Gene Symbol | Ybx1 |
Entrez Gene ID | 22608 |
Full Name | Y box protein 1 |
Synonyms | 1700102N10Rik,C79409,EF1A,MSY1,Nsep1,YB-1,dbpB,mYB-1a |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Ybx1 cDNA ORF clone
Gene Symbol | Ybx1 |
Entrez Gene ID | 22608 |
Full Name | Y box protein 1 |
Synonyms | 1700102N10Rik,C79409,EF1A,MSY1,Nsep1,YB-1,dbpB,mYB-1a |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006502934.3 | XP_006502997.1 | nuclease-sensitive element-binding protein 1 isoform X2 |
XM_006502934.4 | XP_006502997.1 | nuclease-sensitive element-binding protein 1 isoform X2 |
XM_006502933.3 | XP_006502996.1 | nuclease-sensitive element-binding protein 1 isoform X1 |
XM_006502933.4 | XP_006502996.1 | nuclease-sensitive element-binding protein 1 isoform X1 |
XM_030253407.1 | XP_030109267.1 | nuclease-sensitive element-binding protein 1 isoform X3 |
NM_011732.2 | NP_035862.2 | Y-box-binding protein 1 |
Homo sapiens (human) | YBX1 | NP_004550.2 |
Canis lupus familiaris (dog) | LOC607025 | XP_848660.2 |
Rattus norvegicus (Norway rat) | Ybx1 | NP_113751.3 |
Danio rerio (zebrafish) | ybx1 | NP_571695.1 |
Mus musculus (house mouse) | Ybx1 | NP_035862.2 |
Pan troglodytes (chimpanzee) | YBX1 | XP_525693.3 |
Bos taurus (cattle) | YBX1 | NP_777240.1 |
YBX1 | XP_001088540.2 | |
Xenopus tropicalis (tropical clawed frog) | ybx1 | NP_001016677.1 |
Increased Expression of Y-Box-Binding Protein-1 in Hind-Limb Muscles During Regeneration from Ischemic Injury in Mice.
Fuke M, Narita M, Wada Y, Seto T, Okada K, Nakayama J, Izumi H, Ito KI
The Tohoku journal of experimental medicine244(1)53-62(2018)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
In conclusion, TGF-beta signaling pathway may influence liver fibrosis by incorporating with YB-1, indicating that YB-1 could be a potential target for therapies against liver fibrosis.
Title: Positive feedback loop of YB-1 interacting with Smad2 promotes liver fibrosis.
this study shows that innate immunity activation by muramyl peptides is mediated via an interaction between YB1 and NOD2
Title: Muramyl peptides activate innate immunity conjointly via YB1 and NOD2.
YB-1 is induced by Shh in CGNPs
Title: YB-1 is elevated in medulloblastoma and drives proliferation in Sonic hedgehog-dependent cerebellar granule neuron progenitor cells and medulloblastoma cells.
Reduction in the expression of YBX1 and ILF3 controls the expression of pluripotency-related genes in ESCs, suggesting their roles in further regulation of the pluripotent state of ESCs.
Title: Nanog RNA-binding proteins YBX1 and ILF3 affect pluripotency of embryonic stem cells.
In the initial stage of myocyte differentiation, transcription of the YB-1 gene was regulated by E2F1 and Sp1, and was then gradually replaced under the control of both MyoD and myogenin.
Title: YB-1 gene expression is kept constant during myocyte differentiation through replacement of different transcription factors and then falls gradually under the control of neural activity.
The following Ybx1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ybx1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu14925 | |
Clone ID Related Accession (Same CDS sequence) | NM_011732.2 | |
Accession Version | NM_011732.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 969bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-19 | |
Organism | Mus musculus(house mouse) | |
Product | Y-box-binding protein 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BU512458.1, AK150821.1, BX470153.3 and BG066506.2. On Aug 26, 2006 this sequence version replaced NM_011732.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK150821.1, BC031472.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_035862.2 |
CDS | 151..1119 |
Translation |
Target ORF information:
Target ORF information:
|
NM_011732.2 |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu33472 | |
Clone ID Related Accession (Same CDS sequence) | XM_006502933.3 , XM_006502933.4 | |
Accession Version | XM_006502933.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 981bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | nuclease-sensitive element-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006502933.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006502996.1 |
CDS | 1903..2883 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006502933.4 |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu33473 | |
Clone ID Related Accession (Same CDS sequence) | XM_006502934.3 , XM_006502934.4 | |
Accession Version | XM_006502934.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 891bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | nuclease-sensitive element-binding protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006502934.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006502997.1 |
CDS | 1903..2793 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006502934.4 |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu88489 | |
Clone ID Related Accession (Same CDS sequence) | XM_030253407.1 | |
Accession Version | XM_030253407.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 879bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | nuclease-sensitive element-binding protein 1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030109267.1 |
CDS | 1903..2781 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030253407.1 |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu33472 | |
Clone ID Related Accession (Same CDS sequence) | XM_006502933.3 , XM_006502933.4 | |
Accession Version | XM_006502933.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 981bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | nuclease-sensitive element-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006502933.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006502996.1 |
CDS | 284..1264 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006502933.3 |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu33473 | |
Clone ID Related Accession (Same CDS sequence) | XM_006502934.3 , XM_006502934.4 | |
Accession Version | XM_006502934.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 891bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | nuclease-sensitive element-binding protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006502934.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006502997.1 |
CDS | 304..1194 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006502934.3 |
1 | ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCCC CCGCCGCCGC CCTCAGCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Increased Expression of Y-Box-Binding Protein-1 in Hind-Limb Muscles During Regeneration from Ischemic Injury in Mice. |