Gene Symbol | Xylb |
Entrez Gene ID | 102448 |
Full Name | xylulokinase homolog (H. influenzae) |
Synonyms | AI132223,AI327421 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Xylb cDNA ORF clone
gRNAs
Gene Symbol | Xylb |
Entrez Gene ID | 102448 |
Full Name | xylulokinase homolog (H. influenzae) |
Synonyms | AI132223,AI327421 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017313063.1 | XP_017168552.1 | xylulose kinase isoform X2 |
XM_030243940.1 | XP_030099800.1 | xylulose kinase isoform X2 |
XM_011242927.2 | XP_011241229.1 | xylulose kinase isoform X1 |
XM_006511908.3 | XP_006511971.1 | xylulose kinase isoform X1 |
XM_030243939.1 | XP_030099799.1 | xylulose kinase isoform X1 |
NM_001359699.1 | NP_001346628.1 | xylulose kinase isoform 3 |
NM_001033209.3 | NP_001028381.1 | xylulose kinase isoform 1 |
NM_001199568.1 | NP_001186497.1 | xylulose kinase isoform 2 |
Pan troglodytes (chimpanzee) | XYLB | XP_526176.4 |
Gallus gallus (chicken) | XYLB | XP_418537.1 |
XYLB | XP_001086867.1 | |
Canis lupus familiaris (dog) | XYLB | XP_851427.1 |
Homo sapiens (human) | XYLB | NP_005099.2 |
Bos taurus (cattle) | XYLB | NP_001029655.1 |
Mus musculus (house mouse) | Xylb | NP_001028381.1 |
Rattus norvegicus (Norway rat) | Xylb | NP_001028876.1 |
Danio rerio (zebrafish) | xylb | NP_956673.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP000220 | XP_310914.4 |
Caenorhabditis elegans (roundworm) | R08D7.7 | NP_498988.2 |
Xenopus tropicalis (tropical clawed frog) | xylb | XP_004915564.1 |
Drosophila melanogaster (fruit fly) | CG3534 | NP_650582.1 |
Arabidopsis thaliana (thale cress) | XK-2 | NP_199776.1 |
Oryza sativa (rice) | Os07g0640200 | NP_001060421.1 |
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, Livstone MS, Lewis SE, Thomas PD
Briefings in bioinformatics12(5)449-62(2011 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Xylb gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Xylb cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu02270 | |
Clone ID Related Accession (Same CDS sequence) | XM_017313063.1 , XM_030243940.1 , NM_001199568.1 | |
Accession Version | NM_001199568.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 957bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-24 | |
Organism | Mus musculus(house mouse) | |
Product | xylulose kinase isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK143476.1, AK164186.1 and AK165759.1. Transcript Variant: This variant (2) has multiple differences, one of which results in the use of a downstream start codon, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK165759.1, AK164186.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAATCTGT TGCAGATCCA GGAAAAAGTC TGGTCCCAGG CTTGTCTGGA TGTCTGTGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001186497.1 |
CDS | 973..1929 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAATCTGT TGCAGATCCA GGAAAAAGTC TGGTCCCAGG CTTGTCTGGA TGTCTGTGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu43273 | |
Clone ID Related Accession (Same CDS sequence) | XM_011242927.2 , XM_006511908.3 , XM_030243939.1 , NM_001359699.1 | |
Accession Version | NM_001359699.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1377bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-29 | |
Organism | Mus musculus(house mouse) | |
Product | xylulose kinase isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC128702.4 and AC166052.5. On Jan 13, 2018 this sequence version replaced XM_006511908.3. Transcript Variant: This variant (3) lacks a 5' exon which results in the use of a downstream start codon, compared to variant 1. The resulting protein (isoform 3) is shorter when it is compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK170197.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849380 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAAGTCTT CTGGCTTTGA CTTCTCTCAA GTTCTAGCCT TATCTGGAGC AGGCCAGCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001346628.1 |
CDS | 435..1811 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAGTCTT CTGGCTTTGA CTTCTCTCAA GTTCTAGCCT TATCTGGAGC AGGCCAGCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu02270 | |
Clone ID Related Accession (Same CDS sequence) | XM_017313063.1 , XM_030243940.1 , NM_001199568.1 | |
Accession Version | XM_017313063.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 957bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | xylulose kinase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000075.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAATCTGT TGCAGATCCA GGAAAAAGTC TGGTCCCAGG CTTGTCTGGA TGTCTGTGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017168552.1 |
CDS | 747..1703 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAATCTGT TGCAGATCCA GGAAAAAGTC TGGTCCCAGG CTTGTCTGGA TGTCTGTGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu43273 | |
Clone ID Related Accession (Same CDS sequence) | XM_011242927.2 , XM_006511908.3 , XM_030243939.1 , NM_001359699.1 | |
Accession Version | XM_011242927.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1377bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | xylulose kinase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000075.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011242927.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGTCTT CTGGCTTTGA CTTCTCTCAA GTTCTAGCCT TATCTGGAGC AGGCCAGCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011241229.1 |
CDS | 1538..2914 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAGTCTT CTGGCTTTGA CTTCTCTCAA GTTCTAGCCT TATCTGGAGC AGGCCAGCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu43273 | |
Clone ID Related Accession (Same CDS sequence) | XM_011242927.2 , XM_006511908.3 , XM_030243939.1 , NM_001359699.1 | |
Accession Version | XM_006511908.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1377bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | xylulose kinase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000075.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006511908.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGTCTT CTGGCTTTGA CTTCTCTCAA GTTCTAGCCT TATCTGGAGC AGGCCAGCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006511971.1 |
CDS | 1004..2380 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAGTCTT CTGGCTTTGA CTTCTCTCAA GTTCTAGCCT TATCTGGAGC AGGCCAGCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu02270 | |
Clone ID Related Accession (Same CDS sequence) | XM_017313063.1 , XM_030243940.1 , NM_001199568.1 | |
Accession Version | XM_030243940.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 957bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | xylulose kinase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000075.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAATCTGT TGCAGATCCA GGAAAAAGTC TGGTCCCAGG CTTGTCTGGA TGTCTGTGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030099800.1 |
CDS | 156..1112 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAATCTGT TGCAGATCCA GGAAAAAGTC TGGTCCCAGG CTTGTCTGGA TGTCTGTGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu43273 | |
Clone ID Related Accession (Same CDS sequence) | XM_011242927.2 , XM_006511908.3 , XM_030243939.1 , NM_001359699.1 | |
Accession Version | XM_030243939.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1377bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | xylulose kinase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000075.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGTCTT CTGGCTTTGA CTTCTCTCAA GTTCTAGCCT TATCTGGAGC AGGCCAGCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030099799.1 |
CDS | 961..2337 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAGTCTT CTGGCTTTGA CTTCTCTCAA GTTCTAGCCT TATCTGGAGC AGGCCAGCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu12489 | |
Clone ID Related Accession (Same CDS sequence) | NM_001033209.3 | |
Accession Version | NM_001033209.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1656bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-24 | |
Organism | Mus musculus(house mouse) | |
Product | xylulose kinase isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK143476.1 and AK165759.1. On Dec 9, 2010 this sequence version replaced NM_001033209.2. Transcript Variant: This variant (1) encodes the longer protein (isoform 1). ##Evidence-Data-START## Transcript exon combination :: AK143476.1, AK165518.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849380 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGACGCAC GGACGCACAG ACGGGCGGCG GGAACCCCCA GGGCCCTGGC GGAGCGCGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001028381.1 |
CDS | 226..1881 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACGCAC GGACGCACAG ACGGGCGGCG GGAACCCCCA GGGCCCTGGC GGAGCGCGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. |