Gene Symbol | Fan1 |
Entrez Gene ID | 330554 |
Full Name | FANCD2/FANCI-associated nuclease 1 |
Synonyms | 6030441H18Rik,Mtmr15,mFAN1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Fan1 cDNA ORF clone
Gene Symbol | Fan1 |
Entrez Gene ID | 330554 |
Full Name | FANCD2/FANCI-associated nuclease 1 |
Synonyms | 6030441H18Rik,Mtmr15,mFAN1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006540959.3 | XP_006541022.1 | fanconi-associated nuclease 1 isoform X2 |
XM_006540959.4 | XP_006541022.1 | fanconi-associated nuclease 1 isoform X2 |
XM_006540958.3 | XP_006541021.1 | fanconi-associated nuclease 1 isoform X1 |
NM_177893.4 | NP_808561.2 | fanconi-associated nuclease 1 |
NM_177893.3 | NP_808561.2 | fanconi-associated nuclease 1 |
XM_006540958.4 | XP_006541021.1 | fanconi-associated nuclease 1 isoform X1 |
Bos taurus (cattle) | FAN1 | NP_001158142.1 |
Rattus norvegicus (Norway rat) | Fan1 | NP_001178562.1 |
Danio rerio (zebrafish) | fan1 | NP_001038546.2 |
Caenorhabditis elegans (roundworm) | fan-1 | NP_500997.1 |
Neurospora crassa | NCU03036 | XP_964041.2 |
Pan troglodytes (chimpanzee) | FAN1 | XP_510266.2 |
Canis lupus familiaris (dog) | FAN1 | XP_005618326.1 |
Gallus gallus (chicken) | FAN1 | XP_004943817.1 |
Homo sapiens (human) | FAN1 | NP_055782.3 |
Magnaporthe oryzae (rice blast fungus) | MGG_00351 | XP_003718732.1 |
Schizosaccharomyces pombe (fission yeast) | SPBC146.06c | NP_595395.1 |
FAN1 | XP_001109813.1 | |
Mus musculus (house mouse) | Fan1 | NP_808561.2 |
Xenopus tropicalis (tropical clawed frog) | fan1 | XP_002934961.2 |
A FANCD2/FANCI-Associated Nuclease 1-Knockout Model Develops Karyomegalic Interstitial Nephritis.
Airik R, Schueler M, Airik M, Cho J, Porath JD, Mukherjee E, Sims-Lucas S, Hildebrandt F
Journal of the American Society of Nephrology : JASN27(12)3552-3559(2016 Dec)
Upregulation of ?3A Drives Homeostatic Plasticity by Rerouting AMPAR into the Recycling Endosomal Pathway.
Steinmetz CC, Tatavarty V, Sugino K, Shima Y, Joseph A, Lin H, Rutlin M, Lambo M, Hempel CM, Okaty BW, Paradis S, Nelson SB, Turrigiano GG
Cell reports16(10)2711-2722(2016 09)
High-throughput discovery of novel developmental phenotypes.
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, , , , , , , , , MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bu?an M, Murray SA
Nature537(7621)508-514(2016 09)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Our data show that Fan1 is involved in the physiologic response of kidney tubular cells to DNA damage, which contributes to the pathogenesis of chronic kidney disease. Moreover, Fan1(-/-) mice provide a new model with which to study the pathomechanisms of chronic kidney disease
Title: A FANCD2/FANCI-Associated Nuclease 1-Knockout Model Develops Karyomegalic Interstitial Nephritis.
ubiquitin-binding zinc finger (UBZ) domain of FAN1, which is needed for interaction with FANCD2, is not required for the initial rapid recruitment of FAN1 to ICLs or for its role in DNA ICL resistance.
Title: Fan1 deficiency results in DNA interstrand cross-link repair defects, enhanced tissue karyomegaly, and organ dysfunction.
Fan1 nuclease activity promotes ICL repair in a manner that controls ploidy
Title: Karyomegalic interstitial nephritis and DNA damage-induced polyploidy in Fan1 nuclease-defective knock-in mice.
Fan1 recruitment enables processing of stalled forks that is essential for genome stability and health.
Title: Ubiquitinated Fancd2 recruits Fan1 to stalled replication forks to prevent genome instability.
The following Fan1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Fan1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu38897 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540959.3 , XM_006540959.4 | |
Accession Version | XM_006540959.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2154bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | fanconi-associated nuclease 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006540959.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006541022.1 |
CDS | 638..2791 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006540959.3 |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu38897 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540959.3 , XM_006540959.4 | |
Accession Version | XM_006540959.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2154bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | fanconi-associated nuclease 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006540959.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006541022.1 |
CDS | 626..2779 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006540959.4 |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu06998 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540958.3 , NM_177893.4 , NM_177893.3 , XM_006540958.4 | |
Accession Version | XM_006540958.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3063bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | fanconi-associated nuclease 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006540958.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006541021.1 |
CDS | 624..3686 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006540958.4 |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu06998 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540958.3 , NM_177893.4 , NM_177893.3 , XM_006540958.4 | |
Accession Version | NM_177893.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3063bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-11-11 | |
Organism | Mus musculus(house mouse) | |
Product | fanconi-associated nuclease 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC129199.3 and AC139849.5. On Jun 17, 2019 this sequence version replaced NM_177893.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: full length. |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_808561.2 |
CDS | 374..3436 |
Translation |
Target ORF information:
Target ORF information:
|
NM_177893.4 |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu06998 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540958.3 , NM_177893.4 , NM_177893.3 , XM_006540958.4 | |
Accession Version | NM_177893.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3063bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-21 | |
Organism | Mus musculus(house mouse) | |
Product | fanconi-associated nuclease 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC129199.3 and AC139849.5. On or before Sep 10, 2009 this sequence version replaced XM_976717.2, XM_885802.2, NM_177893.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_808561.2 |
CDS | 413..3475 |
Translation |
Target ORF information:
Target ORF information:
|
NM_177893.3 |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu06998 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540958.3 , NM_177893.4 , NM_177893.3 , XM_006540958.4 | |
Accession Version | XM_006540958.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3063bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | fanconi-associated nuclease 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006540958.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006541021.1 |
CDS | 634..3696 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006540958.3 |
1 | ATGCCGTCAC AAAGGAAATC ACCTGATCAA AAAAGACCCC GTAGAAGCTT ATCTACCAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A FANCD2/FANCI-Associated Nuclease 1-Knockout Model Develops Karyomegalic Interstitial Nephritis. |
Upregulation of ?3A Drives Homeostatic Plasticity by Rerouting AMPAR into the Recycling Endosomal Pathway. |
High-throughput discovery of novel developmental phenotypes. |