Gene Symbol | YTHDF1 |
Entrez Gene ID | 54915 |
Full Name | YTH N6-methyladenosine RNA binding protein 1 |
Synonyms | C20orf21 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
ORF » Species Summary » Homo sapiens » YTHDF1 cDNA ORF clone
Gene Symbol | YTHDF1 |
Entrez Gene ID | 54915 |
Full Name | YTH N6-methyladenosine RNA binding protein 1 |
Synonyms | C20orf21 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
mRNA | Protein | Name |
---|---|---|
NM_017798.3 | NP_060268.2 | YTH domain-containing family protein 1 |
NM_017798.4 | NP_060268.2 | YTH domain-containing family protein 1 |
XM_024451914.1 | XP_024307682.1 | YTH domain-containing family protein 1 isoform X1 |
Rattus norvegicus (Norway rat) | Ythdf1 | NP_001019927.1 |
Gallus gallus (chicken) | YTHDF1 | NP_001012851.1 |
Danio rerio (zebrafish) | ythdf1 | NP_997878.1 |
Xenopus tropicalis (tropical clawed frog) | ythdf1 | NP_989392.1 |
YTHDF1 | XP_002798106.1 | |
Mus musculus (house mouse) | Ythdf1 | NP_776122.1 |
Pan troglodytes (chimpanzee) | YTHDF1 | XP_003317109.1 |
Canis lupus familiaris (dog) | YTHDF1 | XP_005635335.1 |
Homo sapiens (human) | YTHDF1 | NP_060268.2 |
Bos taurus (cattle) | YTHDF1 | NP_001178345.1 |
YTHDF3 facilitates translation and decay of N
Shi H, Wang X, Lu Z, Zhao BS, Ma H, Hsu PJ, Liu C, He C
Cell research27(3)315-328(2017 Mar)
Cytoplasmic m
Li A, Chen YS, Ping XL, Yang X, Xiao W, Yang Y, Sun HY, Zhu Q, Baidya P, Wang X, Bhattarai DP, Zhao YL, Sun BF, Yang YG
Cell research27(3)444-447(2017 Mar)
N(6)-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression.
Tirumuru N, Zhao BS, Lu W, Lu Z, He C, Wu L
eLife5(2016 07)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The authors found that the overexpression of YTHDF proteins in cells inhibited HIV-1 infection mainly by decreasing HIV-1 reverse transcription, while knockdown of YTHDF1-3 in cells had the opposite effects. Moreover, silencing the N(6)-methyladenosine writers decreased HIV-1 Gag protein expression in virus-producing cells, while silencing the N(6)-methyladenosine erasers increased Gag expression.
Title: N(6)-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression.
binding affinities of the YTH domains of three human proteins and yeast YTH domain protein Pho92
Title: Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins.
The following YTHDF1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the YTHDF1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu08855 | |
Clone ID Related Accession (Same CDS sequence) | NM_017798.3 , NM_017798.4 | |
Accession Version | NM_017798.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1680bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-12-05 | |
Organism | Homo sapiens(human) | |
Product | YTH domain-containing family protein 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC050284.1 and BC003681.1. On Oct 11, 2008 this sequence version replaced NM_017798.2. ##Evidence-Data-START## Transcript exon combination :: BC050284.1, SRR1163655.119553.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGTCGGCCA CCAGCGTGGA CACCCAGAGA ACAAAAGGAC AAGATAATAA AGTACAAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_060268.2 |
CDS | 295..1974 |
Translation |
Target ORF information:
Target ORF information:
|
NM_017798.3 |
1 | ATGTCGGCCA CCAGCGTGGA CACCCAGAGA ACAAAAGGAC AAGATAATAA AGTACAAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu08855 | |
Clone ID Related Accession (Same CDS sequence) | NM_017798.3 , NM_017798.4 | |
Accession Version | NM_017798.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1680bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-26 | |
Organism | Homo sapiens(human) | |
Product | YTH domain-containing family protein 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC050284.1 and BC003681.1. On Nov 23, 2018 this sequence version replaced NM_017798.3. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC050284.1, SRR1163655.119553.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000370339.8/ ENSP00000359364.3 RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: full length. |
1 | ATGTCGGCCA CCAGCGTGGA CACCCAGAGA ACAAAAGGAC AAGATAATAA AGTACAAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_060268.2 |
CDS | 240..1919 |
Translation |
Target ORF information:
Target ORF information:
|
NM_017798.4 |
1 | ATGTCGGCCA CCAGCGTGGA CACCCAGAGA ACAAAAGGAC AAGATAATAA AGTACAAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu105123 | |
Clone ID Related Accession (Same CDS sequence) | XM_024451914.1 | |
Accession Version | XM_024451914.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1530bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | YTH domain-containing family protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000020.11) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCGACC CCTACCTGTC CAGCTATTAC CCGCCGTCCA TTGGATTTCC TTACTCCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024307682.1 |
CDS | 208..1737 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024451914.1 |
1 | ATGAGCGACC CCTACCTGTC CAGCTATTAC CCGCCGTCCA TTGGATTTCC TTACTCCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
YTHDF3 facilitates translation and decay of N |
Cytoplasmic m |
N(6)-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression. |