Gene Symbol | Cntn4 |
Entrez Gene ID | 269784 |
Full Name | contactin 4 |
Synonyms | 9630050B05,Axcam,BIG-2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Cntn4 cDNA ORF clone
Gene Symbol | Cntn4 |
Entrez Gene ID | 269784 |
Full Name | contactin 4 |
Synonyms | 9630050B05,Axcam,BIG-2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006506196.2 | XP_006506259.1 | contactin-4 isoform X2 |
XM_017321599.1 | XP_017177088.1 | contactin-4 isoform X5 |
NM_001364565.1 | NP_001351494.1 | contactin-4 isoform 1 precursor |
XM_006506194.3 | XP_006506257.1 | contactin-4 isoform X1 |
XM_017321598.1 | XP_017177087.1 | contactin-4 isoform X2 |
XM_006506195.3 | XP_006506258.1 | contactin-4 isoform X1 |
NM_001364566.1 | NP_001351495.1 | contactin-4 isoform 3 precursor |
NM_001109749.1 | NP_001103219.1 | contactin-4 isoform 1 precursor |
XM_006506197.3 | XP_006506260.1 | contactin-4 isoform X3 |
XM_006506198.2 | XP_006506261.1 | contactin-4 isoform X4 |
XM_006506195.4 | XP_006506258.1 | contactin-4 isoform X1 |
XM_006506193.2 | XP_006506256.1 | contactin-4 isoform X1 |
XM_006506197.2 | XP_006506260.1 | contactin-4 isoform X3 |
XM_006506198.3 | XP_006506261.1 | contactin-4 isoform X4 |
NM_173004.3 | NP_766592.2 | contactin-4 isoform 2 precursor |
NM_001109751.1 | NP_001103221.1 | contactin-4 isoform 2 precursor |
XM_006506193.3 | XP_006506256.1 | contactin-4 isoform X1 |
XM_006506196.3 | XP_006506259.1 | contactin-4 isoform X2 |
Pan troglodytes (chimpanzee) | CNTN4 | XP_001138350.1 |
Canis lupus familiaris (dog) | CNTN4 | XP_005632298.1 |
Rattus norvegicus (Norway rat) | Cntn4 | NP_446331.1 |
Caenorhabditis elegans (roundworm) | rig-6 | NP_494861.1 |
Xenopus tropicalis (tropical clawed frog) | cntn4 | NP_001135636.1 |
Homo sapiens (human) | CNTN4 | NP_001193884.1 |
Danio rerio (zebrafish) | cntn4 | NP_001073520.1 |
Mus musculus (house mouse) | Cntn4 | NP_001103219.1 |
Gallus gallus (chicken) | CNTN4 | XP_004944765.1 |
CNTN4 | XP_001101217.2 | |
Bos taurus (cattle) | CNTN4 | XP_005222731.1 |
Danio rerio (zebrafish) | cntn3a.1 | XP_697914.4 |
Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues.
Nikolaienko RM, Hammel M, Dubreuil V, Zalmai R, Hall DR, Mehzabeen N, Karuppan SJ, Harroch S, Stella SL, Bouyain S
The Journal of biological chemistry291(41)21335-21349(2016 Oct)
Limited impact of Cntn4 mutation on autism-related traits in developing and adult C57BL/6J mice.
Molenhuis RT, Bruining H, Remmelink E, de Visser L, Loos M, Burbach JP, Kas MJ
Journal of neurodevelopmental disorders86(2016)
Contactin-4 mediates axon-target specificity and functional development of the accessory optic system.
Osterhout JA, Stafford BK, Nguyen PL, Yoshihara Y, Huberman AD
Neuron86(4)985-999(2015 May)
Spatially heterogeneous choroid plexus transcriptomes encode positional identity and contribute to regional CSF production.
Lun MP, Johnson MB, Broadbelt KG, Watanabe M, Kang YJ, Chau KF, Springel MW, Malesz A, Sousa AM, Pletikos M, Adelita T, Adelita T, Calicchio ML, Zhang Y, Holtzman MJ, Lidov HG, Sestan N, Steen H, Monuki ES, Lehtinen MK
The Journal of neuroscience : the official journal of the Society for Neuroscience35(12)4903-16(2015 Mar)
Expression of the immunoglobulin superfamily cell adhesion molecules in the developing spinal cord and dorsal root ganglion.
Gu Z, Imai F, Kim IJ, Fujita H, Katayama Ki, Mori K, Yoshihara Y, Yoshida Y
PloS one10(3)e0121550(2015)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Protein-tyrosine phosphatase receptor type G (RPTPgamma/PTPRG) interacts in vitro with contactin-3-6 (CNTN3-6), a group of glycophosphatidylinositol-anchored cell adhesion molecules involved in the wiring of the nervous system
Title: Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues.
including the adhesion molecule CNTN4,which contributed to the enhanced response
Title: Sphingosine-1-phosphate can promote mast cell hyper-reactivity through regulation of contactin-4 expression.
These results suggest that BIG-2 is one of the axon guidance molecules crucial for the formation and maintenance of functional odor map in the olfactory bulb.
Title: BIG-2 mediates olfactory axon convergence to target glomeruli.
The following Cntn4 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Cntn4 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu19181 | |
Clone ID Related Accession (Same CDS sequence) | XM_017321599.1 , NM_173004.3 , NM_001109751.1 | |
Accession Version | NM_173004.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2118bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-02 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform 2 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY267938.1, AK036262.1 and BC046975.1. On Oct 5, 2007 this sequence version replaced NM_173004.2. Transcript Variant: This variant (2) uses an alternate 3' exon, compared to variant 1. Variants 2 and 3 encode the same isoform (2), which has a shorter and distinct C-terminus compared to isoform 1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK036262.1, BC115766.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164132 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_766592.2 |
CDS | 498..2615 |
Translation |
Target ORF information:
Target ORF information:
|
NM_173004.3 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19181 | |
Clone ID Related Accession (Same CDS sequence) | XM_017321599.1 , NM_173004.3 , NM_001109751.1 | |
Accession Version | NM_001109751.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2118bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-02 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform 2 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK043507.1, AK087738.1, AC156281.4, AK036262.1 and BC046975.1. Transcript Variant: This variant (3), also known as BIG-2A, uses alternate 5' and 3' exons, compared to variant 1. Variants 2 and 3 encode the same isoform (2), which has a shorter and distinct C-terminus compared to isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The extent of this transcript is supported by transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## CDS exon combination :: BC046975.1, AK036262.1 [ECO:0000331] RNAseq introns :: mixed/partial sample support SAMN01164131, SAMN01164132 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001103221.1 |
CDS | 586..2703 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001109751.1 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19181 | |
Clone ID Related Accession (Same CDS sequence) | XM_017321599.1 , NM_173004.3 , NM_001109751.1 | |
Accession Version | XM_017321599.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2118bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X5 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017177088.1 |
CDS | 534..2651 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017321599.1 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37319 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506197.3 , XM_006506197.2 | |
Accession Version | XM_006506197.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2775bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006506197.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506260.1 |
CDS | 592..3366 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506197.2 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37320 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506198.2 , XM_006506198.3 | |
Accession Version | XM_006506198.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2772bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006506198.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506261.1 |
CDS | 592..3363 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506198.2 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37319 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506197.3 , XM_006506197.2 | |
Accession Version | XM_006506197.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2775bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006506197.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506260.1 |
CDS | 611..3385 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506197.3 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37320 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506198.2 , XM_006506198.3 | |
Accession Version | XM_006506198.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2772bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006506198.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506261.1 |
CDS | 611..3382 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506198.3 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19099 | |
Clone ID Related Accession (Same CDS sequence) | NM_001364565.1 , XM_006506194.3 , XM_006506195.3 , NM_001109749.1 , XM_006506195.4 , XM_006506193.2 , XM_006506193.3 | |
Accession Version | NM_001364565.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-24 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK043507.1, AK087738.1, AK036262.1, AK173340.1, AC164169.8 and BB078327.2. On Jun 22, 2018 this sequence version replaced XM_006506194.3. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1660817.207902.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164132 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001351494.1 |
CDS | 324..3404 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001364565.1 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19099 | |
Clone ID Related Accession (Same CDS sequence) | NM_001364565.1 , XM_006506194.3 , XM_006506195.3 , NM_001109749.1 , XM_006506195.4 , XM_006506193.2 , XM_006506193.3 | |
Accession Version | NM_001109749.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-02 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY267938.1, AK036262.1 and AK173340.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164132 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001103219.1 |
CDS | 498..3578 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001109749.1 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19099 | |
Clone ID Related Accession (Same CDS sequence) | NM_001364565.1 , XM_006506194.3 , XM_006506195.3 , NM_001109749.1 , XM_006506195.4 , XM_006506193.2 , XM_006506193.3 | |
Accession Version | XM_006506194.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006506194.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506257.1 |
CDS | 1176..4256 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506194.3 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19099 | |
Clone ID Related Accession (Same CDS sequence) | NM_001364565.1 , XM_006506194.3 , XM_006506195.3 , NM_001109749.1 , XM_006506195.4 , XM_006506193.2 , XM_006506193.3 | |
Accession Version | XM_006506195.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006506195.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506258.1 |
CDS | 1118..4198 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506195.3 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19099 | |
Clone ID Related Accession (Same CDS sequence) | NM_001364565.1 , XM_006506194.3 , XM_006506195.3 , NM_001109749.1 , XM_006506195.4 , XM_006506193.2 , XM_006506193.3 | |
Accession Version | XM_006506195.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006506195.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506258.1 |
CDS | 977..4057 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506195.4 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19099 | |
Clone ID Related Accession (Same CDS sequence) | NM_001364565.1 , XM_006506194.3 , XM_006506195.3 , NM_001109749.1 , XM_006506195.4 , XM_006506193.2 , XM_006506193.3 | |
Accession Version | XM_006506193.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006506193.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506256.1 |
CDS | 534..3614 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506193.2 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu19099 | |
Clone ID Related Accession (Same CDS sequence) | NM_001364565.1 , XM_006506194.3 , XM_006506195.3 , NM_001109749.1 , XM_006506195.4 , XM_006506193.2 , XM_006506193.3 | |
Accession Version | XM_006506193.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006506193.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506256.1 |
CDS | 553..3633 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506193.3 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37318 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506196.2 , XM_017321598.1 , NM_001364566.1 , XM_006506196.3 | |
Accession Version | XM_006506196.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3078bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006506196.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506259.1 |
CDS | 611..3688 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506196.3 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37318 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506196.2 , XM_017321598.1 , NM_001364566.1 , XM_006506196.3 | |
Accession Version | NM_001364566.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3078bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-02 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform 3 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC153596.5, AC162466.6, AC153898.4, AC156281.4, AC153991.3, AC159546.4, AC153988.5 and AC164169.8. On Jun 22, 2018 this sequence version replaced XM_017321598.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1660819.197605.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164132 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001351495.1 |
CDS | 518..3595 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001364566.1 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37318 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506196.2 , XM_017321598.1 , NM_001364566.1 , XM_006506196.3 | |
Accession Version | XM_006506196.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3078bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006506196.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506259.1 |
CDS | 592..3669 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506196.2 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37318 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506196.2 , XM_017321598.1 , NM_001364566.1 , XM_006506196.3 | |
Accession Version | XM_017321598.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3078bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | contactin-4 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017177087.1 |
CDS | 534..3611 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017321598.1 |
1 | ATGAGGTTGC CATGGGAACT GCTAGTGCTG CAATCATTCA TGTTGTGCCT TGCAGATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues. |
Limited impact of Cntn4 mutation on autism-related traits in developing and adult C57BL/6J mice. |
Contactin-4 mediates axon-target specificity and functional development of the accessory optic system. |
Spatially heterogeneous choroid plexus transcriptomes encode positional identity and contribute to regional CSF production. |
Expression of the immunoglobulin superfamily cell adhesion molecules in the developing spinal cord and dorsal root ganglion. |