Gene Symbol | Rpusd1 |
Entrez Gene ID | 106707 |
Full Name | RNA pseudouridylate synthase domain containing 1 |
Synonyms | 2310051D06Rik,AU019540,Rlucl |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Rpusd1 cDNA ORF clone
Gene Symbol | Rpusd1 |
Entrez Gene ID | 106707 |
Full Name | RNA pseudouridylate synthase domain containing 1 |
Synonyms | 2310051D06Rik,AU019540,Rlucl |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_028009.3 | NP_082285.1 | RNA pseudouridylate synthase domain-containing protein 1 |
XM_006523414.1 | XP_006523477.1 | RNA pseudouridylate synthase domain-containing protein 1 isoform X1 |
NM_001357176.1 | NP_001344105.1 | RNA pseudouridylate synthase domain-containing protein 1 isoform 2 |
XM_006523418.1 | XP_006523481.1 | RNA pseudouridylate synthase domain-containing protein 1 isoform X2 |
XM_006523416.1 | XP_006523479.1 | RNA pseudouridylate synthase domain-containing protein 1 isoform X2 |
NM_028009.4 | NP_082285.1 | RNA pseudouridylate synthase domain-containing protein 1 isoform 1 |
Pan troglodytes (chimpanzee) | RPUSD1 | XP_510721.3 |
Canis lupus familiaris (dog) | RPUSD1 | XP_005621794.1 |
Gallus gallus (chicken) | RPUSD1 | XP_003642166.1 |
Mus musculus (house mouse) | Rpusd1 | NP_082285.1 |
Rattus norvegicus (Norway rat) | Rpusd1 | NP_001099244.1 |
Xenopus tropicalis (tropical clawed frog) | rpusd1 | XP_002935894.1 |
Homo sapiens (human) | RPUSD1 | NP_478072.1 |
Bos taurus (cattle) | RPUSD1 | NP_001069342.1 |
Danio rerio (zebrafish) | rpusd1 | NP_001070221.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP004401 | XP_313685.5 |
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, Livstone MS, Lewis SE, Thomas PD
Briefings in bioinformatics12(5)449-62(2011 Sep)
Antisense transcription in the mammalian transcriptome.
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstr?m PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, , ,
Science (New York, N.Y.)309(5740)1564-6(2005 Sep)
The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Sch?nbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, ,
Science (New York, N.Y.)309(5740)1559-63(2005 Sep)
Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.
Ko MS, Kitchen JR, Wang X, Threat TA, Wang X, Hasegawa A, Sun T, Grahovac MJ, Kargul GJ, Lim MK, Cui Y, Sano Y, Tanaka T, Liang Y, Mason S, Paonessa PD, Sauls AD, DePalma GE, Sharara R, Rowe LB, Eppig J, Morrell C, Doi H
Development (Cambridge, England)127(8)1737-49(2000 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Rpusd1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Rpusd1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu04946 | |
Clone ID Related Accession (Same CDS sequence) | NM_028009.3 , XM_006523414.1 , NM_028009.4 | |
Accession Version | NM_028009.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 921bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-02-14 | |
Organism | Mus musculus(House mouse) | |
Product | RNA pseudouridylate synthase domain-containing protein 1 | |
Comment | PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AC134908.5. On Apr 30, 2007 this sequence version replaced NM_028009.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AK049334.1, BC018186.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGAGCCTG GCAGCATGGA AAATCTGTCC ATCGTGTACC AGAGCAGCGA CTTCCTGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_082285.1 |
CDS | 105..1025 |
Translation |
Target ORF information:
Target ORF information:
|
NM_028009.3 |
1 | ATGGAGCCTG GCAGCATGGA AAATCTGTCC ATCGTGTACC AGAGCAGCGA CTTCCTGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu04946 | |
Clone ID Related Accession (Same CDS sequence) | NM_028009.3 , XM_006523414.1 , NM_028009.4 | |
Accession Version | NM_028009.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 921bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-21 | |
Organism | Mus musculus(house mouse) | |
Product | RNA pseudouridylate synthase domain-containing protein 1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY210331.1, AK049334.1 and AI840239.1. On Oct 21, 2017 this sequence version replaced NM_028009.3. ##Evidence-Data-START## Transcript exon combination :: BC018186.1, AK049334.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGAGCCTG GCAGCATGGA AAATCTGTCC ATCGTGTACC AGAGCAGCGA CTTCCTGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_082285.1 |
CDS | 139..1059 |
Translation |
Target ORF information:
Target ORF information:
|
NM_028009.4 |
1 | ATGGAGCCTG GCAGCATGGA AAATCTGTCC ATCGTGTACC AGAGCAGCGA CTTCCTGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu52968 | |
Clone ID Related Accession (Same CDS sequence) | NM_001357176.1 , XM_006523418.1 , XM_006523416.1 | |
Accession Version | NM_001357176.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 534bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-24 | |
Organism | Mus musculus(house mouse) | |
Product | RNA pseudouridylate synthase domain-containing protein 1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY210331.1, AK009926.1 and AI840239.1. On Oct 21, 2017 this sequence version replaced XM_006523418.1. ##Evidence-Data-START## Transcript exon combination :: AK009926.1, AW742561.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTGCATCG AGGGCACTCA TGGTTGTGAG AACCCAAAGC CAAGCCTCAC AGAGCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001344105.1 |
CDS | 337..870 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001357176.1 |
1 | ATGTGCATCG AGGGCACTCA TGGTTGTGAG AACCCAAAGC CAAGCCTCAC AGAGCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu04946 | |
Clone ID Related Accession (Same CDS sequence) | NM_028009.3 , XM_006523414.1 , NM_028009.4 | |
Accession Version | XM_006523414.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 921bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | RNA pseudouridylate synthase domain-containing protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000083.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGCCTG GCAGCATGGA AAATCTGTCC ATCGTGTACC AGAGCAGCGA CTTCCTGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006523477.1 |
CDS | 175..1095 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006523414.1 |
1 | ATGGAGCCTG GCAGCATGGA AAATCTGTCC ATCGTGTACC AGAGCAGCGA CTTCCTGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu52968 | |
Clone ID Related Accession (Same CDS sequence) | NM_001357176.1 , XM_006523418.1 , XM_006523416.1 | |
Accession Version | XM_006523418.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 534bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(House mouse) | |
Product | RNA pseudouridylate synthase domain-containing protein 1 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000083.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGCATCG AGGGCACTCA TGGTTGTGAG AACCCAAAGC CAAGCCTCAC AGAGCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006523481.1 |
CDS | 347..880 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006523418.1 |
1 | ATGTGCATCG AGGGCACTCA TGGTTGTGAG AACCCAAAGC CAAGCCTCAC AGAGCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu52968 | |
Clone ID Related Accession (Same CDS sequence) | NM_001357176.1 , XM_006523418.1 , XM_006523416.1 | |
Accession Version | XM_006523416.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 534bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | RNA pseudouridylate synthase domain-containing protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000083.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGCATCG AGGGCACTCA TGGTTGTGAG AACCCAAAGC CAAGCCTCAC AGAGCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006523479.1 |
CDS | 487..1020 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006523416.1 |
1 | ATGTGCATCG AGGGCACTCA TGGTTGTGAG AACCCAAAGC CAAGCCTCAC AGAGCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. |
Antisense transcription in the mammalian transcriptome. |
The transcriptional landscape of the mammalian genome. |
Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. |