Gene Symbol | Clhc1 |
Entrez Gene ID | 73324 |
Full Name | clathrin heavy chain linker domain containing 1 |
Synonyms | 1700034F02Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Clhc1 cDNA ORF clone
gRNAs
Gene Symbol | Clhc1 |
Entrez Gene ID | 73324 |
Full Name | clathrin heavy chain linker domain containing 1 |
Synonyms | 1700034F02Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006514818.1 | XP_006514881.1 | clathrin heavy chain linker domain-containing protein 1 isoform X1 |
XM_030246374.1 | XP_030102234.1 | clathrin heavy chain linker domain-containing protein 1 isoform X3 |
XM_006514818.2 | XP_006514881.1 | clathrin heavy chain linker domain-containing protein 1 isoform X1 |
XM_006514819.2 | XP_006514882.1 | clathrin heavy chain linker domain-containing protein 1 isoform X2 |
XM_006514819.1 | XP_006514882.1 | clathrin heavy chain linker domain-containing protein 1 isoform X2 |
NM_028504.1 | NP_082780.1 | clathrin heavy chain linker domain-containing protein 1 isoform 1 |
NM_001163521.1 | NP_001156993.1 | clathrin heavy chain linker domain-containing protein 1 isoform 2 |
LOC716959 | XP_001114859.2 | |
Rattus norvegicus (Norway rat) | Clhc1 | NP_001013899.1 |
Bos taurus (cattle) | CLHC1 | NP_001095512.2 |
Pan troglodytes (chimpanzee) | CLHC1 | NP_001230838.1 |
Mus musculus (house mouse) | 1700034F02Rik | NP_001156993.1 |
Xenopus tropicalis (tropical clawed frog) | clhc1 | NP_001120407.1 |
Homo sapiens (human) | CLHC1 | NP_689598.2 |
Canis lupus familiaris (dog) | CLHC1 | XP_005626167.1 |
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, Livstone MS, Lewis SE, Thomas PD
Briefings in bioinformatics12(5)449-62(2011 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Clhc1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Clhc1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu16298 | |
Clone ID Related Accession (Same CDS sequence) | XM_006514818.1 , XM_006514818.2 , NM_028504.1 | |
Accession Version | NM_028504.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1791bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-21 | |
Organism | Mus musculus(house mouse) | |
Product | clathrin heavy chain linker domain-containing protein 1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX284634.8 and AK006591.1. On or before Jul 24, 2009 this sequence version replaced XM_904868.2, XM_919028.2, XM_125968.3, XM_901828.2. Transcript Variant: This variant (1) represents the longer variant and encodes the longer isoform (1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK006591.1, BC137683.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_082780.1 |
CDS | 274..2064 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16306 | |
Clone ID Related Accession (Same CDS sequence) | XM_006514819.2 , XM_006514819.1 , NM_001163521.1 | |
Accession Version | NM_001163521.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1758bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-21 | |
Organism | Mus musculus(house mouse) | |
Product | clathrin heavy chain linker domain-containing protein 1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX284634.8, BC144828.1 and AK006591.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The resulting isoform (2) lacks an internal 11-aa segment, compared to isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC144828.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001156993.1 |
CDS | 274..2031 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16298 | |
Clone ID Related Accession (Same CDS sequence) | XM_006514818.1 , XM_006514818.2 , NM_028504.1 | |
Accession Version | XM_006514818.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1791bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | clathrin heavy chain linker domain-containing protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006514881.1 |
CDS | 169..1959 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16306 | |
Clone ID Related Accession (Same CDS sequence) | XM_006514819.2 , XM_006514819.1 , NM_001163521.1 | |
Accession Version | XM_006514819.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1758bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | clathrin heavy chain linker domain-containing protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006514882.1 |
CDS | 169..1926 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu85922 | |
Clone ID Related Accession (Same CDS sequence) | XM_030246374.1 | |
Accession Version | XM_030246374.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1338bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | clathrin heavy chain linker domain-containing protein 1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAAACT TAAAGTTTTG GCAAAAGAGC CTACAGCATT GGTGTATCAC CAGAGAAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030102234.1 |
CDS | 1..1338 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGAAAACT TAAAGTTTTG GCAAAAGAGC CTACAGCATT GGTGTATCAC CAGAGAAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16298 | |
Clone ID Related Accession (Same CDS sequence) | XM_006514818.1 , XM_006514818.2 , NM_028504.1 | |
Accession Version | XM_006514818.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1791bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | clathrin heavy chain linker domain-containing protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006514818.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006514881.1 |
CDS | 183..1973 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16306 | |
Clone ID Related Accession (Same CDS sequence) | XM_006514819.2 , XM_006514819.1 , NM_001163521.1 | |
Accession Version | XM_006514819.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1758bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | clathrin heavy chain linker domain-containing protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006514819.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006514882.1 |
CDS | 183..1940 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCGTCC AAGAAGTAAA CACACATGCA GTTCTCCCTC CTATCGTTAG TAGAAATGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. |