Gene Symbol | Usp39 |
Entrez Gene ID | 28035 |
Full Name | ubiquitin specific peptidase 39 |
Synonyms | AA408960,AI894154,CGI-21,D6Wsu157e,SAD1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Usp39 cDNA ORF clone
Gene Symbol | Usp39 |
Entrez Gene ID | 28035 |
Full Name | ubiquitin specific peptidase 39 |
Synonyms | AA408960,AI894154,CGI-21,D6Wsu157e,SAD1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006506216.3 | XP_006506279.1 | U4/U6.U5 tri-snRNP-associated protein 2 isoform X2 |
XM_017321609.1 | XP_017177098.1 | U4/U6.U5 tri-snRNP-associated protein 2 isoform X1 |
XM_017321609.2 | XP_017177098.1 | U4/U6.U5 tri-snRNP-associated protein 2 isoform X1 |
XM_006506216.4 | XP_006506279.1 | U4/U6.U5 tri-snRNP-associated protein 2 isoform X2 |
NM_138592.4 | NP_613058.1 | U4/U6.U5 tri-snRNP-associated protein 2 |
Homo sapiens (human) | USP39 | NP_006581.2 |
Canis lupus familiaris (dog) | USP39 | XP_532977.1 |
Bos taurus (cattle) | USP39 | NP_001094615.1 |
Caenorhabditis elegans (roundworm) | F09D1.1 | NP_494298.1 |
Rattus norvegicus (Norway rat) | Usp39 | NP_001100067.1 |
Gallus gallus (chicken) | USP39 | XP_003643514.2 |
Magnaporthe oryzae (rice blast fungus) | MGG_08169 | XP_003715141.1 |
Danio rerio (zebrafish) | usp39 | NP_001073539.1 |
Neurospora crassa | NCU09547 | XP_958766.2 |
Arabidopsis thaliana (thale cress) | AT4G22350 | NP_193966.2 |
Mus musculus (house mouse) | Usp39 | NP_613058.1 |
Drosophila melanogaster (fruit fly) | CG7288 | NP_573334.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP008381 | XP_317070.4 |
Schizosaccharomyces pombe (fission yeast) | ubp10 | NP_595305.1 |
Arabidopsis thaliana (thale cress) | AT4G22285 | NP_001078426.1 |
Pan troglodytes (chimpanzee) | USP39 | XP_515591.2 |
USP39 | XP_001089375.1 | |
Oryza sativa (rice) | Os09g0407900 | NP_001063139.1 |
Xenopus tropicalis (tropical clawed frog) | usp39 | XP_002932588.1 |
High expression of ubiquitin-specific peptidase 39 is associated with the development of vascular remodeling.
He S, Zhong W, Yin L, Wang Y, Qiu Z, Song G
Molecular medicine reports15(5)2567-2573(2017 May)
High-throughput discovery of novel developmental phenotypes.
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, , , , , , , , , MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bu?an M, Murray SA
Nature537(7621)508-514(2016 09)
The level of the transcription factor Pax6 is essential for controlling the balance between neural stem cell self-renewal and neurogenesis.
Sansom SN, Griffiths DS, Faedo A, Kleinjan DJ, Ruan Y, Smith J, van Heyningen V, Rubenstein JL, Livesey FJ
PLoS genetics5(6)e1000511(2009 Jun)
The unfolded protein response contributes to preimplantation mouse embryo death in the DDK syndrome.
Hao L, Vassena R, Wu G, Han Z, Cheng Y, Latham KE, Sapienza C
Biology of reproduction80(5)944-53(2009 May)
Three-dimensional visualization of testis cord morphogenesis, a novel tubulogenic mechanism in development.
Combes AN, Lesieur E, Harley VR, Sinclair AH, Little MH, Wilhelm D, Koopman P
Developmental dynamics : an official publication of the American Association of Anatomists238(5)1033-41(2009 May)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Usp39 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Usp39 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu37335 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506216.3 , XM_006506216.4 | |
Accession Version | XM_006506216.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1722bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | U4/U6.U5 tri-snRNP-associated protein 2 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006506216.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTAGCC GGTCCAAGCG GCAGTCCCAT GGTTCCACCC GCGGGAAGCG TGAGTCCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506279.1 |
CDS | 66..1787 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506216.3 |
1 | ATGTCTAGCC GGTCCAAGCG GCAGTCCCAT GGTTCCACCC GCGGGAAGCG TGAGTCCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu81744 | |
Clone ID Related Accession (Same CDS sequence) | XM_017321609.1 , XM_017321609.2 | |
Accession Version | XM_017321609.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 891bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | U4/U6.U5 tri-snRNP-associated protein 2 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTCTTGT TGGTTCAGCG TTTTGGAGAG CTGATGAGAA AGCTCTGGAA CCCCCGAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017177098.1 |
CDS | 808..1698 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017321609.1 |
1 | ATGTTCTTGT TGGTTCAGCG TTTTGGAGAG CTGATGAGAA AGCTCTGGAA CCCCCGAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu81744 | |
Clone ID Related Accession (Same CDS sequence) | XM_017321609.1 , XM_017321609.2 | |
Accession Version | XM_017321609.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 891bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | U4/U6.U5 tri-snRNP-associated protein 2 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_017321609.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTCTTGT TGGTTCAGCG TTTTGGAGAG CTGATGAGAA AGCTCTGGAA CCCCCGAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017177098.1 |
CDS | 839..1729 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017321609.2 |
1 | ATGTTCTTGT TGGTTCAGCG TTTTGGAGAG CTGATGAGAA AGCTCTGGAA CCCCCGAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu10791 | |
Clone ID Related Accession (Same CDS sequence) | NM_138592.4 | |
Accession Version | NM_138592.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1695bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-19 | |
Organism | Mus musculus(house mouse) | |
Product | U4/U6.U5 tri-snRNP-associated protein 2 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AC116115.11. On Oct 19, 2007 this sequence version replaced NM_138592.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AK018595.1, AK010443.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGTCTAGCC GGTCCAAGCG GCAGTCCCAT GGTTCCACCC GCGGGAAGCG TGAGTCCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_613058.1 |
CDS | 27..1721 |
Translation |
Target ORF information:
Target ORF information:
|
NM_138592.4 |
1 | ATGTCTAGCC GGTCCAAGCG GCAGTCCCAT GGTTCCACCC GCGGGAAGCG TGAGTCCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu37335 | |
Clone ID Related Accession (Same CDS sequence) | XM_006506216.3 , XM_006506216.4 | |
Accession Version | XM_006506216.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1722bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | U4/U6.U5 tri-snRNP-associated protein 2 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006506216.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTAGCC GGTCCAAGCG GCAGTCCCAT GGTTCCACCC GCGGGAAGCG TGAGTCCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006506279.1 |
CDS | 60..1781 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006506216.4 |
1 | ATGTCTAGCC GGTCCAAGCG GCAGTCCCAT GGTTCCACCC GCGGGAAGCG TGAGTCCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
High expression of ubiquitin-specific peptidase 39 is associated with the development of vascular remodeling. |
High-throughput discovery of novel developmental phenotypes. |
The level of the transcription factor Pax6 is essential for controlling the balance between neural stem cell self-renewal and neurogenesis. |
The unfolded protein response contributes to preimplantation mouse embryo death in the DDK syndrome. |
Three-dimensional visualization of testis cord morphogenesis, a novel tubulogenic mechanism in development. |