Gene Symbol | Spef1l |
Entrez Gene ID | 381933 |
Full Name | RIKEN cDNA 6430531B16 gene |
Synonyms | Gm1093 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Spef1l cDNA ORF clone
gRNAs
Gene Symbol | Spef1l |
Entrez Gene ID | 381933 |
Full Name | RIKEN cDNA 6430531B16 gene |
Synonyms | Gm1093 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001033465.3 | NP_001028637.1 | uncharacterized protein LOC381933 isoform 1 |
NM_001347614.1 | NP_001334543.1 | uncharacterized protein LOC381933 isoform 3 |
NM_001359836.1 | NP_001346765.1 | uncharacterized protein LOC381933 isoform 4 |
XM_006536199.2 | XP_006536262.1 | uncharacterized protein LOC381933 isoform X1 |
NM_001033465.2 | NP_001028637.1 | uncharacterized protein LOC381933 isoform 1 |
NM_001347613.1 | NP_001334542.1 | uncharacterized protein LOC381933 isoform 2 |
XM_006536200.1 | XP_006536263.1 | uncharacterized protein LOC381933 isoform X2 |
NM_001347614.2 | NP_001334543.1 | uncharacterized protein LOC381933 isoform 3 |
NM_001347613.2 | NP_001334542.1 | uncharacterized protein LOC381933 isoform 2 |
Mus musculus (house mouse) | 6430531B16Rik | NP_001028637.1 |
Bos taurus (cattle) | LOC101903854 | XP_005225751.1 |
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, Livstone MS, Lewis SE, Thomas PD
Briefings in bioinformatics12(5)449-62(2011 Sep)
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Hansen GM, Markesich DC, Burnett MB, Zhu Q, Dionne KM, Richter LJ, Finnell RH, Sands AT, Zambrowicz BP, Abuin A
Genome research18(10)1670-9(2008 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Spef1l gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Spef1l cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu12696 | |
Clone ID Related Accession (Same CDS sequence) | NM_001033465.3 , NM_001033465.2 | |
Accession Version | NM_001033465.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 924bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-12 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK131789.1 and BF152936.1. On Jan 18, 2018 this sequence version replaced NM_001033465.2. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). ##Evidence-Data-START## Transcript exon combination :: AK131789.1, BC145730.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001028637.1 |
CDS | 74..997 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu12696 | |
Clone ID Related Accession (Same CDS sequence) | NM_001033465.3 , NM_001033465.2 | |
Accession Version | NM_001033465.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 924bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-04-28 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform 1 | |
Comment | Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from AK131789.1. On Apr 6, 2007 this sequence version replaced NM_001033465.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). ##Evidence-Data-START## Transcript exon combination :: AK131789.1, BC145730.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001028637.1 |
CDS | 74..997 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu40070 | |
Clone ID Related Accession (Same CDS sequence) | NM_001359836.1 , XM_006536200.1 | |
Accession Version | NM_001359836.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 756bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-12 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform 4 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC107822.18. On Jan 18, 2018 this sequence version replaced XM_006536200.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC145461.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001346765.1 |
CDS | 74..829 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu40071 | |
Clone ID Related Accession (Same CDS sequence) | NM_001347613.1 , NM_001347613.2 | |
Accession Version | NM_001347613.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 747bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-05-27 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC107822.18. On Dec 2, 2016 this sequence version replaced XM_006536201.1. Transcript Variant: This variant (2) uses an alternate splice junction and lacks an alternate coding exon compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC171930.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001334542.1 |
CDS | 74..820 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu40071 | |
Clone ID Related Accession (Same CDS sequence) | NM_001347613.1 , NM_001347613.2 | |
Accession Version | NM_001347613.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 747bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-12 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC107822.18. On Jan 13, 2018 this sequence version replaced NM_001347613.1. Transcript Variant: This variant (2) uses an alternate splice junction and lacks an alternate coding exon compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC171930.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001334542.1 |
CDS | 74..820 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu75092 | |
Clone ID Related Accession (Same CDS sequence) | NM_001347614.1 , NM_001347614.2 | |
Accession Version | NM_001347614.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 672bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-05-27 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC107822.18. On Dec 2, 2016 this sequence version replaced XM_011249845.1. Transcript Variant: This variant (3) lacks an alternate coding exon compared to variant 1, that causes a frameshift. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC145460.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001334543.1 |
CDS | 74..745 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu75092 | |
Clone ID Related Accession (Same CDS sequence) | NM_001347614.1 , NM_001347614.2 | |
Accession Version | NM_001347614.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 672bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-12 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC107822.18. On Jan 13, 2018 this sequence version replaced NM_001347614.1. Transcript Variant: This variant (3) lacks an alternate coding exon compared to variant 1, that causes a frameshift. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC145460.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001334543.1 |
CDS | 74..745 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu40069 | |
Clone ID Related Accession (Same CDS sequence) | XM_006536199.2 | |
Accession Version | XM_006536199.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 951bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006536199.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006536262.1 |
CDS | 65..1015 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu40070 | |
Clone ID Related Accession (Same CDS sequence) | NM_001359836.1 , XM_006536200.1 | |
Accession Version | XM_006536200.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 756bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein LOC381933 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006536263.1 |
CDS | 65..820 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTCAGTG CTTCCAAGCC GAGCTCAGCT TCGTTCCTGC CAACGCCTGG GGATATTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |