Gene Symbol | Epha6 |
Entrez Gene ID | 13840 |
Full Name | Eph receptor A6 |
Synonyms | Ehk2,Hek12,m-ehk2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Epha6 cDNA ORF clone
gRNAs
Gene Symbol | Epha6 |
Entrez Gene ID | 13840 |
Full Name | Eph receptor A6 |
Synonyms | Ehk2,Hek12,m-ehk2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006521787.2 | XP_006521850.1 | ephrin type-A receptor 6 isoform X1 |
XM_011245826.3 | XP_011244128.1 | ephrin type-A receptor 6 isoform X2 |
NM_007938.2 | NP_031964.2 | ephrin type-A receptor 6 |
XM_006521787.3 | XP_006521850.1 | ephrin type-A receptor 6 isoform X1 |
XM_011245826.2 | XP_011244128.1 | ephrin type-A receptor 6 isoform X2 |
Danio rerio (zebrafish) | epha6 | XP_005159987.1 |
Pan troglodytes (chimpanzee) | EPHA6 | XP_516608.4 |
Homo sapiens (human) | EPHA6 | NP_001073917.2 |
Rattus norvegicus (Norway rat) | Epha6 | XP_221595.6 |
Bos taurus (cattle) | EPHA6 | XP_002684725.2 |
Mus musculus (house mouse) | Epha6 | NP_031964.2 |
Gallus gallus (chicken) | EPHA6 | XP_004938372.1 |
EPHA6 | XP_001085352.2 | |
Canis lupus familiaris (dog) | EPHA6 | XP_005639415.1 |
Xenopus tropicalis (tropical clawed frog) | epha6 | XP_002931822.2 |
A dual-strategy expression screen for candidate connectivity labels in the developing thalamus.
Bibollet-Bahena O, Okafuji T, Hokamp K, Tear G, Mitchell KJ
PloS one12(5)e0177977(2017)
EphrinA5 Signaling Is Required for the Distinctive Targeting of Raphe Serotonin Neurons in the Forebrain.
Teng T, Gaillard A, Muzerelle A, Gaspar P
eNeuro4(1)(2017 Jan-Feb)
High-throughput discovery of novel developmental phenotypes.
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, , , , , , , , , MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bu?an M, Murray SA
Nature537(7621)508-514(2016 09)
Novel Roles and Mechanism for Kr?ppel-like Factor 16 (KLF16) Regulation of Neurite Outgrowth and Ephrin Receptor A5 (EphA5) Expression in Retinal Ganglion Cells.
Wang J, Galvao J, Beach KM, Luo W, Urrutia RA, Goldberg JL, Otteson DC
The Journal of biological chemistry291(35)18084-95(2016 08)
Ephrin Ligands and Eph Receptors Show Regionally Restricted Expression in the Developing Palate and Tongue.
Xavier GM, Miletich I, Cobourne MT
Frontiers in physiology760(2016)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
EPHA6, a gene implicated in retinal axon guidance, is one of HMX1 targets in eye development.
Title: A dimerized HMX1 inhibits EPHA6/epha4b in mouse and zebrafish retinas.
These findings suggest that EphA6, in line with a number of other Eph receptors and their ephrin ligands, is involved in neural circuits underlying aspects of learning and memory.
Title: Learning and memory impairment in Eph receptor A6 knockout mice.
HOXA13 directly regulates EphA6 and EphA7 in the developing genital tubercle.
Title: HOXA13 directly regulates EphA6 and EphA7 expression in the genital tubercle vascular endothelia.
The following Epha6 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Epha6 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu67656 | |
Clone ID Related Accession (Same CDS sequence) | XM_011245826.3 , XM_011245826.2 | |
Accession Version | XM_011245826.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1149bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | ephrin type-A receptor 6 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000082.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011245826.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAATTCC CCTCGCCTCC AGCCGCCAGG AGCTCCCCGG CGGCGCAGGC AGCATCGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011244128.1 |
CDS | 5664..6812 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCAATTCC CCTCGCCTCC AGCCGCCAGG AGCTCCCCGG CGGCGCAGGC AGCATCGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu51869 | |
Clone ID Related Accession (Same CDS sequence) | XM_006521787.2 , XM_006521787.3 | |
Accession Version | XM_006521787.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2925bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | ephrin type-A receptor 6 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000082.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006521787.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGAAC ACAATAGGCC CATACATACA TACCAGGTAT GCAATGTCAT GGAACCAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006521850.1 |
CDS | 388..3312 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGATGAAC ACAATAGGCC CATACATACA TACCAGGTAT GCAATGTCAT GGAACCAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu51869 | |
Clone ID Related Accession (Same CDS sequence) | XM_006521787.2 , XM_006521787.3 | |
Accession Version | XM_006521787.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2925bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | ephrin type-A receptor 6 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000082.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006521787.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGAAC ACAATAGGCC CATACATACA TACCAGGTAT GCAATGTCAT GGAACCAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006521850.1 |
CDS | 6252..9176 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGATGAAC ACAATAGGCC CATACATACA TACCAGGTAT GCAATGTCAT GGAACCAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu01079 | |
Clone ID Related Accession (Same CDS sequence) | NM_007938.2 | |
Accession Version | NM_007938.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3393bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-11-15 | |
Organism | Mus musculus(house mouse) | |
Product | ephrin type-A receptor 6 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC134526.4, AC133940.4, AC118603.9, CT009682.6, AC154632.2, AC122318.4, AC131707.3, AC154212.2 and AC154473.2. On Apr 18, 2007 this sequence version replaced NM_007938.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: U58332.1, BC141090.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGCAATTCC CCTCGCCTCC AGCCGCCAGG AGCTCCCCGG CGGCGCAGGC AGCATCGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_031964.2 |
CDS | 284..3676 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCAATTCC CCTCGCCTCC AGCCGCCAGG AGCTCCCCGG CGGCGCAGGC AGCATCGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu67656 | |
Clone ID Related Accession (Same CDS sequence) | XM_011245826.3 , XM_011245826.2 | |
Accession Version | XM_011245826.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1149bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | ephrin type-A receptor 6 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000082.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011245826.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAATTCC CCTCGCCTCC AGCCGCCAGG AGCTCCCCGG CGGCGCAGGC AGCATCGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011244128.1 |
CDS | 5508..6656 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCAATTCC CCTCGCCTCC AGCCGCCAGG AGCTCCCCGG CGGCGCAGGC AGCATCGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A dual-strategy expression screen for candidate connectivity labels in the developing thalamus. |
EphrinA5 Signaling Is Required for the Distinctive Targeting of Raphe Serotonin Neurons in the Forebrain. |
High-throughput discovery of novel developmental phenotypes. |
Novel Roles and Mechanism for Kr?ppel-like Factor 16 (KLF16) Regulation of Neurite Outgrowth and Ephrin Receptor A5 (EphA5) Expression in Retinal Ganglion Cells. |
Ephrin Ligands and Eph Receptors Show Regionally Restricted Expression in the Developing Palate and Tongue. |