Gene Symbol | SI:CH211-239E6.4 |
Entrez Gene ID | 563220 |
Full Name | si:ch211-239e6.4 |
Synonyms | cdpf1,zgc:136265,zgc:152667 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
ORF » Species Summary » Danio rerio » SI:CH211-239E6.4 cDNA ORF clone
Gene Symbol | SI:CH211-239E6.4 |
Entrez Gene ID | 563220 |
Full Name | si:ch211-239e6.4 |
Synonyms | cdpf1,zgc:136265,zgc:152667 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_005164751.4 | XP_005164808.1 | cysteine-rich DPF motif domain-containing protein 1 isoform X1 |
NM_001076762.2 | NP_001070230.2 | cysteine-rich DPF motif domain-containing protein 1 isoform 2 |
XM_005164751.3 | XP_005164808.1 | cysteine-rich DPF motif domain-containing protein 1 isoform X1 |
NM_001025527.2 | NP_001020698.1 | cysteine-rich DPF motif domain-containing protein 1 isoform 1 |
XM_017355038.1 | XP_017210527.1 | cysteine-rich DPF motif domain-containing protein 1 isoform X2 |
Homo sapiens (human) | CDPF1 | NP_997210.3 |
Mus musculus (house mouse) | Cdpf1 | NP_001158098.1 |
Gallus gallus (chicken) | C1H22ORF40 | NP_001025943.1 |
Pan troglodytes (chimpanzee) | CDPF1 | XP_003953958.1 |
Canis lupus familiaris (dog) | CDPF1 | XP_005625802.1 |
CDPF1 | XP_001110941.2 | |
Danio rerio (zebrafish) | si:ch211-239e6.4 | NP_001020698.1 |
Xenopus tropicalis (tropical clawed frog) | cdpf1 | XP_004912368.1 |
Bos taurus (cattle) | CDPF1 | NP_001069561.1 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following SI:CH211-239E6.4 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SI:CH211-239E6.4 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa09379 | |
Clone ID Related Accession (Same CDS sequence) | XM_005164751.4 , XM_005164751.3 , NM_001025527.2 | |
Accession Version | NM_001025527.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 351bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-23 | |
Organism | Danio rerio(zebrafish) | |
Product | cysteine-rich DPF motif domain-containing protein 1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH433269.1 and EH448440.1. On Mar 16, 2008 this sequence version replaced NM_001025527.1. ##Evidence-Data-START## Transcript exon combination :: EH452292.1, EH433269.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGATTTGA CGGAAGGCTC CGCGCTCGGC GTGTTCAGCT GCCAGCTGTG CGAGGTTTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001020698.1 |
CDS | 117..467 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001025527.2 |
1 | ATGGATTTGA CGGAAGGCTC CGCGCTCGGC GTGTTCAGCT GCCAGCTGTG CGAGGTTTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa38779 | |
Clone ID Related Accession (Same CDS sequence) | NM_001076762.2 | |
Accession Version | NM_001076762.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 264bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-22 | |
Organism | Danio rerio(zebrafish) | |
Product | cysteine-rich DPF motif domain-containing protein 1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH433269.1 and BC115061.1. On Mar 16, 2008 this sequence version replaced NM_001076762.1. ##Evidence-Data-START## Transcript exon combination :: BC115061.1, EH550141.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGATTTGA CGGAAGGCTC CGCGCTCGGC GTGTTCAGCT GCCAGCTGTG CGAGGTTTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001070230.2 |
CDS | 117..380 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001076762.2 |
1 | ATGGATTTGA CGGAAGGCTC CGCGCTCGGC GTGTTCAGCT GCCAGCTGTG CGAGGTTTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa09379 | |
Clone ID Related Accession (Same CDS sequence) | XM_005164751.4 , XM_005164751.3 , NM_001025527.2 | |
Accession Version | XM_005164751.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 351bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | cysteine-rich DPF motif domain-containing protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007115.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005164751.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATTTGA CGGAAGGCTC CGCGCTCGGC GTGTTCAGCT GCCAGCTGTG CGAGGTTTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005164808.1 |
CDS | 139..489 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005164751.4 |
1 | ATGGATTTGA CGGAAGGCTC CGCGCTCGGC GTGTTCAGCT GCCAGCTGTG CGAGGTTTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa09379 | |
Clone ID Related Accession (Same CDS sequence) | XM_005164751.4 , XM_005164751.3 , NM_001025527.2 | |
Accession Version | XM_005164751.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 351bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | cysteine-rich DPF motif domain-containing protein 1 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007115.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005164751.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATTTGA CGGAAGGCTC CGCGCTCGGC GTGTTCAGCT GCCAGCTGTG CGAGGTTTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005164808.1 |
CDS | 132..482 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005164751.3 |
1 | ATGGATTTGA CGGAAGGCTC CGCGCTCGGC GTGTTCAGCT GCCAGCTGTG CGAGGTTTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa09380 | |
Clone ID Related Accession (Same CDS sequence) | XM_017355038.1 | |
Accession Version | XM_017355038.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 264bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | cysteine-rich DPF motif domain-containing protein 1 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007115.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTTGGAA AGTGGTTGAA AGGGCTCTTG GAGGAATGTT TTGGCATAAA GGACCCCTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017210527.1 |
CDS | 853..1116 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017355038.1 |
1 | ATGGTTGGAA AGTGGTTGAA AGGGCTCTTG GAGGAATGTT TTGGCATAAA GGACCCCTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |