAAGACCCCA GAGATGCAGA GGATGCTGTT TATGCTCGTG ATGGCTATGA CTATGATGGC TATCGACTTC GAGTGGAATT TCCTAGGAGT GGACGAGGAA TGGGCAGAGG AGGTTTTGGT GGGGGTGGTG GAGGCGGTGG CGGCGGAGGA GGAGGTGGTG GTGGGGCTCC TAGAGGTAGA TATGGACCCC CATCCAGACG TTCAGAGTAC AGAGTAATTG TTTCAGGACT TCCACCAAGC GGCAGCTGGC AGGATCTGAA GGATCACATG CGTGAAGCAG GTGATGTATG TTACGCTGAC GTTTTCCGAG ATGGAACTGG TGTGGTGGAG TTTGTTCGCA AAGAGGACAT GACCTACGCC GTTCGCAAAC TGGATAACAC AAAATTCCGG TCCCATGAGG GAGAAACTGC GTACATCCGC GTAAAGGTGG ACGGACCCCG CAGTCCAAGC TATGGAAGAT CAAGGTCAAG GAGCCGCAGT CGCAGCAGGA GTCGCAGCCG CAGCAACAAC CGTAGCCGAA GCTACTCTCC ACGCCGCAGC CGAGGATCCC CGCAGTACTC GCCACGTCAT AGCCGTTCCC GCTCTCGCTC CTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J |