Gene Symbol | BARHL1 |
Entrez Gene ID | 54422 |
Full Name | BarH like homeobox 1 |
Synonyms | Dres115,MBH2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(House mouse) |
Genome |
ORF » Species Summary » Mus musculus » BARHL1 cDNA ORF clone
Gene Symbol | BARHL1 |
Entrez Gene ID | 54422 |
Full Name | BarH like homeobox 1 |
Synonyms | Dres115,MBH2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(House mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006498184.3 | XP_006498247.1 | barH-like 1 homeobox protein isoform X2 |
XM_011239138.2 | XP_011237440.1 | barH-like 1 homeobox protein isoform X1 |
XM_030251884.1 | XP_030107744.1 | barH-like 1 homeobox protein isoform X1 |
XM_030251885.1 | XP_030107745.1 | barH-like 1 homeobox protein isoform X1 |
XM_006498182.3 | XP_006498245.1 | barH-like 1 homeobox protein isoform X1 |
NM_001355435.1 | NP_001342364.1 | barH-like 1 homeobox protein isoform b |
NM_001164186.1 | NP_001157658.1 | barH-like 1 homeobox protein isoform a |
XM_006498182.4 | XP_006498245.1 | barH-like 1 homeobox protein isoform X1 |
XM_030251886.1 | XP_030107746.1 | barH-like 1 homeobox protein isoform X1 |
NM_001355434.1 | NP_001342363.1 | barH-like 1 homeobox protein isoform a |
XM_011239138.3 | XP_011237440.1 | barH-like 1 homeobox protein isoform X1 |
NM_019446.4 | NP_062319.1 | barH-like 1 homeobox protein isoform a |
XM_006498185.3 | XP_006498248.1 | barH-like 1 homeobox protein isoform X3 |
XM_006498183.2 | XP_006498246.1 | barH-like 1 homeobox protein isoform X1 |
Mus musculus (house mouse) | Barhl1 | NP_062319.1 |
Rattus norvegicus (Norway rat) | Barhl1 | NP_476450.1 |
Homo sapiens (human) | BARHL1 | NP_064448.1 |
Xenopus tropicalis (tropical clawed frog) | barhl1 | XP_002936232.1 |
Canis lupus familiaris (dog) | BARHL1 | XP_548404.3 |
Danio rerio (zebrafish) | barhl1b | NP_001018142.1 |
Pan troglodytes (chimpanzee) | BARHL1 | XP_001168385.1 |
LOC722313 | XP_001118474.1 | |
Bos taurus (cattle) | BARHL1 | NP_001193177.1 |
Gallus gallus (chicken) | BARHL1 | XP_427153.3 |
Non-cell autonomous control of precerebellar neuron migration by Slit and Robo proteins.
Dominici C, Rappeneau Q, Zelina P, Fouquet S, Ch?dotal A
Development (Cambridge, England)145(2)(2018 Jan)
Commissural neurons transgress the CNS/PNS boundary in absence of ventricular zone-derived netrin 1.
Moreno-Bravo JA, Roig Puiggros S, Blockus H, Dominici C, Zelina P, Mehlen P, Ch?dotal A
Development (Cambridge, England)145(2)(2018 Jan)
Homozygous ARHGEF2 mutation causes intellectual disability and midbrain-hindbrain malformation.
Ravindran E, Hu H, Yuzwa SA, Hernandez-Miranda LR, Kraemer N, Ninnemann O, Musante L, Boltshauser E, Schindler D, H?bner A, Reinecker HC, Ropers HH, Birchmeier C, Miller FD, Wienker TF, H?bner C, Kaindl AM
PLoS genetics13(4)e1006746(2017 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
expression of Barhl1 decelerates tumor growth both in human and in murine medulloblastomas.
Title: Expression of BARHL1 in medulloblastoma is associated with prolonged survival in mice and humans.
Given the important role of Barhl1 in brain development, it was proposed that perturbations of thyroid hormone -mediated transcriptional control of Barhl1 may play a role in the impaired neurodevelopment induced by hypothyroidism.
Title: Barhl1 is directly regulated by thyroid hormone in the developing cerebellum of mice.
Math1 directly regulates the Mbh genes in CGCs. Furthermore, a dominant-negative form of the Mbh proteins disrupted proper
Title: Transcriptional cascade from Math1 to Mbh1 and Mbh2 is required for cerebellar granule cell differentiation.
High-level, cell-specific Bargl1expression in the inner ear & CNS depends on both its 5' promoter & 3' enhancer sequences. 2 homeoprotein binding motifs can be occupied & activated by Barhl1.
Title: Barhl1 regulatory sequences required for cell-specific gene expression and autoregulation in the inner ear and central nervous system.
Barhl1 is crucially required for the survival but not for the specification of zonal layer neurons in the superior colliculus
Title: Barhl1 is required for maintenance of a large population of neurons in the zonal layer of the superior colliculus.
The following BARHL1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the BARHL1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | XM_030251884.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030107744.1 |
CDS | 1220..2203 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030251884.1 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | XM_030251885.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030107745.1 |
CDS | 1399..2382 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030251885.1 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | XM_006498182.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006498182.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006498245.1 |
CDS | 622..1605 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006498182.4 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | XM_030251886.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030107746.1 |
CDS | 1048..2031 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030251886.1 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | XM_011239138.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011239138.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011237440.1 |
CDS | 973..1956 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011239138.3 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | NM_001164186.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-14 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC055731.1 and AL732526.8. Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC055731.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164141 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157658.1 |
CDS | 460..1443 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001164186.1 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | NM_001355434.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-14 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AF264026.1 and AL732526.8. On Sep 16, 2017 this sequence version replaced XM_006498183.2. Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 all encode the same isoform (a). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF264026.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164141 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001342363.1 |
CDS | 518..1501 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001355434.1 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | NM_019446.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-14 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL732526.8. On Aug 14, 2009 this sequence version replaced NM_019446.3. Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1, 2, and 3 all encode the same isoform (a). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AB043980.1, AK036312.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164141 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_062319.1 |
CDS | 743..1726 |
Translation |
Target ORF information:
Target ORF information:
|
NM_019446.4 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu29639 | |
Clone ID Related Accession (Same CDS sequence) | XM_006498184.3 , NM_001355435.1 | |
Accession Version | NM_001355435.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 555bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-14 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB647969.1 and AL732526.8. On Sep 16, 2017 this sequence version replaced XM_006498184.3. Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus compared to isoform a. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK048063.1, BB647969.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAAACTCA CCGTAAAAGA AGATAAAGAA AGCAGGGTGA AGGAGGAGGG CGACCGCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001342364.1 |
CDS | 24..578 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001355435.1 |
1 | ATGAAACTCA CCGTAAAAGA AGATAAAGAA AGCAGGGTGA AGGAGGAGGG CGACCGCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | XM_011239138.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011239138.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011237440.1 |
CDS | 1754..2737 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011239138.2 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | XM_006498182.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006498182.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006498245.1 |
CDS | 612..1595 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006498182.3 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09628 | |
Clone ID Related Accession (Same CDS sequence) | XM_011239138.2 , XM_030251884.1 , XM_030251885.1 , XM_006498182.3 , NM_001164186.1 , XM_006498182.4 , XM_030251886.1 , NM_001355434.1 , XM_011239138.3 , NM_019446.4 , XM_006498183.2 | |
Accession Version | XM_006498183.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 984bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(House mouse) | |
Product | barH-like 1 homeobox protein isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006498183.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006498246.1 |
CDS | 1271..2254 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006498183.2 |
1 | ATGGAAGGCT CTAATGGCTT TGGGATTGAC TCCATTCTCT CCCACCGAGC GGGCAGCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu29639 | |
Clone ID Related Accession (Same CDS sequence) | XM_006498184.3 , NM_001355435.1 | |
Accession Version | XM_006498184.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 555bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(House mouse) | |
Product | barH-like 1 homeobox protein isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006498184.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAACTCA CCGTAAAAGA AGATAAAGAA AGCAGGGTGA AGGAGGAGGG CGACCGCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006498247.1 |
CDS | 321..875 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006498184.3 |
1 | ATGAAACTCA CCGTAAAAGA AGATAAAGAA AGCAGGGTGA AGGAGGAGGG CGACCGCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu29640 | |
Clone ID Related Accession (Same CDS sequence) | XM_006498185.3 | |
Accession Version | XM_006498185.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 552bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | barH-like 1 homeobox protein isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006498185.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCATTT GCCCAACCGA GGGCTGTAGC GAGGTGAAGG AGGAGGGCGA CCGCGAGATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006498248.1 |
CDS | 203..754 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006498185.3 |
1 | ATGGCCATTT GCCCAACCGA GGGCTGTAGC GAGGTGAAGG AGGAGGGCGA CCGCGAGATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Non-cell autonomous control of precerebellar neuron migration by Slit and Robo proteins. |
Commissural neurons transgress the CNS/PNS boundary in absence of ventricular zone-derived netrin 1. |
Homozygous ARHGEF2 mutation causes intellectual disability and midbrain-hindbrain malformation. |