Gene Symbol | si:ch211-163l21.10 |
Entrez Gene ID | 565282 |
Full Name | si:ch211-163l21.10 |
Synonyms | bbof1,ccdc176 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » si:ch211-163l21.10 cDNA ORF clone
gRNAs
Gene Symbol | si:ch211-163l21.10 |
Entrez Gene ID | 565282 |
Full Name | si:ch211-163l21.10 |
Synonyms | bbof1,ccdc176 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_021478284.1 | XP_021333959.1 | basal body-orientation factor 1 isoform X1 |
XM_009303938.2 | XP_009302213.1 | basal body-orientation factor 1 isoform X1 |
XM_009303939.2 | XP_009302214.1 | basal body-orientation factor 1 isoform X2 |
NM_001126419.1 | NP_001119891.1 | basal body-orientation factor 1 |
XM_009303940.2 | XP_009302215.1 | basal body-orientation factor 1 isoform X3 |
XM_021478285.1 | XP_021333960.1 | basal body-orientation factor 1 isoform X2 |
Rattus norvegicus (Norway rat) | Ccdc176 | NP_001128103.1 |
Danio rerio (zebrafish) | si:ch211-163l21.10 | NP_001119891.1 |
Canis lupus familiaris (dog) | CCDC176 | XP_005623713.1 |
Bos taurus (cattle) | CCDC176 | XP_005212180.1 |
Gallus gallus (chicken) | C5H14ORF45 | XP_421259.4 |
Xenopus tropicalis (tropical clawed frog) | ccdc176 | XP_002938641.2 |
Homo sapiens (human) | CCDC176 | NP_079333.2 |
Pan troglodytes (chimpanzee) | CCDC176 | XP_529625.3 |
LOC720051 | XP_001115058.2 | |
Mus musculus (house mouse) | Ccdc176 | NP_082653.2 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following si:ch211-163l21.10 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the si:ch211-163l21.10 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa00159 | |
Clone ID Related Accession (Same CDS sequence) | NM_001126419.1 | |
Accession Version | NM_001126419.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-26 | |
Organism | Danio rerio(zebrafish) | |
Product | basal body-orientation factor 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AL929282.5. On Jul 31, 2008 this sequence version replaced XM_688562.3. ##Evidence-Data-START## Transcript exon combination :: BC124393.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001119891.1 |
CDS | 49..1611 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa44561 | |
Clone ID Related Accession (Same CDS sequence) | XM_009303938.2 | |
Accession Version | XM_009303938.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1566bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | basal body-orientation factor 1 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009303938.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009302213.1 |
CDS | 108..1673 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa44562 | |
Clone ID Related Accession (Same CDS sequence) | XM_009303939.2 | |
Accession Version | XM_009303939.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1422bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | basal body-orientation factor 1 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009303939.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009302214.1 |
CDS | 108..1529 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa44563 | |
Clone ID Related Accession (Same CDS sequence) | XM_009303940.2 | |
Accession Version | XM_009303940.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1341bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | basal body-orientation factor 1 isoform X3 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009303940.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009302215.1 |
CDS | 108..1448 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa143705 | |
Clone ID Related Accession (Same CDS sequence) | XM_021478284.1 | |
Accession Version | XM_021478284.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1419bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | basal body-orientation factor 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021333959.1 |
CDS | 64..1482 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa143706 | |
Clone ID Related Accession (Same CDS sequence) | XM_021478285.1 | |
Accession Version | XM_021478285.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1338bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | basal body-orientation factor 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021333960.1 |
CDS | 64..1401 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCGAAGA AGAAAGGAAA GGGGAAGGGG AAAGGAAAGG GAAAAGGAAA AGGCAAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |