Gene Symbol | TMEM106B |
Entrez Gene ID | 54664 |
Full Name | transmembrane protein 106B |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
ORF » Species Summary » Homo sapiens » TMEM106B cDNA ORF clone
Gene Symbol | TMEM106B |
Entrez Gene ID | 54664 |
Full Name | transmembrane protein 106B |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
mRNA | Protein | Name |
---|---|---|
NM_001134232.1 | NP_001127704.1 | transmembrane protein 106B |
NM_018374.3 | NP_060844.2 | transmembrane protein 106B |
NM_018374.4 | NP_060844.2 | transmembrane protein 106B |
NM_001134232.2 | NP_001127704.1 | transmembrane protein 106B |
XM_005249789.1 | XP_005249846.1 | transmembrane protein 106B isoform X1 |
Pan troglodytes (chimpanzee) | TMEM106B | XP_518973.3 |
TMEM106B | XP_001082836.2 | |
Canis lupus familiaris (dog) | TMEM106B | XP_005628619.1 |
Mus musculus (house mouse) | Tmem106b | NP_082268.2 |
Danio rerio (zebrafish) | tmem106bb | NP_001038517.1 |
Gallus gallus (chicken) | TMEM106B | NP_001012576.1 |
Homo sapiens (human) | TMEM106B | NP_060844.2 |
Bos taurus (cattle) | TMEM106B | NP_001029509.1 |
Rattus norvegicus (Norway rat) | Tmem106b | NP_001004267.1 |
Xenopus tropicalis (tropical clawed frog) | tmem106b | NP_001016812.1 |
A recurrent de novo mutation in TMEM106B causes hypomyelinating leukodystrophy.
Simons C, Dyment D, Bent SJ, Crawford J, D'Hooghe M, Kohlsch?tter A, Venkateswaran S, Helman G, Poll-The BT, Makowski CC, Ito Y, Kernohan K, Hartley T, Waisfisz Q, Taft RJ, , van der Knaap MS, Wolf NI
Brain : a journal of neurology140(12)3105-3111(2017 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Single-nucleotide polymorphisms in the TMEM106B gene have been identified as a risk factor in frontotemporal dementia (FTD).
Title: TMEM106B and ApoE polymorphisms in CHMP2B-mediated frontotemporal dementia (FTD-3).
A common causal variant underlying both association with disease and association with TMEM106B expression in lymphoblastoid cell lines.
Title: A Dementia-Associated Risk Variant near TMEM106B Alters Chromatin Architecture and Gene Expression.
TMEM106B enhances the benefit of cognitive reserve on brain structure in fronto-temporal dementia.
Title: Cognitive reserve and TMEM106B genotype modulate brain damage in presymptomatic frontotemporal dementia: a GENFI study.
we expanded our understanding of the TMEM106B haplotype that is protective against TDP-43 proteinopathy.
Title: Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.
Study developed a TMEM106B transgenic mouse model that recapitulates the interaction between progranulin and TMEM106B in human patients and supports a regulation of TMEM106B by progranulin in the aged brain and a role of TMEM106B in frontotemporal lobar degeneration-progranulin disease progression.
Title: Elevated TMEM106B levels exaggerate lipofuscin accumulation and lysosomal dysfunction in aged mice with progranulin deficiency.
The following TMEM106B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the TMEM106B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu17671 | |
Clone ID Related Accession (Same CDS sequence) | NM_001134232.1 , NM_018374.3 , NM_018374.4 , NM_001134232.2 , XM_005249789.1 | |
Accession Version | NM_001134232.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 825bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-11-19 | |
Organism | Homo sapiens(human) | |
Product | transmembrane protein 106B | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA452299.1, BC033901.2 and AC007321.2. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1660805.61970.1, SRR1660809.33761.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001127704.1 |
CDS | 207..1031 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001134232.1 |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu17671 | |
Clone ID Related Accession (Same CDS sequence) | NM_001134232.1 , NM_018374.3 , NM_018374.4 , NM_001134232.2 , XM_005249789.1 | |
Accession Version | NM_018374.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 825bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-09 | |
Organism | Homo sapiens(human) | |
Product | transmembrane protein 106B | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA452299.1, BC033901.2 and AC007321.2. On Aug 21, 2008 this sequence version replaced NM_018374.2. Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC033901.2, SRR1660803.54443.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA2144120 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_060844.2 |
CDS | 401..1225 |
Translation |
Target ORF information:
Target ORF information:
|
NM_018374.3 |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu17671 | |
Clone ID Related Accession (Same CDS sequence) | NM_001134232.1 , NM_018374.3 , NM_018374.4 , NM_001134232.2 , XM_005249789.1 | |
Accession Version | NM_018374.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 825bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-07-27 | |
Organism | Homo sapiens(human) | |
Product | transmembrane protein 106B | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA452299.1, BC033901.2 and AC007321.2. On May 31, 2019 this sequence version replaced NM_018374.3. Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC033901.2, SRR1660803.54443.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA2144120 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_060844.2 |
CDS | 329..1153 |
Translation |
Target ORF information:
Target ORF information:
|
NM_018374.4 |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu17671 | |
Clone ID Related Accession (Same CDS sequence) | NM_001134232.1 , NM_018374.3 , NM_018374.4 , NM_001134232.2 , XM_005249789.1 | |
Accession Version | NM_001134232.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 825bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-07-28 | |
Organism | Homo sapiens(human) | |
Product | transmembrane protein 106B | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA452299.1, BC033901.2 and AC007321.2. On Nov 23, 2018 this sequence version replaced NM_001134232.1. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1660807.10086.1, SRR1660807.156750.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000396668.8/ ENSP00000379902.3 RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: full length. |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001127704.1 |
CDS | 135..959 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001134232.2 |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu17671 | |
Clone ID Related Accession (Same CDS sequence) | NM_001134232.1 , NM_018374.3 , NM_018374.4 , NM_001134232.2 , XM_005249789.1 | |
Accession Version | XM_005249789.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 825bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | transmembrane protein 106B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000007.14) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005249846.1 |
CDS | 257..1081 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005249789.1 |
1 | ATGGGAAAGT CTCTTTCTCA TTTGCCTTTG CATTCAAGCA AAGAAGATGC TTATGATGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A recurrent de novo mutation in TMEM106B causes hypomyelinating leukodystrophy. |