Gene Symbol | Nisch |
Entrez Gene ID | 64652 |
Full Name | nischarin |
Synonyms | 1200007D05Rik,3202002H23Rik,AW494485,I-1,edsn |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Nisch cDNA ORF clone
gRNAs
Gene Symbol | Nisch |
Entrez Gene ID | 64652 |
Full Name | nischarin |
Synonyms | 1200007D05Rik,3202002H23Rik,AW494485,I-1,edsn |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017316115.1 | XP_017171604.1 | nischarin isoform X1 |
NM_001347583.1 | NP_001334512.1 | nischarin isoform 2 |
NM_022656.2 | NP_073147.2 | nischarin isoform 1 |
XM_017316115.2 | XP_017171604.1 | nischarin isoform X1 |
XM_006519353.2 | XP_006519416.1 | nischarin isoform X1 |
XM_017316116.1 | XP_017171605.1 | nischarin isoform X1 |
Mus musculus (house mouse) | Nisch | NP_073147.2 |
Danio rerio (zebrafish) | nisch | XP_002666276.2 |
Xenopus tropicalis (tropical clawed frog) | nisch | NP_001123817.1 |
Caenorhabditis elegans (roundworm) | CELE_F13E9.1 | NP_502016.2 |
Gallus gallus (chicken) | NISCH | XP_004944436.1 |
Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans.
Gstrein T, Edwards A, P?istoupilov? A, Leca I, Breuss M, Pilat-Carotta S, Hansen AH, Tripathy R, Traunbauer AK, Hochstoeger T, Rosoklija G, Repic M, Landler L, Str?neck? V, D?rnberger G, Keane TM, Zuber J, Adams DJ, Flint J, Honzik T, Gut M, Beltran S, Mechtler K, Sherr E, Kmoch S, Gut I, Keays DA
Nature neuroscience(2018 Jan)
Nischarin inhibition alters energy metabolism by activating AMP-activated protein kinase.
Dong S, Baranwal S, Garcia A, Serrano-Gomez SJ, Eastlack S, Iwakuma T, Mercante D, Mauvais-Jarvis F, Alahari SK
The Journal of biological chemistry292(41)16833-16846(2017 10)
A mutation in Nischarin causes otitis media via LIMK1 and NF-?B pathways.
Crompton M, Purnell T, Tyrer HE, Parker A, Ball G, Hardisty-Hughes RE, Gale R, Williams D, Dean CH, Simon MM, Mallon AM, Wells S, Bhutta MF, Burton MJ, Tateossian H, Brown SDM
PLoS genetics13(8)e1006969(2017 Aug)
Inhibition of Nischarin Expression Promotes Neurite Outgrowth through Regulation of PAK Activity.
Ding Y, Li Y, Lu L, Zhang R, Zeng L, Wang L, Zhang X
PloS one10(12)e0144948(2015)
Improvement of obesity by activation of I1-imidazoline receptors in high fat diet-fed mice.
Chung HH, Cheng J
Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme45(8)581-5(2013 Aug)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
results indicate that Nisch is an important AMPK inhibitor and a critical regulator of energy homeostasis, including lipid and glucose metabolism.
Title: Nischarin inhibition alters energy metabolism by activating AMP-activated protein kinase.
We identified a significant genetic interaction between Nisch and Itga5; mice heterozygous for Itga5-null and homozygous for edison mutations display a significantly increased penetrance and severity of chronic otitis media.
Title: A mutation in Nischarin causes otitis media via LIMK1 and NF-?B pathways.
Nischarin inhibits neurite outgrowth by blocking PAK1 activation in neurons.
Title: Inhibition of Nischarin Expression Promotes Neurite Outgrowth through Regulation of PAK Activity.
Activation of I1-imidazoline receptor ameliorated energy intake and epididymal white adipose tissue accumulation.
Title: Improvement of obesity by activation of I1-imidazoline receptors in high fat diet-fed mice.
Data suggest that both IR1 and IR2 (imidazoline receptor 2) play roles in acquisition of behavioral responses in alcoholism; activation of IR1 and IR2 may serve as molecular targets in prevention (and possibly treatment) of alcoholism.
Title: Agmatine attenuates acquisition but not the expression of ethanol conditioned place preference in mice: a role for imidazoline receptors.
The following Nisch gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Nisch cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu69869 | |
Clone ID Related Accession (Same CDS sequence) | NM_001347583.1 | |
Accession Version | NM_001347583.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1551bp) Protein sequence SNP |
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Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-24 | |
Organism | Mus musculus(house mouse) | |
Product | nischarin isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CJ106892.1, AK160990.1, AK004628.1, AC154446.2 and BY602009.1. On Dec 1, 2016 this sequence version replaced XM_006519354.2. Transcript Variant: This variant (2) lacks multiple exons and includes an alternate 3' terminal exon, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC003270.1, BC066838.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849381, SAMN01164131 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCGGCTG CGACACTCAG CTTCGGCCCT GAGCGGGAGG CCGAGCCTGC CAAGGAGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001334512.1 |
CDS | 165..1715 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCGGCTG CGACACTCAG CTTCGGCCCT GAGCGGGAGG CCGAGCCTGC CAAGGAGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu50222 | |
Clone ID Related Accession (Same CDS sequence) | XM_017316115.1 , XM_017316115.2 , XM_006519353.2 , XM_017316116.1 | |
Accession Version | XM_017316115.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3246bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | nischarin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000080.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_017316115.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTGTAC AGGAAGAGGC CCTGGCCAGC AGCCTCTCAT CCACGGATAG TCTGCCACCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017171604.1 |
CDS | 5006..8251 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTTTGTAC AGGAAGAGGC CCTGGCCAGC AGCCTCTCAT CCACGGATAG TCTGCCACCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu14197 | |
Clone ID Related Accession (Same CDS sequence) | NM_022656.2 | |
Accession Version | NM_022656.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4782bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-23 | |
Organism | Mus musculus(house mouse) | |
Product | nischarin isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CJ106892.1, AK122412.1, BC089329.1, AC154446.2 and BP761152.1. On Sep 8, 2006 this sequence version replaced NM_022656.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164135 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCGGCTG CGACACTCAG CTTCGGCCCT GAGCGGGAGG CCGAGCCTGC CAAGGAGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_073147.2 |
CDS | 165..4946 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCGGCTG CGACACTCAG CTTCGGCCCT GAGCGGGAGG CCGAGCCTGC CAAGGAGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu50222 | |
Clone ID Related Accession (Same CDS sequence) | XM_017316115.1 , XM_017316115.2 , XM_006519353.2 , XM_017316116.1 | |
Accession Version | XM_017316115.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3246bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | nischarin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000080.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTGTAC AGGAAGAGGC CCTGGCCAGC AGCCTCTCAT CCACGGATAG TCTGCCACCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017171604.1 |
CDS | 5004..8249 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTTGTAC AGGAAGAGGC CCTGGCCAGC AGCCTCTCAT CCACGGATAG TCTGCCACCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu50222 | |
Clone ID Related Accession (Same CDS sequence) | XM_017316115.1 , XM_017316115.2 , XM_006519353.2 , XM_017316116.1 | |
Accession Version | XM_006519353.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3246bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | nischarin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000080.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006519353.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTGTAC AGGAAGAGGC CCTGGCCAGC AGCCTCTCAT CCACGGATAG TCTGCCACCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006519416.1 |
CDS | 3999..7244 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTTGTAC AGGAAGAGGC CCTGGCCAGC AGCCTCTCAT CCACGGATAG TCTGCCACCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu50222 | |
Clone ID Related Accession (Same CDS sequence) | XM_017316115.1 , XM_017316115.2 , XM_006519353.2 , XM_017316116.1 | |
Accession Version | XM_017316116.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3246bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | nischarin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000080.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTGTAC AGGAAGAGGC CCTGGCCAGC AGCCTCTCAT CCACGGATAG TCTGCCACCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017171605.1 |
CDS | 2721..5966 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTTGTAC AGGAAGAGGC CCTGGCCAGC AGCCTCTCAT CCACGGATAG TCTGCCACCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans. |
Nischarin inhibition alters energy metabolism by activating AMP-activated protein kinase. |
A mutation in Nischarin causes otitis media via LIMK1 and NF-?B pathways. |
Inhibition of Nischarin Expression Promotes Neurite Outgrowth through Regulation of PAK Activity. |
Improvement of obesity by activation of I1-imidazoline receptors in high fat diet-fed mice. |