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sugt1 cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol sugt1
Entrez Gene ID 492489
Full Name SGT1 homolog, MIS12 kinetochore complex assembly cochaperone
Synonyms sgut1,wu:fd45a02,zgc:103668
General protein information
Preferred Names

SGT1 homolog, MIS12 kinetochore complex assembly cochaperone

Names

protein SGT1 homolog
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_021473696.1 XP_021329371.1 protein SGT1 homolog isoform X1
NM_001007361.1 NP_001007362.1 protein SGT1 homolog

Pathways from BioSystems


Homologies


Pan troglodytes (chimpanzee) SUGT1 XP_003952448.1
Arabidopsis thaliana (thale cress) SGT1A NP_849429.1
Oryza sativa (rice) Os01g0624500 NP_001043620.1
Canis lupus familiaris (dog) SUGT1 XP_005633996.1
Mus musculus (house mouse) Sugt1 NP_080750.1
Rattus norvegicus (Norway rat) Sugt1 NP_001013069.1
Arabidopsis thaliana (thale cress) SGT1B NP_192865.1
Bos taurus (cattle) SUGT1 NP_001039668.1
Anopheles gambiae (African malaria mosquito) AgaP_AGAP006161 XP_316219.4
Xenopus tropicalis (tropical clawed frog) sugt1 NP_001016156.1
Homo sapiens (human) SUGT1 NP_001124384.1
SUGT1 XP_001084394.1
Gallus gallus (chicken) SUGT1 NP_001025994.2
Danio rerio (zebrafish) sgut1 NP_001007362.1
Drosophila melanogaster (fruit fly) Sgt1 NP_649783.2
Caenorhabditis elegans (roundworm) CELE_D1054.3 NP_505751.1

Gene Ontology


Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following sugt1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the sugt1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa31516 NM_001007361.1
Latest version!		 Danio rerio SGT1 homolog, MIS12 kinetochore complex assembly cochaperone (sugt1), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00
ODa147238 XM_021473696.1
Latest version!		 Danio rerio SGT1 homolog, MIS12 kinetochore complex assembly cochaperone (sgut1), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 9-11 $174.30
$249.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa31516
Clone ID Related Accession (Same CDS sequence) NM_001007361.1
Accession Version NM_001007361.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 969bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-01-17
Organism Danio rerio(zebrafish)
Product protein SGT1 homolog
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC085582.1. ##Evidence-Data-START## Transcript exon combination :: BC085582.1, BC164350.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGCAACTT GCGGGCGTTA CTCTGACAGT TTCATAGATG AGGATCCTAG GAGGGCCCTT 
GAGGAACTAA ATGAAGCATT GGGAGAGAAA GCAGATAATG CTGAATGGCT CTGCCAGCGA 
GCTTATGCCT ATATTCTGTT GAAAGAGTAC ACCAAAGCAA TTGATGATGC CAAGAAAGCC 
CAAGACCTGC AGCCAGGACT AGCACTTCCC TTTCTAAGAA TAGGAATTGC AGAGTATCAC 
CTACATAACT TTGTCGCTGC TCATCAGGCC CTCACAGCAG GAAGAGACCT TGACAGTTCT 
GTTGAAGAAT TTCAAACATG GATGCAGCAC TGTGAAACTG AAATGGCGAC ACACATTCCA 
AACAAAACTT CAGATTTGCA AACTACAACC CATGTCAAAC ATGATTGGTA CCAGACAGAG 
TCTCAAGTTG CAGTTACCAT CATGGTAAAA AATGCCAAGA AGGAGGGTGT GATTGTCAGC 
TTTGGCGAAA GGGAGTTGAC CGCTGTGGTA AAGCTTCCAT CAGGAGAGGA TTATTGTCTG 
AAGGTTCATC TTCTTCATCC TATTGTCCCA CAGCAGAGCA CATACAAGAT CCTTTCAACC 
AAGATAGAGA TTAAGATGAA GAAGACTGAA GCCATACAGT GGGAAAAACT TCAAGGAGAA 
GAGACACTCT CCAACGTGAA GCATTTTACT GCAAGCCAGT ATCCATCGTC ATCCCACTAC 
ACACGAAACT GGGACAAGTT AGTGGGAGAA ATAAAGGAGG AGGAAAAGAA GGAAAATCTG 
GAGGGTGATG CTGCTCTCAA CAAGCTTTTT CAACAGATCT ATTCGGATGG CTCGGATGAT 
GTCAGACGGG CAATGAACAA GTCTTTTATG GAATCAGGAG GCACTGTCCT CAGCACCAAC 
TGGATAGATG TTGGTAAACG GAAAGTAGAG ATGAACCCGC CTGATGACGT AGAGTGGAAA 
AAATATTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001007362.1
CDS105..1073
Translation

Target ORF information:

RefSeq Version NM_001007361.1
Organism Danio rerio(zebrafish)
Definition Danio rerio SGT1 homolog, MIS12 kinetochore complex assembly cochaperone (sugt1), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001007361.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGCAACTT GCGGGCGTTA CTCTGACAGT TTCATAGATG AGGATCCTAG GAGGGCCCTT 
GAGGAACTAA ATGAAGCATT GGGAGAGAAA GCAGATAATG CTGAATGGCT CTGCCAGCGA 
GCTTATGCCT ATATTCTGTT GAAAGAGTAC ACCAAAGCAA TTGATGATGC CAAGAAAGCC 
CAAGACCTGC AGCCAGGACT AGCACTTCCC TTTCTAAGAA TAGGAATTGC AGAGTATCAC 
CTACATAACT TTGTCGCTGC TCATCAGGCC CTCACAGCAG GAAGAGACCT TGACAGTTCT 
GTTGAAGAAT TTCAAACATG GATGCAGCAC TGTGAAACTG AAATGGCGAC ACACATTCCA 
AACAAAACTT CAGATTTGCA AACTACAACC CATGTCAAAC ATGATTGGTA CCAGACAGAG 
TCTCAAGTTG CAGTTACCAT CATGGTAAAA AATGCCAAGA AGGAGGGTGT GATTGTCAGC 
TTTGGCGAAA GGGAGTTGAC CGCTGTGGTA AAGCTTCCAT CAGGAGAGGA TTATTGTCTG 
AAGGTTCATC TTCTTCATCC TATTGTCCCA CAGCAGAGCA CATACAAGAT CCTTTCAACC 
AAGATAGAGA TTAAGATGAA GAAGACTGAA GCCATACAGT GGGAAAAACT TCAAGGAGAA 
GAGACACTCT CCAACGTGAA GCATTTTACT GCAAGCCAGT ATCCATCGTC ATCCCACTAC 
ACACGAAACT GGGACAAGTT AGTGGGAGAA ATAAAGGAGG AGGAAAAGAA GGAAAATCTG 
GAGGGTGATG CTGCTCTCAA CAAGCTTTTT CAACAGATCT ATTCGGATGG CTCGGATGAT 
GTCAGACGGG CAATGAACAA GTCTTTTATG GAATCAGGAG GCACTGTCCT CAGCACCAAC 
TGGATAGATG TTGGTAAACG GAAAGTAGAG ATGAACCCGC CTGATGACGT AGAGTGGAAA 
AAATATTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa147238
Clone ID Related Accession (Same CDS sequence) XM_021473696.1
Accession Version XM_021473696.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 648bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product protein SGT1 homolog isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
ATGCAGCACT GTGAAACTGA AATGGCGACA CACATTCCAA ACAAAACTTC AGATTTGCAA 
ACTACAACCC ATGTCAAACA TGATTGGTAC CAGACAGAGT CTCAAGTTGC AGTTACCATC 
ATGGTAAAAA ATGCCAAGAA GGAGGGTGTG ATTGTCAGCT TTGGCGAAAG GGAGTTGACC 
GCTGTGGTAA AGCTTCCATC AGGAGAGGAT TATTGTCTGA AGGTTCATCT TCTTCATCCT 
ATTGTCCCAC AGCAGAGCAC ATACAAGATC CTTTCAACCA AGATAGAGAT TAAGATGAAG 
AAGACTGAAG CCATACAGTG GGAAAAACTT CAAGGAGAAG AGACACTCTC CAACGTGAAG 
CATTTTACTG CAAGCCAGTA TCCATCGTCA TCCCACTACA CACGAAACTG GGACAAGTTA 
GTGGGAGAAA TAAAGGAGGA GGAAAAGAAG GAAAATCTGG AGGGTGATGC TGCTCTCAAC 
AAGCTTTTTC AACAGATCTA TTCGGATGGC TCGGATGATG TCAGACGGGC AATGAACAAG 
TCTTTTATGG AATCAGGAGG CACTGTCCTC AGCACCAACT GGATAGATGT TGGTAAACGG 
AAAGTAGAGA TGAACCCGCC TGATGACGTA GAGTGGAAAA AATATTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_021329371.1
CDS366..1013
Translation

Target ORF information:

RefSeq Version XM_021473696.1
Organism Danio rerio(zebrafish)
Definition Danio rerio SGT1 homolog, MIS12 kinetochore complex assembly cochaperone (sgut1), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_021473696.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
ATGCAGCACT GTGAAACTGA AATGGCGACA CACATTCCAA ACAAAACTTC AGATTTGCAA 
ACTACAACCC ATGTCAAACA TGATTGGTAC CAGACAGAGT CTCAAGTTGC AGTTACCATC 
ATGGTAAAAA ATGCCAAGAA GGAGGGTGTG ATTGTCAGCT TTGGCGAAAG GGAGTTGACC 
GCTGTGGTAA AGCTTCCATC AGGAGAGGAT TATTGTCTGA AGGTTCATCT TCTTCATCCT 
ATTGTCCCAC AGCAGAGCAC ATACAAGATC CTTTCAACCA AGATAGAGAT TAAGATGAAG 
AAGACTGAAG CCATACAGTG GGAAAAACTT CAAGGAGAAG AGACACTCTC CAACGTGAAG 
CATTTTACTG CAAGCCAGTA TCCATCGTCA TCCCACTACA CACGAAACTG GGACAAGTTA 
GTGGGAGAAA TAAAGGAGGA GGAAAAGAAG GAAAATCTGG AGGGTGATGC TGCTCTCAAC 
AAGCTTTTTC AACAGATCTA TTCGGATGGC TCGGATGATG TCAGACGGGC AATGAACAAG 
TCTTTTATGG AATCAGGAGG CACTGTCCTC AGCACCAACT GGATAGATGT TGGTAAACGG 
AAAGTAGAGA TGAACCCGCC TGATGACGTA GAGTGGAAAA AATATTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J