Gene Symbol | Sypl |
Entrez Gene ID | 19027 |
Full Name | synaptophysin-like protein |
Synonyms | AI314763,AI604763,D12Ertd446e,PanI,Pphn,Sypl1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Sypl cDNA ORF clone
Gene Symbol | Sypl |
Entrez Gene ID | 19027 |
Full Name | synaptophysin-like protein |
Synonyms | AI314763,AI604763,D12Ertd446e,PanI,Pphn,Sypl1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_011243843.1 | XP_011242145.1 | synaptophysin-like protein 1 isoform X2 |
NM_198710.3 | NP_942003.1 | synaptophysin-like protein 1 isoform 2 |
XM_011243843.2 | XP_011242145.1 | synaptophysin-like protein 1 isoform X2 |
XM_011243842.1 | XP_011242144.1 | synaptophysin-like protein 1 isoform X1 |
XM_011243842.2 | XP_011242144.1 | synaptophysin-like protein 1 isoform X1 |
NM_013635.3 | NP_038663.2 | synaptophysin-like protein 1 isoform 1 |
Homo sapiens (human) | SYPL1 | NP_006745.1 |
Pan troglodytes (chimpanzee) | SYPL1 | XP_003318784.2 |
SYPL1 | XP_001090107.1 | |
Canis lupus familiaris (dog) | SYPL1 | XP_005631072.1 |
Mus musculus (house mouse) | Sypl | NP_038663.2 |
Rattus norvegicus (Norway rat) | Sypl1 | NP_001014285.1 |
Gallus gallus (chicken) | SYPL1 | NP_001186387.1 |
Danio rerio (zebrafish) | LOC100330238 | XP_002661387.1 |
Xenopus tropicalis (tropical clawed frog) | sypl1 | NP_989081.1 |
High-throughput discovery of novel developmental phenotypes.
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, , , , , , , , , MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bu?an M, Murray SA
Nature537(7621)508-514(2016 09)
Nucleotide polymorphism and natural selection at the pantophysin (Pan I) locus in the Atlantic cod, Gadus morhua (L.).
Pogson GH
Genetics157(1)317-30(2001 Jan)
Tissue expression of the vesicle protein pantophysin.
Windoffer R, Borchert-Stuhltr?ger M, Haass NK, Thomas S, Hergt M, Bulitta CJ, Leube RE
Cell and tissue research296(3)499-510(1999 Jun)
Pantophysin is a ubiquitously expressed synaptophysin homologue and defines constitutive transport vesicles.
Haass NK, Kartenbeck MA, Leube RE
The Journal of cell biology134(3)731-46(1996 Aug)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Sypl gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Sypl cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu09176 | |
Clone ID Related Accession (Same CDS sequence) | NM_198710.3 | |
Accession Version | NM_198710.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 732bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-24 | |
Organism | Mus musculus(house mouse) | |
Product | synaptophysin-like protein 1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB847647.1, AK049556.1 and AC155258.2. On Apr 18, 2009 this sequence version replaced NM_198710.2. Transcript Variant: This variant (2) lacks a segment of the 5' UTR and 5' coding region, compared to variant 1. These differences result in a unique 5' UTR and a protein (isoform 2) with a shorter N-terminus, compared to isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK033303.1, AK049545.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCCGCCT TCCAGATCAA CCTCAACCCG CTCAAGGAGC CGCTCGGCTT CATCAAGATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_942003.1 |
CDS | 106..837 |
Translation |
Target ORF information:
Target ORF information:
|
NM_198710.3 |
1 | ATGTCCGCCT TCCAGATCAA CCTCAACCCG CTCAAGGAGC CGCTCGGCTT CATCAAGATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09721 | |
Clone ID Related Accession (Same CDS sequence) | NM_013635.3 | |
Accession Version | NM_013635.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 786bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-24 | |
Organism | Mus musculus(house mouse) | |
Product | synaptophysin-like protein 1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC060971.1 and AC155258.2. On Apr 18, 2009 this sequence version replaced NM_013635.2. Transcript Variant: This variant (1) encodes the longer isoform (1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC060971.1, CA463319.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849375, SAMN00849379 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_038663.2 |
CDS | 24..809 |
Translation |
Target ORF information:
Target ORF information:
|
NM_013635.3 |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu68478 | |
Clone ID Related Accession (Same CDS sequence) | XM_011243842.1 , XM_011243842.2 | |
Accession Version | XM_011243842.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 501bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | synaptophysin-like protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000078.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011242144.1 |
CDS | 96..596 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011243842.1 |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu68479 | |
Clone ID Related Accession (Same CDS sequence) | XM_011243843.1 , XM_011243843.2 | |
Accession Version | XM_011243843.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 495bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | synaptophysin-like protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000078.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011242145.1 |
CDS | 96..590 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011243843.1 |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu68478 | |
Clone ID Related Accession (Same CDS sequence) | XM_011243842.1 , XM_011243842.2 | |
Accession Version | XM_011243842.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 501bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | synaptophysin-like protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000078.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011243842.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011242144.1 |
CDS | 114..614 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011243842.2 |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu68479 | |
Clone ID Related Accession (Same CDS sequence) | XM_011243843.1 , XM_011243843.2 | |
Accession Version | XM_011243843.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 495bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | synaptophysin-like protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000078.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011243843.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011242145.1 |
CDS | 114..608 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011243843.2 |
1 | ATGGCTTCCA AAGCCAACAT GGTTCGTCAG CGGTTCAGCC GGCTGAGTCA GAGGATGTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
High-throughput discovery of novel developmental phenotypes. |
Nucleotide polymorphism and natural selection at the pantophysin (Pan I) locus in the Atlantic cod, Gadus morhua (L.). |
Tissue expression of the vesicle protein pantophysin. |
Pantophysin is a ubiquitously expressed synaptophysin homologue and defines constitutive transport vesicles. |