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samd13 cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol samd13
Entrez Gene ID 767772
Full Name sterile alpha motif domain containing 13
Synonyms zgc:153376
General protein information
Preferred Names

sterile alpha motif domain containing 13

Names

sterile alpha motif domain-containing protein 13
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_005172827.2 XP_005172884.1 sterile alpha motif domain-containing protein 13 isoform X1
NM_001168317.1 NP_001161789.1 sterile alpha motif domain-containing protein 13
XM_009305815.1 XP_009304090.1 sterile alpha motif domain-containing protein 13 isoform X1
NM_001076739.2 NP_001070207.1 sterile alpha motif domain-containing protein 13

Pathways from BioSystems


Homologies


Pan troglodytes (chimpanzee) SAMD13 XP_513519.2
LOC713946 XP_001103462.1
Danio rerio (zebrafish) samd13 NP_001070207.1
Xenopus tropicalis (tropical clawed frog) samd13 NP_001107289.1
Homo sapiens (human) SAMD13 NP_001010971.1

Gene Ontology


Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following samd13 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the samd13 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa16748 NM_001076739.2
Latest version!		 Danio rerio sterile alpha motif domain containing 13 (samd13), transcript variant 1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $104.30
$149.00
ODa16748 NM_001168317.1
Latest version!		 Danio rerio sterile alpha motif domain containing 13 (samd13), transcript variant 2, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $104.30
$149.00
ODa16748 XM_005172827.2
Latest version!		 Danio rerio sterile alpha motif domain containing 13 (samd13), transcript variant X2, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $104.30
$149.00
ODa16748 XM_009305815.1
Latest version!		 Danio rerio sterile alpha motif domain containing 13 (samd13), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $104.30
$149.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone 30% OFF
2-4 Clone 40% OFF
5 or more Clone 50% OFF
All Other ORF Clones
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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa16748
Clone ID Related Accession (Same CDS sequence) XM_005172827.2 , NM_001168317.1 , XM_009305815.1 , NM_001076739.2
Accession Version NM_001168317.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 294bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-11-23
Organism Danio rerio(zebrafish)
Product sterile alpha motif domain-containing protein 13
Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CR931978.18, EH512876.1 and BC124335.1. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein. ##Evidence-Data-START## Transcript exon combination :: EE691496.1, EH486480.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. 

1
61
121
181
241
ATGGAAACCA AGGAAAATGG TTCAGTGGAG ACCAAAAATT CTGTGGAGAA TGGGCAGCTT 
ACTGATCCAG CCCACTGGGC CGTAGCGGAT GTGGTCAATT ATTTTAAAGC GACAGGGTTT 
GAGGAGCAAG CCAACGCTTT CCAGGATCAG GAAATCGACG GCAAATCCCT TTTATTAATG 
ACTCGTAACG ACGTTCTGAC CGGACTTTCG ATAAAACTGG GTCCTGCACT GAAGATATAC 
GAGTATCATG TCAAGCCTCT CCAAACCCAA CACTTAAAAA GTAACGTCTC GTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001161789.1
CDS295..588
Translation

Target ORF information:

RefSeq Version NM_001168317.1
Organism Danio rerio(zebrafish)
Definition Danio rerio sterile alpha motif domain containing 13 (samd13), transcript variant 2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001168317.1

ORF Insert Sequence:

1
61
121
181
241
ATGGAAACCA AGGAAAATGG TTCAGTGGAG ACCAAAAATT CTGTGGAGAA TGGGCAGCTT 
ACTGATCCAG CCCACTGGGC CGTAGCGGAT GTGGTCAATT ATTTTAAAGC GACAGGGTTT 
GAGGAGCAAG CCAACGCTTT CCAGGATCAG GAAATCGACG GCAAATCCCT TTTATTAATG 
ACTCGTAACG ACGTTCTGAC CGGACTTTCG ATAAAACTGG GTCCTGCACT GAAGATATAC 
GAGTATCATG TCAAGCCTCT CCAAACCCAA CACTTAAAAA GTAACGTCTC GTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa16748
Clone ID Related Accession (Same CDS sequence) XM_005172827.2 , NM_001168317.1 , XM_009305815.1 , NM_001076739.2
Accession Version NM_001076739.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 294bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-11-23
Organism Danio rerio(zebrafish)
Product sterile alpha motif domain-containing protein 13
Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CR931978.18, CF997862.1, EH512876.1 and BC124335.1. On Dec 1, 2009 this sequence version replaced NM_001076739.1. Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein. ##Evidence-Data-START## Transcript exon combination :: BC124335.1, GFIL01034407.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. 

1
61
121
181
241
ATGGAAACCA AGGAAAATGG TTCAGTGGAG ACCAAAAATT CTGTGGAGAA TGGGCAGCTT 
ACTGATCCAG CCCACTGGGC CGTAGCGGAT GTGGTCAATT ATTTTAAAGC GACAGGGTTT 
GAGGAGCAAG CCAACGCTTT CCAGGATCAG GAAATCGACG GCAAATCCCT TTTATTAATG 
ACTCGTAACG ACGTTCTGAC CGGACTTTCG ATAAAACTGG GTCCTGCACT GAAGATATAC 
GAGTATCATG TCAAGCCTCT CCAAACCCAA CACTTAAAAA GTAACGTCTC GTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001070207.1
CDS298..591
Translation

Target ORF information:

RefSeq Version NM_001076739.2
Organism Danio rerio(zebrafish)
Definition Danio rerio sterile alpha motif domain containing 13 (samd13), transcript variant 1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001076739.2

ORF Insert Sequence:

1
61
121
181
241
ATGGAAACCA AGGAAAATGG TTCAGTGGAG ACCAAAAATT CTGTGGAGAA TGGGCAGCTT 
ACTGATCCAG CCCACTGGGC CGTAGCGGAT GTGGTCAATT ATTTTAAAGC GACAGGGTTT 
GAGGAGCAAG CCAACGCTTT CCAGGATCAG GAAATCGACG GCAAATCCCT TTTATTAATG 
ACTCGTAACG ACGTTCTGAC CGGACTTTCG ATAAAACTGG GTCCTGCACT GAAGATATAC 
GAGTATCATG TCAAGCCTCT CCAAACCCAA CACTTAAAAA GTAACGTCTC GTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa16748
Clone ID Related Accession (Same CDS sequence) XM_005172827.2 , NM_001168317.1 , XM_009305815.1 , NM_001076739.2
Accession Version XM_005172827.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 294bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product sterile alpha motif domain-containing protein 13 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007122.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 24, 2014 this sequence version replaced XM_005172827.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
ATGGAAACCA AGGAAAATGG TTCAGTGGAG ACCAAAAATT CTGTGGAGAA TGGGCAGCTT 
ACTGATCCAG CCCACTGGGC CGTAGCGGAT GTGGTCAATT ATTTTAAAGC GACAGGGTTT 
GAGGAGCAAG CCAACGCTTT CCAGGATCAG GAAATCGACG GCAAATCCCT TTTATTAATG 
ACTCGTAACG ACGTTCTGAC CGGACTTTCG ATAAAACTGG GTCCTGCACT GAAGATATAC 
GAGTATCATG TCAAGCCTCT CCAAACCCAA CACTTAAAAA GTAACGTCTC GTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_005172884.1
CDS313..606
Translation

Target ORF information:

RefSeq Version XM_005172827.2
Organism Danio rerio(zebrafish)
Definition Danio rerio sterile alpha motif domain containing 13 (samd13), transcript variant X2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_005172827.2

ORF Insert Sequence:

1
61
121
181
241
ATGGAAACCA AGGAAAATGG TTCAGTGGAG ACCAAAAATT CTGTGGAGAA TGGGCAGCTT 
ACTGATCCAG CCCACTGGGC CGTAGCGGAT GTGGTCAATT ATTTTAAAGC GACAGGGTTT 
GAGGAGCAAG CCAACGCTTT CCAGGATCAG GAAATCGACG GCAAATCCCT TTTATTAATG 
ACTCGTAACG ACGTTCTGAC CGGACTTTCG ATAAAACTGG GTCCTGCACT GAAGATATAC 
GAGTATCATG TCAAGCCTCT CCAAACCCAA CACTTAAAAA GTAACGTCTC GTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa16748
Clone ID Related Accession (Same CDS sequence) XM_005172827.2 , NM_001168317.1 , XM_009305815.1 , NM_001076739.2
Accession Version XM_009305815.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 294bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product sterile alpha motif domain-containing protein 13 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007122.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
ATGGAAACCA AGGAAAATGG TTCAGTGGAG ACCAAAAATT CTGTGGAGAA TGGGCAGCTT 
ACTGATCCAG CCCACTGGGC CGTAGCGGAT GTGGTCAATT ATTTTAAAGC GACAGGGTTT 
GAGGAGCAAG CCAACGCTTT CCAGGATCAG GAAATCGACG GCAAATCCCT TTTATTAATG 
ACTCGTAACG ACGTTCTGAC CGGACTTTCG ATAAAACTGG GTCCTGCACT GAAGATATAC 
GAGTATCATG TCAAGCCTCT CCAAACCCAA CACTTAAAAA GTAACGTCTC GTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_009304090.1
CDS340..633
Translation

Target ORF information:

RefSeq Version XM_009305815.1
Organism Danio rerio(zebrafish)
Definition Danio rerio sterile alpha motif domain containing 13 (samd13), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_009305815.1

ORF Insert Sequence:

1
61
121
181
241
ATGGAAACCA AGGAAAATGG TTCAGTGGAG ACCAAAAATT CTGTGGAGAA TGGGCAGCTT 
ACTGATCCAG CCCACTGGGC CGTAGCGGAT GTGGTCAATT ATTTTAAAGC GACAGGGTTT 
GAGGAGCAAG CCAACGCTTT CCAGGATCAG GAAATCGACG GCAAATCCCT TTTATTAATG 
ACTCGTAACG ACGTTCTGAC CGGACTTTCG ATAAAACTGG GTCCTGCACT GAAGATATAC 
GAGTATCATG TCAAGCCTCT CCAAACCCAA CACTTAAAAA GTAACGTCTC GTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J


book

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R