Gene Symbol | pou2f3 |
Entrez Gene ID | 553427 |
Full Name | POU class 2 homeobox 3 |
Synonyms | zgc:136377,zgc:158534 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » pou2f3 cDNA ORF clone
gRNAs
Gene Symbol | pou2f3 |
Entrez Gene ID | 553427 |
Full Name | POU class 2 homeobox 3 |
Synonyms | zgc:136377,zgc:158534 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_005171993.3 | XP_005172050.1 | POU domain, class 2, transcription factor 3 isoform X1 |
XM_017356085.1 | XP_017211574.1 | POU domain, class 2, transcription factor 3 isoform X2 |
XM_005171994.3 | XP_005172051.1 | POU domain, class 2, transcription factor 3 isoform X1 |
XM_005171994.4 | XP_005172051.1 | POU domain, class 2, transcription factor 3 isoform X1 |
NM_001199683.1 | NP_001186612.1 | POU domain, class 2, transcription factor 3 isoform 1 |
XM_017356085.2 | XP_017211574.1 | POU domain, class 2, transcription factor 3 isoform X2 |
NM_001045255.2 | NP_001038720.2 | POU domain, class 2, transcription factor 3 isoform 2 |
XM_005171993.4 | XP_005172050.1 | POU domain, class 2, transcription factor 3 isoform X1 |
Homo sapiens (human) | POU2F3 | NP_055167.2 |
Bos taurus (cattle) | POU2F3 | NP_001192759.1 |
Mus musculus (house mouse) | Pou2f3 | NP_035269.2 |
Danio rerio (zebrafish) | pou2f3 | NP_001038720.2 |
Xenopus tropicalis (tropical clawed frog) | pou2f3 | XP_002935067.2 |
Pan troglodytes (chimpanzee) | POU2F3 | XP_001151894.3 |
Gallus gallus (chicken) | POU2F3 | XP_425799.4 |
POU2F3 | XP_001100709.2 | |
Canis lupus familiaris (dog) | POU2F3 | XP_005619723.1 |
Rattus norvegicus (Norway rat) | Pou2f3 | NP_001099215.1 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following pou2f3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the pou2f3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa30675 | |
Clone ID Related Accession (Same CDS sequence) | XM_017356085.1 , XM_017356085.2 , NM_001045255.2 | |
Accession Version | NM_001045255.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1194bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-07 | |
Organism | Danio rerio(zebrafish) | |
Product | POU domain, class 2, transcription factor 3 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CT955996.8. On or before Dec 12, 2010 this sequence version replaced XM_002662147.1, NM_001045255.1. Transcript Variant: This variant (2) uses two alternate splice sites in the coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC116523.1, GFIL01030985.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001038720.2 |
CDS | 118..1311 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa30760 | |
Clone ID Related Accession (Same CDS sequence) | NM_001199683.1 | |
Accession Version | NM_001199683.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1197bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-07 | |
Organism | Danio rerio(zebrafish) | |
Product | POU domain, class 2, transcription factor 3 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CT955996.8. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC129274.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN06350654, SAMN06645146 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001186612.1 |
CDS | 118..1314 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa11040 | |
Clone ID Related Accession (Same CDS sequence) | XM_005171993.3 , XM_005171994.3 , XM_005171994.4 , XM_005171993.4 | |
Accession Version | XM_005171993.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1200bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | POU domain, class 2, transcription factor 3 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005171993.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005172050.1 |
CDS | 286..1485 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa11040 | |
Clone ID Related Accession (Same CDS sequence) | XM_005171993.3 , XM_005171994.3 , XM_005171994.4 , XM_005171993.4 | |
Accession Version | XM_005171994.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1200bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | POU domain, class 2, transcription factor 3 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005171994.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005172051.1 |
CDS | 197..1396 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa11040 | |
Clone ID Related Accession (Same CDS sequence) | XM_005171993.3 , XM_005171994.3 , XM_005171994.4 , XM_005171993.4 | |
Accession Version | XM_005171994.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1200bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | POU domain, class 2, transcription factor 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005171994.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005172051.1 |
CDS | 228..1427 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa11040 | |
Clone ID Related Accession (Same CDS sequence) | XM_005171993.3 , XM_005171994.3 , XM_005171994.4 , XM_005171993.4 | |
Accession Version | XM_005171993.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1200bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | POU domain, class 2, transcription factor 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005171993.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005172050.1 |
CDS | 287..1486 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa30675 | |
Clone ID Related Accession (Same CDS sequence) | XM_017356085.1 , XM_017356085.2 , NM_001045255.2 | |
Accession Version | XM_017356085.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1194bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | POU domain, class 2, transcription factor 3 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017211574.1 |
CDS | 195..1388 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa30675 | |
Clone ID Related Accession (Same CDS sequence) | XM_017356085.1 , XM_017356085.2 , NM_001045255.2 | |
Accession Version | XM_017356085.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1194bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | POU domain, class 2, transcription factor 3 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017356085.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017211574.1 |
CDS | 226..1419 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGCACAG ACGCTGTTGA GCAGACAGAA TCTCAGCATG AACAAGCTGA CATTGAACAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
RFX transcription factors are essential for hearing in mice. |