Gene Symbol | nptx2a |
Entrez Gene ID | 553230 |
Full Name | neuronal pentraxin 2a |
Synonyms | nptx2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » nptx2a cDNA ORF clone
Gene Symbol | nptx2a |
Entrez Gene ID | 553230 |
Full Name | neuronal pentraxin 2a |
Synonyms | nptx2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_005164292.4 | XP_005164349.1 | neuronal pentraxin 2a isoform X2 |
XM_017354218.1 | XP_017209707.1 | neuronal pentraxin 2a isoform X3 |
NM_001109768.1 | NP_001103238.1 | neuronal pentraxin 2a precursor |
XM_009299887.2 | XP_009298162.1 | neuronal pentraxin 2a isoform X4 |
XM_017354218.2 | XP_017209707.1 | neuronal pentraxin 2a isoform X3 |
XM_005164291.3 | XP_005164348.1 | neuronal pentraxin 2a isoform X1 |
XM_005164291.4 | XP_005164348.1 | neuronal pentraxin 2a isoform X1 |
XM_005164292.3 | XP_005164349.1 | neuronal pentraxin 2a isoform X2 |
XM_009299887.3 | XP_009298162.1 | neuronal pentraxin 2a isoform X4 |
Homo sapiens (human) | NPTX2 | NP_002514.1 |
Bos taurus (cattle) | NPTX2 | XP_002698264.1 |
NPTX2 | XP_001111081.2 | |
Rattus norvegicus (Norway rat) | Nptx2 | NP_001029371.1 |
Gallus gallus (chicken) | NPTX2 | XP_414750.3 |
Mus musculus (house mouse) | Nptx2 | NP_058069.1 |
Danio rerio (zebrafish) | nptx2a | NP_001103238.1 |
Danio rerio (zebrafish) | nptx2b | NP_001165055.1 |
Pan troglodytes (chimpanzee) | NPTX2 | XP_001136152.2 |
Canis lupus familiaris (dog) | NPTX2 | XP_003639131.1 |
Xenopus tropicalis (tropical clawed frog) | nptx2 | NP_001096304.1 |
Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
Reduced synaptic density and deficient locomotor response in neuronal activity-regulated pentraxin 2a mutant zebrafish.
Elbaz I, Lerer-Goldshtein T, Okamoto H, Appelbaum L
FASEB journal : official publication of the Federation of American Societies for Experimental Biology29(4)1220-34(2015 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
characterized the expression of nptx2a in larvae and adults and established a transcription activator-like effector nuclease (TALEN)-mediated nptx2a mutant (nptx2a(-/-)) to study the role of Nptx2a in regulating structural synaptic plasticity and behavior
Title: Reduced synaptic density and deficient locomotor response in neuronal activity-regulated pentraxin 2a mutant zebrafish.
The following nptx2a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the nptx2a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa04585 | |
Clone ID Related Accession (Same CDS sequence) | NM_001109768.1 | |
Accession Version | NM_001109768.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1299bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-01-26 | |
Organism | Danio rerio(zebrafish) | |
Product | neuronal pentraxin 2a precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC115228.1. On Oct 7, 2007 this sequence version replaced XM_682915.2. ##Evidence-Data-START## Transcript exon combination :: BC115228.1 [ECO:0000332] ##Evidence-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001103238.1 |
CDS | 507..1805 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001109768.1 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa08964 | |
Clone ID Related Accession (Same CDS sequence) | XM_005164291.3 , XM_005164291.4 | |
Accession Version | XM_005164291.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1305bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | neuronal pentraxin 2a isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005164291.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005164348.1 |
CDS | 951..2255 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005164291.3 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa08964 | |
Clone ID Related Accession (Same CDS sequence) | XM_005164291.3 , XM_005164291.4 | |
Accession Version | XM_005164291.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1305bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | neuronal pentraxin 2a isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005164291.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005164348.1 |
CDS | 1223..2527 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005164291.4 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa08965 | |
Clone ID Related Accession (Same CDS sequence) | XM_005164292.4 , XM_005164292.3 | |
Accession Version | XM_005164292.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1302bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | neuronal pentraxin 2a isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005164292.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005164349.1 |
CDS | 1222..2523 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005164292.4 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa08965 | |
Clone ID Related Accession (Same CDS sequence) | XM_005164292.4 , XM_005164292.3 | |
Accession Version | XM_005164292.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1302bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | neuronal pentraxin 2a isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005164292.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005164349.1 |
CDS | 951..2252 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005164292.3 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa41825 | |
Clone ID Related Accession (Same CDS sequence) | XM_009299887.2 , XM_009299887.3 | |
Accession Version | XM_009299887.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 705bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | neuronal pentraxin 2a isoform X4 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009299887.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009298162.1 |
CDS | 951..1655 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009299887.2 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa41825 | |
Clone ID Related Accession (Same CDS sequence) | XM_009299887.2 , XM_009299887.3 | |
Accession Version | XM_009299887.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 705bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | neuronal pentraxin 2a isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009299887.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009298162.1 |
CDS | 1229..1933 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009299887.3 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa58048 | |
Clone ID Related Accession (Same CDS sequence) | XM_017354218.1 , XM_017354218.2 | |
Accession Version | XM_017354218.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 708bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | neuronal pentraxin 2a isoform X3 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017209707.1 |
CDS | 951..1658 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017354218.1 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa58048 | |
Clone ID Related Accession (Same CDS sequence) | XM_017354218.1 , XM_017354218.2 | |
Accession Version | XM_017354218.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 708bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | neuronal pentraxin 2a isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017354218.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017209707.1 |
CDS | 1232..1939 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017354218.2 |
1 | ATGAGAGCTT TATTTGTGGC ACTGCTGCTT GTTTACGCGT CAGGGAGCGG GAAAGTGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Evolution of complexity in the zebrafish synapse proteome. |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
RFX transcription factors are essential for hearing in mice. |
Reduced synaptic density and deficient locomotor response in neuronal activity-regulated pentraxin 2a mutant zebrafish. |