Gene Symbol | CFAP36 |
Entrez Gene ID | 112942 |
Full Name | cilia and flagella associated protein 36 |
Synonyms | BARTL1,CCDC104 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome |
ORF » Species Summary » Homo sapiens » CFAP36 cDNA ORF clone
gRNAs
Gene Symbol | CFAP36 |
Entrez Gene ID | 112942 |
Full Name | cilia and flagella associated protein 36 |
Synonyms | BARTL1,CCDC104 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001282761.1 | NP_001269690.1 | cilia- and flagella-associated protein 36 isoform a |
XM_017003254.1 | XP_016858743.1 | cilia- and flagella-associated protein 36 isoform X1 |
XM_011532499.1 | XP_011530801.1 | cilia- and flagella-associated protein 36 isoform X2 |
XM_017003255.1 | XP_016858744.1 | cilia- and flagella-associated protein 36 isoform X1 |
NM_080667.6 | NP_542398.3 | cilia- and flagella-associated protein 36 isoform b |
Mus musculus (house mouse) | Ccdc104 | NP_080016.1 |
Pan troglodytes (chimpanzee) | CCDC104 | XP_515488.3 |
Xenopus tropicalis (tropical clawed frog) | ccdc104 | NP_989091.2 |
Homo sapiens (human) | CCDC104 | NP_542398.3 |
Gallus gallus (chicken) | CCDC104 | NP_001186352.1 |
Canis lupus familiaris (dog) | CCDC104 | XP_531832.1 |
Bos taurus (cattle) | CCDC104 | NP_001029625.1 |
Rattus norvegicus (Norway rat) | Ccdc104 | NP_001020037.1 |
Danio rerio (zebrafish) | ccdc104 | NP_001035412.1 |
The Interaction of CCDC104/BARTL1 with Arl3 and Implications for Ciliary Function.
Lokaj M, K?sling SK, Koerner C, Lange SM, van Beersum SE, van Reeuwijk J, Roepman R, Horn N, Ueffing M, Boldt K, Wittinghofer A
Structure (London, England : 1993)23(11)2122-32(2015 Nov)
Antibody to CCDC104 is associated with a paraneoplastic antibody to CDR2 (anti-Yo).
Totland C, Bredholt G, Haugen M, Haukanes BI, Vedeler CA
Cancer immunology, immunotherapy : CII59(2)231-7(2010 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The association between Yo and CCDC104 antibodies in paraneoplastic neurological syndromes may indicate functional similarities.
Title: Antibody to CCDC104 is associated with a paraneoplastic antibody to CDR2 (anti-Yo).
The following CFAP36 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CFAP36 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu00464 | |
Clone ID Related Accession (Same CDS sequence) | NM_001282761.1 | |
Accession Version | NM_001282761.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1104bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-29 | |
Organism | Homo sapiens(human) | |
Product | cilia- and flagella-associated protein 36 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DB448836.1, AY358097.1, BM980999.1 and BM993564.1. On Sep 19, 2013 this sequence version replaced XM_005264119.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a). ##Evidence-Data-START## Transcript exon combination :: AY358097.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2149178 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCGG AAGAAGAAGA CGAGGTGGAG TGGGTAGTGG AGAGCATCGC GGGGTTCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001269690.1 |
CDS | 208..1311 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCTGCGG AAGAAGAAGA CGAGGTGGAG TGGGTAGTGG AGAGCATCGC GGGGTTCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu00695 | |
Clone ID Related Accession (Same CDS sequence) | NM_080667.6 | |
Accession Version | NM_080667.6 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1029bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Homo sapiens(human) | |
Product | cilia- and flagella-associated protein 36 isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DB448836.1, BC010011.2, BM980999.1 and BM993564.1. On Sep 19, 2013 this sequence version replaced NM_080667.5. Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a. ##Evidence-Data-START## Transcript exon combination :: SRR1803613.87127.1, SRR1803613.283379.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCGG AAGAAGAAGA CGAGGTGGAG TGGGTAGTGG AGAGCATCGC GGGGTTCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_542398.3 |
CDS | 208..1236 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTGCGG AAGAAGAAGA CGAGGTGGAG TGGGTAGTGG AGAGCATCGC GGGGTTCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu74671 | |
Clone ID Related Accession (Same CDS sequence) | XM_017003254.1 , XM_017003255.1 | |
Accession Version | XM_017003254.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 669bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | cilia- and flagella-associated protein 36 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000002.12) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCACTTCT CCTCTTGCAA AGACCCATAC ATCACAGGTG TATTACCTGA CTGCTTAACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016858743.1 |
CDS | 444..1112 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCACTTCT CCTCTTGCAA AGACCCATAC ATCACAGGTG TATTACCTGA CTGCTTAACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu74671 | |
Clone ID Related Accession (Same CDS sequence) | XM_017003254.1 , XM_017003255.1 | |
Accession Version | XM_017003255.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 669bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | cilia- and flagella-associated protein 36 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000002.12) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCACTTCT CCTCTTGCAA AGACCCATAC ATCACAGGTG TATTACCTGA CTGCTTAACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016858744.1 |
CDS | 467..1135 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCACTTCT CCTCTTGCAA AGACCCATAC ATCACAGGTG TATTACCTGA CTGCTTAACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu74672 | |
Clone ID Related Accession (Same CDS sequence) | XM_011532499.1 | |
Accession Version | XM_011532499.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | cilia- and flagella-associated protein 36 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000002.12) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAAATCC TGAGGGAAGT TCTTAGAAAA TCAAAAGAGG AATATGACCA GGAAGAAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011530801.1 |
CDS | 924..1493 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAAATCC TGAGGGAAGT TCTTAGAAAA TCAAAAGAGG AATATGACCA GGAAGAAGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The Interaction of CCDC104/BARTL1 with Arl3 and Implications for Ciliary Function. |
Antibody to CCDC104 is associated with a paraneoplastic antibody to CDR2 (anti-Yo). |