Gene Symbol | YIPF3 |
Entrez Gene ID | 25844 |
Full Name | Yip1 domain family member 3 |
Synonyms | C6orf109,FinGER3,KLIP1,dJ337H4.3 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
ORF » Species Summary » Homo sapiens » YIPF3 cDNA ORF clone
Gene Symbol | YIPF3 |
Entrez Gene ID | 25844 |
Full Name | Yip1 domain family member 3 |
Synonyms | C6orf109,FinGER3,KLIP1,dJ337H4.3 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
mRNA | Protein | Name |
---|---|---|
XM_005248989.4 | XP_005249046.1 | protein YIPF3 isoform X1 |
XM_005248990.2 | XP_005249047.1 | protein YIPF3 isoform X1 |
XM_011514458.2 | XP_011512760.1 | protein YIPF3 isoform X1 |
NM_015388.3 | NP_056203.2 | protein YIPF3 |
NM_015388.4 | NP_056203.2 | protein YIPF3 |
Gallus gallus (chicken) | YIPF3 | NP_001012584.1 |
Bos taurus (cattle) | YIPF3 | NP_001069687.1 |
Homo sapiens (human) | YIPF3 | NP_056203.2 |
YIPF3 | XP_001095575.1 | |
Rattus norvegicus (Norway rat) | Yipf3 | NP_001007802.1 |
Danio rerio (zebrafish) | yipf3 | NP_956201.1 |
Caenorhabditis elegans (roundworm) | Y53C12A.3 | NP_496093.2 |
Pan troglodytes (chimpanzee) | YIPF3 | XP_001138532.2 |
Canis lupus familiaris (dog) | YIPF3 | XP_538938.2 |
Mus musculus (house mouse) | Yipf3 | NP_663328.2 |
Architecture of the human interactome defines protein communities and disease networks.
Huttlin EL, Bruckner RJ, Paulo JA, Cannon JR, Ting L, Baltier K, Colby G, Gebreab F, Gygi MP, Parzen H, Szpyt J, Tam S, Zarraga G, Pontano-Vaites L, Swarup S, White AE, Schweppe DK, Rad R, Erickson BK, Obar RA, Guruharsha KG, Li K, Artavanis-Tsakonas S, Gygi SP, Harper JW
Nature545(7655)505-509(2017 05)
Functional characterisation of the YIPF protein family in mammalian cells.
Kranjc T, Dempsey E, Cagney G, Nakamura N, Shields DC, Simpson JC
Histochemistry and cell biology147(4)439-451(2017 Apr)
YIPF1, YIPF2, and YIPF6 are medial-/trans-Golgi and trans-Golgi network-localized Yip domain family proteins, which play a role in the Golgi reassembly and glycan synthesis.
Soonthornsit J, Sakai N, Sasaki Y, Watanabe R, Osako S, Nakamura N
Experimental cell research353(2)100-108(2017 04)
Characterization of YIPF3 and YIPF4, cis-Golgi Localizing Yip domain family proteins.
Tanimoto K, Suzuki K, Jokitalo E, Sakai N, Sakaguchi T, Tamura D, Fujii G, Aoki K, Takada S, Ishida R, Tanabe M, Itoh H, Yoneda Y, Sohda M, Misumi Y, Nakamura N
Cell structure and function36(2)171-85(2011)
Transcriptome analysis of human gastric cancer.
Oh JH, Yang JO, Hahn Y, Kim MR, Byun SS, Jeon YJ, Kim JM, Song KS, Noh SM, Kim S, Yoo HS, Kim YS, Kim NS
Mammalian genome : official journal of the International Mammalian Genome Society16(12)942-54(2005 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The significance of YIPF3 protein for the maintenance of the morphology of the Golgi was tested by RNA interference, revealing a number of specific morphological changes to this organelle on their depletion.
Title: Functional characterisation of the YIPF protein family in mammalian cells.
Knockdown of YIPF1 and YIPF2, but not that of YIPF6, also reduced intracellular glycans in HT-29 cells. Thus, we confirmed that YIPF1, YIPF2, and YIPF6 play a significant role in supporting normal glycan synthesis
Title: YIPF1, YIPF2, and YIPF6 are medial-/trans-Golgi and trans-Golgi network-localized Yip domain family proteins, which play a role in the Golgi reassembly and glycan synthesis.
YIPF3 is synthesized in the ER as a N-glycosylated form (40 kDa), is then O-glycosylated in the Golgi apparatus to become a lower mobility form (46 kDa) and finally becomes a higher mobility form cleaved at its C-terminal luminal domain (36 kDa).
Title: Characterization of YIPF3 and YIPF4, cis-Golgi Localizing Yip domain family proteins.
identification and characterization of KLIP-1, a novel transmembrane protein whose expression correlates with hematopoietic activity
Title: Characterization of a novel hematopoietic marker expressed from early embryonic hematopoietic stem cells to adult mature lineages.
The following YIPF3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the YIPF3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu40247 | |
Clone ID Related Accession (Same CDS sequence) | XM_005248989.4 , XM_005248990.2 , XM_011514458.2 | |
Accession Version | XM_005248989.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 948bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000006.12) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 6, 2016 this sequence version replaced XM_005248989.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGAACA TGGATGATAC CTCAGGCTCT AGCTTCGAGG ATATGGGTGA GCTGCATCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005249046.1 |
CDS | 325..1272 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005248989.4 |
1 | ATGGAGAACA TGGATGATAC CTCAGGCTCT AGCTTCGAGG ATATGGGTGA GCTGCATCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu40247 | |
Clone ID Related Accession (Same CDS sequence) | XM_005248989.4 , XM_005248990.2 , XM_011514458.2 | |
Accession Version | XM_005248990.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 948bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000006.12) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 3, 2014 this sequence version replaced XM_005248990.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGAACA TGGATGATAC CTCAGGCTCT AGCTTCGAGG ATATGGGTGA GCTGCATCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005249047.1 |
CDS | 330..1277 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005248990.2 |
1 | ATGGAGAACA TGGATGATAC CTCAGGCTCT AGCTTCGAGG ATATGGGTGA GCTGCATCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu40247 | |
Clone ID Related Accession (Same CDS sequence) | XM_005248989.4 , XM_005248990.2 , XM_011514458.2 | |
Accession Version | XM_011514458.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 948bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000006.12) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 6, 2016 this sequence version replaced XM_011514458.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGAACA TGGATGATAC CTCAGGCTCT AGCTTCGAGG ATATGGGTGA GCTGCATCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011512760.1 |
CDS | 432..1379 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011514458.2 |
1 | ATGGAGAACA TGGATGATAC CTCAGGCTCT AGCTTCGAGG ATATGGGTGA GCTGCATCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu06973 | |
Clone ID Related Accession (Same CDS sequence) | NM_015388.3 , NM_015388.4 | |
Accession Version | NM_015388.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1053bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-01 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DC387416.1, BC019297.1 and CA308984.1. On May 7, 2010 this sequence version replaced NM_015388.2. ##Evidence-Data-START## Transcript exon combination :: SRR1163658.382420.1, SRR1163655.480004.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2151119 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCAACTA CAGCGGCGCC GGCGGGCGGC GCCCGAAATG GAGCTGGCCC GGAATGGGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_056203.2 |
CDS | 184..1236 |
Translation |
Target ORF information:
Target ORF information:
|
NM_015388.3 |
1 | ATGGCAACTA CAGCGGCGCC GGCGGGCGGC GCCCGAAATG GAGCTGGCCC GGAATGGGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu06973 | |
Clone ID Related Accession (Same CDS sequence) | NM_015388.3 , NM_015388.4 | |
Accession Version | NM_015388.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1053bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-09 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC019297.1. On Nov 22, 2018 this sequence version replaced NM_015388.3. ##Evidence-Data-START## Transcript exon combination :: BC019297.1, SRR1660803.123200.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2151119 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000372422.7/ ENSP00000361499.2 RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## COMPLETENESS: full length. |
1 | ATGGCAACTA CAGCGGCGCC GGCGGGCGGC GCCCGAAATG GAGCTGGCCC GGAATGGGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_056203.2 |
CDS | 120..1172 |
Translation |
Target ORF information:
Target ORF information:
|
NM_015388.4 |
1 | ATGGCAACTA CAGCGGCGCC GGCGGGCGGC GCCCGAAATG GAGCTGGCCC GGAATGGGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Architecture of the human interactome defines protein communities and disease networks. |
Functional characterisation of the YIPF protein family in mammalian cells. |
YIPF1, YIPF2, and YIPF6 are medial-/trans-Golgi and trans-Golgi network-localized Yip domain family proteins, which play a role in the Golgi reassembly and glycan synthesis. |
Characterization of YIPF3 and YIPF4, cis-Golgi Localizing Yip domain family proteins. |
Transcriptome analysis of human gastric cancer. |