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Whrn cDNA ORF clone, Mus musculus (house mouse)

Gene Symbol Whrn
Entrez Gene ID 73750
Full Name whirlin
Synonyms 1110035G07Rik, AW122018, AW742671, C430046P22Rik, Dfnb31, wi
Gene Type protein-coding
Organism Mus musculus (house mouse)
Genome

4

4 33.97 cM|4 C1

Summary This gene encodes a protein required for elongation and actin polymerization in the hair cell stereocilia. The encoded protein is localized to the cytoplasm and co-localizes with the growing end of actin filaments. Mutations in this gene have been linked to deafness. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2013]. lac of sum

mRNA and Protein(s)

mRNA Protein Name
XM_006538309 XP_006538372 whirlin isoform X1
XM_011250121 XP_011248423 whirlin isoform X2
XM_011250122 XP_011248424 whirlin isoform X3
NM_028640 NP_082916 whirlin isoform 1
NM_001008791 NP_001008791 whirlin isoform 2
NM_001008792 NP_001008792 whirlin isoform 3
NM_001008793 NP_001008793 whirlin isoform 4
NM_001276371 NP_001263300 whirlin isoform 10


Homo sapiens (human) DFNB31 NP_056219.3
Pan troglodytes (chimpanzee) DFNB31 XP_001145880.3
Macaca mulatta (Rhesus monkey) DFNB31 XP_001096493.2
Canis lupus familiaris (dog) DFNB31 XP_005627013.1
Bos taurus (cattle) DFNB31 XP_005210632.1
Mus musculus (house mouse) Whrn NP_001008793.1
Rattus norvegicus (Norway rat) Dfnb31 NP_851602.1
Gallus gallus (chicken) DFNB31 XP_427028.4
Danio rerio (zebrafish) LOC100334777 XP_002665968.3
Xenopus (Silurana) tropicalis (western clawed frog) dfnb31 XP_004916786.1


GeneRIFs: Gene References Into Functions What's a GeneRIF?

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

The following Whrn gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Whrn cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID RefSeq Accession Definition **Vector *Turnaround time Price (USD) Select
OMu33174 XM_006538309 PREDICTED: Mus musculus whirlin (Whrn), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $475.30
$679.00
OMu71056 XM_011250121 PREDICTED: Mus musculus whirlin (Whrn), transcript variant X3, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $307.30
$439.00
OMu71057 XM_011250122 PREDICTED: Mus musculus whirlin (Whrn), transcript variant X5, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $307.30
$439.00
OMu17750 NM_028640 Mus musculus whirlin (Whrn), transcript variant 1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $475.30
$679.00
OMu17685 NM_001008791 Mus musculus whirlin (Whrn), transcript variant 2, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $475.30
$679.00
OMu17862 NM_001008792 Mus musculus whirlin (Whrn), transcript variant 3, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $475.30
$679.00
OMu17807 NM_001008793 Mus musculus whirlin (Whrn), transcript variant 4, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $475.30
$679.00
OMu17779 NM_001276371 Mus musculus whirlin (Whrn), transcript variant 10, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $139.30
$199.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.


CloneID OMu33174
Clone ID Related Accession (Same CDS sequence) XM_006538309
Accession Version XM_006538309.2 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 2754bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Insert Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product whirlin isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_187032.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced gi:568927492. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGG AGCGGCTGCT GTGGCTTATA GACCTGATGG AGAATACATT AGACCTGGAA
GGAACCGGTG AGACCACCCA GGGCAGCACC AACGCTCTCC CGGATGTGTC TGTGGATGAT
GTCAAATCCC CCTCAGAAGA TCTGCCTGGT ATCAAGCCAC CTCCTCCCCC ACCACCCCTG
GCTCAAGGTC ATGACCGCTT GCTTGGCCAG CCACGGAAGC CAGGGAGGGA GGACCCCGCA
CCTCTGTCTT CTGCTGCCCA CTCAGGCATT GTCTTCTCAG CACCACGGAA CCGCAGCCCG
CCGCCAGGGA CTGCTCCCAC TCCGGGACCT TCCTCAGCAC AGGACTCTCC CTCCTCCCCC
ATTTATGCCT CCATCTCCCA TGCCAACCCC AGTTCCAGAA AGCCGCTGGA CACCCACCTG
GCCCTGGTTA ACCAGCACCC CATCGGCCCC TTCCCTCGAG TCCAGTCCCC ACCTCACCTG
AAGAGCCCTC CTGCAGAGAC CCCAGGAGCT GGGGCCTGCC TTCCACCACC ATCACCCTCT
GAACACCCTG ACGCCGTGGG TGCAAACCAG CACTTTGTTC TGGTGGAGGT GCACCGTCCG
GACAGTGAGC CTGATGTGAA TGAAGTGCGG GCTCTGCCCC AGACTCGCAC CTCCACACTC
TCTCAGCTCT CAGACAGTGG GCAGACCCTG AGCGAGGACA GTGGCGTGGA TGCCGGGGAG
ACGGAGGCCA GCACCTCAGG CCGAGGCAGA CAGACAGCAT CCGCTAAGAA CAAGAATGGC
AAGGAGCAGC CCCGGACGGA GAGGACCGCG GAGGGTGCCA ACAAACCTCC CGGCCTGCTG
GAGCCAACGT CCACCCTGGT CCGTGTGAGG AAAAGTGCAG CCACACTGGG CATCGCCATT
GAGGGCGGTG CCAACACACG CCAGCCTCTG CCCAGGATCG TCACAATTCA GCGAGGAGGT
TCTGCCCATA ACTGTGGACA GCTCAAGGTG GGCCACGTAA TTCTGGAAGT GAATGGGCAG
ACACTTCGGG GTAAGGAGCA CAAGGAGGCC GCCCGAATCA TCGCTGAGGC CTTCAAGACC
AAGGAGAGAG ACTACATCGA CTTTCTGGTC ACTGAGTTCA ACGTGATGCT CTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_006538372.1
CDS845..3598
Misc Feature(1)956..1183(+)
Misc Feature(2)962..1045(+)
Misc Feature(3)1259..1492(+)
Misc Feature(4)1298..1474(+)
Misc Feature(5)1676..1918(+)
Misc Feature(6)1712..1888(+)
Misc Feature(7)2102..2344(+)
Misc Feature(8)2105..2197(+)
Misc Feature(9)3320..3535(+)
Misc Feature(10)3350..3529(+)
Translation

Target ORF information:

RefSeq Version XM_006538309
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus whirlin (Whrn), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
XM_006538309

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGG AGCGGCTGCT GTGGCTTATA GACCTGATGG AGAATACATT AGACCTGGAA
GGAACCGGTG AGACCACCCA GGGCAGCACC AACGCTCTCC CGGATGTGTC TGTGGATGAT
GTCAAATCCC CCTCAGAAGA TCTGCCTGGT ATCAAGCCAC CTCCTCCCCC ACCACCCCTG
GCTCAAGGTC ATGACCGCTT GCTTGGCCAG CCACGGAAGC CAGGGAGGGA GGACCCCGCA
CCTCTGTCTT CTGCTGCCCA CTCAGGCATT GTCTTCTCAG CACCACGGAA CCGCAGCCCG
CCGCCAGGGA CTGCTCCCAC TCCGGGACCT TCCTCAGCAC AGGACTCTCC CTCCTCCCCC
ATTTATGCCT CCATCTCCCA TGCCAACCCC AGTTCCAGAA AGCCGCTGGA CACCCACCTG
GCCCTGGTTA ACCAGCACCC CATCGGCCCC TTCCCTCGAG TCCAGTCCCC ACCTCACCTG
AAGAGCCCTC CTGCAGAGAC CCCAGGAGCT GGGGCCTGCC TTCCACCACC ATCACCCTCT
GAACACCCTG ACGCCGTGGG TGCAAACCAG CACTTTGTTC TGGTGGAGGT GCACCGTCCG
GACAGTGAGC CTGATGTGAA TGAAGTGCGG GCTCTGCCCC AGACTCGCAC CTCCACACTC
TCTCAGCTCT CAGACAGTGG GCAGACCCTG AGCGAGGACA GTGGCGTGGA TGCCGGGGAG
ACGGAGGCCA GCACCTCAGG CCGAGGCAGA CAGACAGCAT CCGCTAAGAA CAAGAATGGC
AAGGAGCAGC CCCGGACGGA GAGGACCGCG GAGGGTGCCA ACAAACCTCC CGGCCTGCTG
GAGCCAACGT CCACCCTGGT CCGTGTGAGG AAAAGTGCAG CCACACTGGG CATCGCCATT
GAGGGCGGTG CCAACACACG CCAGCCTCTG CCCAGGATCG TCACAATTCA GCGAGGAGGT
TCTGCCCATA ACTGTGGACA GCTCAAGGTG GGCCACGTAA TTCTGGAAGT GAATGGGCAG
ACACTTCGGG GTAAGGAGCA CAAGGAGGCC GCCCGAATCA TCGCTGAGGC CTTCAAGACC
AAGGAGAGAG ACTACATCGA CTTTCTGGTC ACTGAGTTCA ACGTGATGCT CTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu71056
Clone ID Related Accession (Same CDS sequence) XM_011250121
Accession Version XM_011250121.1 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 1683bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Insert Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product whirlin isoform X2
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_187032.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGG TGAGCCACCC CTGCCCTATC CTTGAATACA TTAGACCTGG AAGGAACCGG
TGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_011248423.1
CDS846..2528
Misc Feature(1)957..1184(+)
Misc Feature(2)963..1046(+)
Misc Feature(3)1260..1493(+)
Misc Feature(4)1299..1475(+)
Misc Feature(5)1677..1919(+)
Misc Feature(6)1713..1889(+)
Misc Feature(7)2103..2345(+)
Misc Feature(8)2106..2198(+)
Translation

Target ORF information:

RefSeq Version XM_011250121
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus whirlin (Whrn), transcript variant X3, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
XM_011250121

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGG TGAGCCACCC CTGCCCTATC CTTGAATACA TTAGACCTGG AAGGAACCGG
TGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu71057
Clone ID Related Accession (Same CDS sequence) XM_011250122
Accession Version XM_011250122.1 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 1635bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Insert Structure linear
Update Date 09-FEB-2015
Organism Mus musculus (house mouse)
Product whirlin isoform X3
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_187032.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGG TGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_011248424.1
CDS846..2480
Misc Feature(1)957..1184(+)
Misc Feature(2)963..1046(+)
Misc Feature(3)1260..1493(+)
Misc Feature(4)1299..1475(+)
Misc Feature(5)1677..1919(+)
Misc Feature(6)1713..1889(+)
Misc Feature(7)2103..2345(+)
Misc Feature(8)2106..2198(+)
Translation

Target ORF information:

RefSeq Version XM_011250122
Organism Mus musculus (house mouse)
Definition PREDICTED: Mus musculus whirlin (Whrn), transcript variant X5, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
XM_011250122

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGG TGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu17750
Clone ID Related Accession (Same CDS sequence) NM_028640
Accession Version NM_028640.2 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 2724bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Insert Structure linear
Update Date 15-FEB-2015
Organism Mus musculus (house mouse)
Product whirlin isoform 1
Comment REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK157955.1 and AY739114.1. On Feb 9, 2013 this sequence version replaced gi:57012339. Transcript Variant: This variant (1) lacks an in-frame exon in the 3' coding region, compared to variant 2. The encoded isoform (1) is shorter than isoform 2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AY739114.1, BC150757.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGA ATACATTAGA CCTGGAAGGA ACCGGTGAGA CCACCCAGGG CAGCACCAAC
GCTCTCCCGG ATGTGTCTGT GGATGATGTC AAATCCCCCT CAGAAGATCT GCCTGGTATC
AAGCCACCTC CTCCCCCACC ACCCCTGGCT CAAGGTCATG ACCGCTTGCT TGGCCAGCCA
CGGAAGCCAG GGAGGGAGGA CCCCGCACCT CTGTCTTCTG CTGCCCACTC AGGCATTGTC
TTCTCAGCAC CACGGAACCG CAGCCCGCCG CCAGGGACTG CTCCCACTCC GGGACCTTCC
TCAGCACAGG ACTCTCCCTC CTCCCCCATT TATGCCTCCA TCTCCCATGC CAACCCCAGT
TCCAGAAAGC CGCTGGACAC CCACCTGGCC CTGGTTAACC AGCACCCCAT CGGCCCCTTC
CCTCGAGTCC AGTCCCCACC TCACCTGAAG AGCCCTCCTG CAGAGACCCC AGGAGCTGGG
GCCTGCCTTC CACCACCATC ACCCTCTGAA CACCCTGACG CCGTGGGTGC AAACCAGCAC
TTTGTTCTGG TGGAGGTGCA CCGTCCGGAC AGTGAGCCTG ATGTGAATGA AGTGCGGGCT
CTGCCCCAGA CTCGCACAGC CTCCACACTC TCTCAGCTCT CAGACAGTGG GCAGACCCTG
AGCGAGGACA GTGGCGTGGA TGCCGGGGAG ACGGAGGCCA GCACCTCAGG CCGAGGCAGA
CAGACAGCAT CCGCTAAGAA CAAGAATGGC AAGGAGCAGC CCCGGACGGA GAGGACCGCG
GAGGGTGCCA ACAAACCTCC CGGCCTGCTG GAGCCAACGT CCACCCTGGT CCGTGTGAGG
AAAAGTGCAG CCACACTGGG CATCGCCATT GAGGGCGGTG CCAACACACG CCAGCCTCTG
CCCAGGATCG TCACAATTCA GCGAGGAGGT TCTGCCCATA ACTGTGGACA GCTCAAGGTG
GGCCACGTAA TTCTGGAAGT GAATGGGCAG ACACTTCGGG GTAAGGAGCA CAAGGAGGCC
GCCCGAATCA TCGCTGAGGC CTTCAAGACC AAGGAGAGAG ACTACATCGA CTTTCTGGTC
ACTGAGTTCA ACGTGATGCT CTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_082916.1
CDS759..3482
Misc Feature(1)606..608(+)
Misc Feature(2)870..1097(+)
Misc Feature(3)876..959(+)
Misc Feature(4)1173..1406(+)
Misc Feature(5)1212..1388(+)
Misc Feature(6)1590..1832(+)
Misc Feature(7)1626..1802(+)
Misc Feature(8)2016..2258(+)
Misc Feature(9)2019..2111(+)
Misc Feature(10)3204..3419(+)
Misc Feature(11)3234..3413(+)
Exon (1)1..1379
Gene:Whrn
Gene Synonym:
Exon (2)1380..1598
Gene:Whrn
Gene Synonym:
Exon (3)1599..1724
Gene:Whrn
Gene Synonym:
Exon (4)1725..1927
Gene:Whrn
Gene Synonym:
Exon (5)1928..1964
Gene:Whrn
Gene Synonym:
Exon (6)1965..2177
Gene:Whrn
Gene Synonym:
Exon (7)2178..2387
Gene:Whrn
Gene Synonym:
Exon (8)2388..2459
Gene:Whrn
Gene Synonym:
Exon (9)2460..2994
Gene:Whrn
Gene Synonym:
Exon (10)2995..3176
Gene:Whrn
Gene Synonym:
Exon (11)3177..3299
Gene:Whrn
Gene Synonym:
Exon (12)3300..4056
Gene:Whrn
Gene Synonym:
Translation

Target ORF information:

RefSeq Version NM_028640
Organism Mus musculus (house mouse)
Definition Mus musculus whirlin (Whrn), transcript variant 1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
NM_028640

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGA ATACATTAGA CCTGGAAGGA ACCGGTGAGA CCACCCAGGG CAGCACCAAC
GCTCTCCCGG ATGTGTCTGT GGATGATGTC AAATCCCCCT CAGAAGATCT GCCTGGTATC
AAGCCACCTC CTCCCCCACC ACCCCTGGCT CAAGGTCATG ACCGCTTGCT TGGCCAGCCA
CGGAAGCCAG GGAGGGAGGA CCCCGCACCT CTGTCTTCTG CTGCCCACTC AGGCATTGTC
TTCTCAGCAC CACGGAACCG CAGCCCGCCG CCAGGGACTG CTCCCACTCC GGGACCTTCC
TCAGCACAGG ACTCTCCCTC CTCCCCCATT TATGCCTCCA TCTCCCATGC CAACCCCAGT
TCCAGAAAGC CGCTGGACAC CCACCTGGCC CTGGTTAACC AGCACCCCAT CGGCCCCTTC
CCTCGAGTCC AGTCCCCACC TCACCTGAAG AGCCCTCCTG CAGAGACCCC AGGAGCTGGG
GCCTGCCTTC CACCACCATC ACCCTCTGAA CACCCTGACG CCGTGGGTGC AAACCAGCAC
TTTGTTCTGG TGGAGGTGCA CCGTCCGGAC AGTGAGCCTG ATGTGAATGA AGTGCGGGCT
CTGCCCCAGA CTCGCACAGC CTCCACACTC TCTCAGCTCT CAGACAGTGG GCAGACCCTG
AGCGAGGACA GTGGCGTGGA TGCCGGGGAG ACGGAGGCCA GCACCTCAGG CCGAGGCAGA
CAGACAGCAT CCGCTAAGAA CAAGAATGGC AAGGAGCAGC CCCGGACGGA GAGGACCGCG
GAGGGTGCCA ACAAACCTCC CGGCCTGCTG GAGCCAACGT CCACCCTGGT CCGTGTGAGG
AAAAGTGCAG CCACACTGGG CATCGCCATT GAGGGCGGTG CCAACACACG CCAGCCTCTG
CCCAGGATCG TCACAATTCA GCGAGGAGGT TCTGCCCATA ACTGTGGACA GCTCAAGGTG
GGCCACGTAA TTCTGGAAGT GAATGGGCAG ACACTTCGGG GTAAGGAGCA CAAGGAGGCC
GCCCGAATCA TCGCTGAGGC CTTCAAGACC AAGGAGAGAG ACTACATCGA CTTTCTGGTC
ACTGAGTTCA ACGTGATGCT CTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu17685
Clone ID Related Accession (Same CDS sequence) NM_001008791
Accession Version NM_001008791.2 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 2757bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Insert Structure linear
Update Date 15-FEB-2015
Organism Mus musculus (house mouse)
Product whirlin isoform 2
Comment REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK157955.1 and AY739115.1. On Feb 9, 2013 this sequence version replaced gi:57012337. Transcript Variant: This variant (2) represents the longest transcript and encodes the longest isoform (2). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AY739115.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGG AGCGGCTGCT GTGGCTTATA GACCTGATGG AGAATACATT AGACCTGGAA
GGAACCGGTG AGACCACCCA GGGCAGCACC AACGCTCTCC CGGATGTGTC TGTGGATGAT
GTCAAATCCC CCTCAGAAGA TCTGCCTGGT ATCAAGCCAC CTCCTCCCCC ACCACCCCTG
GCTCAAGGTC ATGACCGCTT GCTTGGCCAG CCACGGAAGC CAGGGAGGGA GGACCCCGCA
CCTCTGTCTT CTGCTGCCCA CTCAGGCATT GTCTTCTCAG CACCACGGAA CCGCAGCCCG
CCGCCAGGGA CTGCTCCCAC TCCGGGACCT TCCTCAGCAC AGGACTCTCC CTCCTCCCCC
ATTTATGCCT CCATCTCCCA TGCCAACCCC AGTTCCAGAA AGCCGCTGGA CACCCACCTG
GCCCTGGTTA ACCAGCACCC CATCGGCCCC TTCCCTCGAG TCCAGTCCCC ACCTCACCTG
AAGAGCCCTC CTGCAGAGAC CCCAGGAGCT GGGGCCTGCC TTCCACCACC ATCACCCTCT
GAACACCCTG ACGCCGTGGG TGCAAACCAG CACTTTGTTC TGGTGGAGGT GCACCGTCCG
GACAGTGAGC CTGATGTGAA TGAAGTGCGG GCTCTGCCCC AGACTCGCAC AGCCTCCACA
CTCTCTCAGC TCTCAGACAG TGGGCAGACC CTGAGCGAGG ACAGTGGCGT GGATGCCGGG
GAGACGGAGG CCAGCACCTC AGGCCGAGGC AGACAGACAG CATCCGCTAA GAACAAGAAT
GGCAAGGAGC AGCCCCGGAC GGAGAGGACC GCGGAGGGTG CCAACAAACC TCCCGGCCTG
CTGGAGCCAA CGTCCACCCT GGTCCGTGTG AGGAAAAGTG CAGCCACACT GGGCATCGCC
ATTGAGGGCG GTGCCAACAC ACGCCAGCCT CTGCCCAGGA TCGTCACAAT TCAGCGAGGA
GGTTCTGCCC ATAACTGTGG ACAGCTCAAG GTGGGCCACG TAATTCTGGA AGTGAATGGG
CAGACACTTC GGGGTAAGGA GCACAAGGAG GCCGCCCGAA TCATCGCTGA GGCCTTCAAG
ACCAAGGAGA GAGACTACAT CGACTTTCTG GTCACTGAGT TCAACGTGAT GCTCTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001008791.1
CDS759..3515
Misc Feature(1)606..608(+)
Misc Feature(2)870..1097(+)
Misc Feature(3)876..959(+)
Misc Feature(4)1173..1406(+)
Misc Feature(5)1212..1388(+)
Misc Feature(6)1590..1832(+)
Misc Feature(7)1626..1802(+)
Misc Feature(8)2016..2258(+)
Misc Feature(9)2019..2111(+)
Misc Feature(10)3237..3452(+)
Misc Feature(11)3267..3446(+)
Exon (1)1..1379
Gene:Whrn
Gene Synonym:
Exon (2)1380..1598
Gene:Whrn
Gene Synonym:
Exon (3)1599..1724
Gene:Whrn
Gene Synonym:
Exon (4)1725..1927
Gene:Whrn
Gene Synonym:
Exon (5)1928..1964
Gene:Whrn
Gene Synonym:
Exon (6)1965..2177
Gene:Whrn
Gene Synonym:
Exon (7)2178..2387
Gene:Whrn
Gene Synonym:
Exon (8)2388..2420
Gene:Whrn
Gene Synonym:
Exon (9)2421..2492
Gene:Whrn
Gene Synonym:
Exon (10)2493..3027
Gene:Whrn
Gene Synonym:
Exon (11)3028..3209
Gene:Whrn
Gene Synonym:
Exon (12)3210..3332
Gene:Whrn
Gene Synonym:
Exon (13)3333..4089
Gene:Whrn
Gene Synonym:
Translation

Target ORF information:

RefSeq Version NM_001008791
Organism Mus musculus (house mouse)
Definition Mus musculus whirlin (Whrn), transcript variant 2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
NM_001008791

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGG AGCGGCTGCT GTGGCTTATA GACCTGATGG AGAATACATT AGACCTGGAA
GGAACCGGTG AGACCACCCA GGGCAGCACC AACGCTCTCC CGGATGTGTC TGTGGATGAT
GTCAAATCCC CCTCAGAAGA TCTGCCTGGT ATCAAGCCAC CTCCTCCCCC ACCACCCCTG
GCTCAAGGTC ATGACCGCTT GCTTGGCCAG CCACGGAAGC CAGGGAGGGA GGACCCCGCA
CCTCTGTCTT CTGCTGCCCA CTCAGGCATT GTCTTCTCAG CACCACGGAA CCGCAGCCCG
CCGCCAGGGA CTGCTCCCAC TCCGGGACCT TCCTCAGCAC AGGACTCTCC CTCCTCCCCC
ATTTATGCCT CCATCTCCCA TGCCAACCCC AGTTCCAGAA AGCCGCTGGA CACCCACCTG
GCCCTGGTTA ACCAGCACCC CATCGGCCCC TTCCCTCGAG TCCAGTCCCC ACCTCACCTG
AAGAGCCCTC CTGCAGAGAC CCCAGGAGCT GGGGCCTGCC TTCCACCACC ATCACCCTCT
GAACACCCTG ACGCCGTGGG TGCAAACCAG CACTTTGTTC TGGTGGAGGT GCACCGTCCG
GACAGTGAGC CTGATGTGAA TGAAGTGCGG GCTCTGCCCC AGACTCGCAC AGCCTCCACA
CTCTCTCAGC TCTCAGACAG TGGGCAGACC CTGAGCGAGG ACAGTGGCGT GGATGCCGGG
GAGACGGAGG CCAGCACCTC AGGCCGAGGC AGACAGACAG CATCCGCTAA GAACAAGAAT
GGCAAGGAGC AGCCCCGGAC GGAGAGGACC GCGGAGGGTG CCAACAAACC TCCCGGCCTG
CTGGAGCCAA CGTCCACCCT GGTCCGTGTG AGGAAAAGTG CAGCCACACT GGGCATCGCC
ATTGAGGGCG GTGCCAACAC ACGCCAGCCT CTGCCCAGGA TCGTCACAAT TCAGCGAGGA
GGTTCTGCCC ATAACTGTGG ACAGCTCAAG GTGGGCCACG TAATTCTGGA AGTGAATGGG
CAGACACTTC GGGGTAAGGA GCACAAGGAG GCCGCCCGAA TCATCGCTGA GGCCTTCAAG
ACCAAGGAGA GAGACTACAT CGACTTTCTG GTCACTGAGT TCAACGTGAT GCTCTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu17862
Clone ID Related Accession (Same CDS sequence) NM_001008792
Accession Version NM_001008792.2 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 2736bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Insert Structure linear
Update Date 15-FEB-2015
Organism Mus musculus (house mouse)
Product whirlin isoform 3
Comment REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK157955.1 and AY739116.1. On Feb 9, 2013 this sequence version replaced gi:57862815. Transcript Variant: This variant (3) uses an alternate in-frame splice site and lacks an in-frame exon in the coding region, compared to variant 2. The encoded isoform (3) is shorter than isoform 2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AY739116.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TCTGGTCTCA GGTTTCCAGG GGACCACACA
GAAGAAGGGA CAAGCAAGCC AGGATTTTAC AAGGGCCCAG CCGGCTCCCA GGTGACCCTG
AGCAGCCTGG GGAATCAGAC TCGTGCACTG CTGGACGACC AAGCCAGGCA CCTGCTGACA
GAGCAGGAGC GCGCCACCAT GATGTACTAC CTGGCCCAGT ACCGTGGTGG CACCATCTCT
GTGGAGGCCA TGGTCATGGC ACTGTTTGAG TTGCTCAACA CACACGCCAA GTTCTCACTC
CTGTCTGAGG TGAGAAGCAT CATCTCACCC CAAGACCTGG ACCGCTTTGA CCACCTGGTG
CTGAGGCGCG AGATCGAGTC TATGAAGGCG AGGCAGCCCC CCGGCCCCGG GGTTGGAGAC
ACGTATTCCA TGGTTTCCTA CAGCGACACA GGCTCATCCA CAGGCAGCCA CGGCACCTCT
ACAACCGTCA GCTCGGCCAG GAATACATTA GACCTGGAAG GAACCGGTGA GACCACCCAG
GGCAGCACCA ACGCTCTCCC GGATGTGTCT GTGGATGATG TCAAATCCCC CTCAGAAGAT
CTGCCTGGTA TCAAGCCACC TCCTCCCCCA CCACCCCTGG CTCAAGGTCA TGACCGCTTG
CTTGGCCAGC CACGGAAGCC AGGGAGGGAG GACCCCGCAC CTCTGTCTTC TGCTGCCCAC
TCAGGCATTG TCTTCTCAGC ACCACGGAAC CGCAGCCCGC CGCCAGGGAC TGCTCCCACT
CCGGGACCTT CCTCAGCACA GGACTCTCCC TCCTCCCCCA TTTATGCCTC CATCTCCCAT
GCCAACCCCA GTTCCAGAAA GCCGCTGGAC ACCCACCTGG CCCTGGTTAA CCAGCACCCC
ATCGGCCCCT TCCCTCGAGT CCAGTCCCCA CCTCACCTGA AGAGCCCTCC TGCAGAGACC
CCAGGAGCTG GGGCCTGCCT TCCACCACCA TCACCCTCTG AACACCCTGA CGCCGTGGGT
GCAAACCAGC ACTTTGTTCT GGTGGAGGTG CACCGTCCGG ACAGTGAGCC TGATGTGAAT
GAAGTGCGGG CTCTGCCCCA GACTCGCACA GCCTCCACAC TCTCTCAGCT CTCAGACAGT
GGGCAGACCC TGAGCGAGGA CAGTGGCGTG GATGCCGGGG AGACGGAGGC CAGCACCTCA
GGCCGAGGCA GACAGACAGC ATCCGCTAAG AACAAGAATG GCAAGGAGCA GCCCCGGACG
GAGAGGACCG CGGAGGGTGC CAACAAACCT CCCGGCCTGC TGGAGCCAAC GTCCACCCTG
GTCCGTGTGA GGAAAAGTGC AGCCACACTG GGCATCGCCA TTGAGGGCGG TGCCAACACA
CGCCAGCCTC TGCCCAGGAT CGTCACAATT CAGCGAGGAG GTTCTGCCCA TAACTGTGGA
CAGCTCAAGG TGGGCCACGT AATTCTGGAA GTGAATGGGC AGACACTTCG GGGTAAGGAG
CACAAGGAGG CCGCCCGAAT CATCGCTGAG GCCTTCAAGA CCAAGGAGAG AGACTACATC
GACTTTCTGG TCACTGAGTT CAACGTGATG CTCTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001008792.1
CDS759..3494
Misc Feature(1)606..608(+)
Misc Feature(2)870..1097(+)
Misc Feature(3)876..959(+)
Misc Feature(4)1173..1406(+)
Misc Feature(5)1212..1388(+)
Misc Feature(6)1590..1832(+)
Misc Feature(7)1626..1802(+)
Misc Feature(8)2028..2270(+)
Misc Feature(9)2031..2123(+)
Misc Feature(10)3216..3431(+)
Misc Feature(11)3246..3425(+)
Exon (1)1..1379
Gene:Whrn
Gene Synonym:
Exon (2)1380..1598
Gene:Whrn
Gene Synonym:
Exon (3)1599..1724
Gene:Whrn
Gene Synonym:
Exon (4)1725..1939
Gene:Whrn
Gene Synonym:
Exon (5)1940..1976
Gene:Whrn
Gene Synonym:
Exon (6)1977..2189
Gene:Whrn
Gene Synonym:
Exon (7)2190..2399
Gene:Whrn
Gene Synonym:
Exon (8)2400..2471
Gene:Whrn
Gene Synonym:
Exon (9)2472..3006
Gene:Whrn
Gene Synonym:
Exon (10)3007..3188
Gene:Whrn
Gene Synonym:
Exon (11)3189..3311
Gene:Whrn
Gene Synonym:
Exon (12)3312..4068
Gene:Whrn
Gene Synonym:
Translation

Target ORF information:

RefSeq Version NM_001008792
Organism Mus musculus (house mouse)
Definition Mus musculus whirlin (Whrn), transcript variant 3, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
NM_001008792

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TCTGGTCTCA GGTTTCCAGG GGACCACACA
GAAGAAGGGA CAAGCAAGCC AGGATTTTAC AAGGGCCCAG CCGGCTCCCA GGTGACCCTG
AGCAGCCTGG GGAATCAGAC TCGTGCACTG CTGGACGACC AAGCCAGGCA CCTGCTGACA
GAGCAGGAGC GCGCCACCAT GATGTACTAC CTGGCCCAGT ACCGTGGTGG CACCATCTCT
GTGGAGGCCA TGGTCATGGC ACTGTTTGAG TTGCTCAACA CACACGCCAA GTTCTCACTC
CTGTCTGAGG TGAGAAGCAT CATCTCACCC CAAGACCTGG ACCGCTTTGA CCACCTGGTG
CTGAGGCGCG AGATCGAGTC TATGAAGGCG AGGCAGCCCC CCGGCCCCGG GGTTGGAGAC
ACGTATTCCA TGGTTTCCTA CAGCGACACA GGCTCATCCA CAGGCAGCCA CGGCACCTCT
ACAACCGTCA GCTCGGCCAG GAATACATTA GACCTGGAAG GAACCGGTGA GACCACCCAG
GGCAGCACCA ACGCTCTCCC GGATGTGTCT GTGGATGATG TCAAATCCCC CTCAGAAGAT
CTGCCTGGTA TCAAGCCACC TCCTCCCCCA CCACCCCTGG CTCAAGGTCA TGACCGCTTG
CTTGGCCAGC CACGGAAGCC AGGGAGGGAG GACCCCGCAC CTCTGTCTTC TGCTGCCCAC
TCAGGCATTG TCTTCTCAGC ACCACGGAAC CGCAGCCCGC CGCCAGGGAC TGCTCCCACT
CCGGGACCTT CCTCAGCACA GGACTCTCCC TCCTCCCCCA TTTATGCCTC CATCTCCCAT
GCCAACCCCA GTTCCAGAAA GCCGCTGGAC ACCCACCTGG CCCTGGTTAA CCAGCACCCC
ATCGGCCCCT TCCCTCGAGT CCAGTCCCCA CCTCACCTGA AGAGCCCTCC TGCAGAGACC
CCAGGAGCTG GGGCCTGCCT TCCACCACCA TCACCCTCTG AACACCCTGA CGCCGTGGGT
GCAAACCAGC ACTTTGTTCT GGTGGAGGTG CACCGTCCGG ACAGTGAGCC TGATGTGAAT
GAAGTGCGGG CTCTGCCCCA GACTCGCACA GCCTCCACAC TCTCTCAGCT CTCAGACAGT
GGGCAGACCC TGAGCGAGGA CAGTGGCGTG GATGCCGGGG AGACGGAGGC CAGCACCTCA
GGCCGAGGCA GACAGACAGC ATCCGCTAAG AACAAGAATG GCAAGGAGCA GCCCCGGACG
GAGAGGACCG CGGAGGGTGC CAACAAACCT CCCGGCCTGC TGGAGCCAAC GTCCACCCTG
GTCCGTGTGA GGAAAAGTGC AGCCACACTG GGCATCGCCA TTGAGGGCGG TGCCAACACA
CGCCAGCCTC TGCCCAGGAT CGTCACAATT CAGCGAGGAG GTTCTGCCCA TAACTGTGGA
CAGCTCAAGG TGGGCCACGT AATTCTGGAA GTGAATGGGC AGACACTTCG GGGTAAGGAG
CACAAGGAGG CCGCCCGAAT CATCGCTGAG GCCTTCAAGA CCAAGGAGAG AGACTACATC
GACTTTCTGG TCACTGAGTT CAACGTGATG CTCTAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu17807
Clone ID Related Accession (Same CDS sequence) NM_001008793
Accession Version NM_001008793.2 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 2721bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Insert Structure linear
Update Date 15-FEB-2015
Organism Mus musculus (house mouse)
Product whirlin isoform 4
Comment REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK157955.1 and AY739117.1. On Feb 9, 2013 this sequence version replaced gi:57526157. Transcript Variant: This variant (4) lacks an in-frame exon and uses an alternate in-frame splice site in the coding region, compared to variant 2. The encoded isoform (4) is shorter than isoform 2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AY739117.1, AK122523.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGA ATACATTAGA CCTGGAAGGA ACCGGTGAGA CCACCCAGGG CAGCACCAAC
GCTCTCCCGG ATGTGTCTGT GGATGATGTC AAATCCCCCT CAGAAGATCT GCCTGGTATC
AAGCCACCTC CTCCCCCACC ACCCCTGGCT CAAGGTCATG ACCGCTTGCT TGGCCAGCCA
CGGAAGCCAG GGAGGGAGGA CCCCGCACCT CTGTCTTCTG CTGCCCACTC AGGCATTGTC
TTCTCAGCAC CACGGAACCG CAGCCCGCCG CCAGGGACTG CTCCCACTCC GGGACCTTCC
TCAGCACAGG ACTCTCCCTC CTCCCCCATT TATGCCTCCA TCTCCCATGC CAACCCCAGT
TCCAGAAAGC CGCTGGACAC CCACCTGGCC CTGGTTAACC AGCACCCCAT CGGCCCCTTC
CCTCGAGTCC AGTCCCCACC TCACCTGAAG AGCCCTCCTG CAGAGACCCC AGGAGCTGGG
GCCTGCCTTC CACCACCATC ACCCTCTGAA CACCCTGACG CCGTGGGTGC AAACCAGCAC
TTTGTTCTGG TGGAGGTGCA CCGTCCGGAC AGTGAGCCTG ATGTGAATGA AGTGCGGGCT
CTGCCCCAGA CTCGCACCTC CACACTCTCT CAGCTCTCAG ACAGTGGGCA GACCCTGAGC
GAGGACAGTG GCGTGGATGC CGGGGAGACG GAGGCCAGCA CCTCAGGCCG AGGCAGACAG
ACAGCATCCG CTAAGAACAA GAATGGCAAG GAGCAGCCCC GGACGGAGAG GACCGCGGAG
GGTGCCAACA AACCTCCCGG CCTGCTGGAG CCAACGTCCA CCCTGGTCCG TGTGAGGAAA
AGTGCAGCCA CACTGGGCAT CGCCATTGAG GGCGGTGCCA ACACACGCCA GCCTCTGCCC
AGGATCGTCA CAATTCAGCG AGGAGGTTCT GCCCATAACT GTGGACAGCT CAAGGTGGGC
CACGTAATTC TGGAAGTGAA TGGGCAGACA CTTCGGGGTA AGGAGCACAA GGAGGCCGCC
CGAATCATCG CTGAGGCCTT CAAGACCAAG GAGAGAGACT ACATCGACTT TCTGGTCACT
GAGTTCAACG TGATGCTCTA G

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001008793.1
CDS759..3479
Misc Feature(1)606..608(+)
Misc Feature(2)870..1097(+)
Misc Feature(3)876..959(+)
Misc Feature(4)1173..1406(+)
Misc Feature(5)1212..1388(+)
Misc Feature(6)1590..1832(+)
Misc Feature(7)1626..1802(+)
Misc Feature(8)2016..2258(+)
Misc Feature(9)2019..2111(+)
Misc Feature(10)3201..3416(+)
Misc Feature(11)3231..3410(+)
Exon (1)1..1379
Gene:Whrn
Gene Synonym:
Exon (2)1380..1598
Gene:Whrn
Gene Synonym:
Exon (3)1599..1724
Gene:Whrn
Gene Synonym:
Exon (4)1725..1927
Gene:Whrn
Gene Synonym:
Exon (5)1928..1964
Gene:Whrn
Gene Synonym:
Exon (6)1965..2177
Gene:Whrn
Gene Synonym:
Exon (7)2178..2387
Gene:Whrn
Gene Synonym:
Exon (8)2388..2459
Gene:Whrn
Gene Synonym:
Exon (9)2460..2994
Gene:Whrn
Gene Synonym:
Exon (10)2995..3173
Gene:Whrn
Gene Synonym:
Exon (11)3174..3296
Gene:Whrn
Gene Synonym:
Exon (12)3297..4053
Gene:Whrn
Gene Synonym:
Translation

Target ORF information:

RefSeq Version NM_001008793
Organism Mus musculus (house mouse)
Definition Mus musculus whirlin (Whrn), transcript variant 4, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
NM_001008793

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGGTTG GAGACCAGAT TCTGGAGGTG AATGGGCGGA GCTTTCTCAA CATCCTGCAT
GATGAGGCAG TGAAGCTGCT CAAGTCATCC CGGCACCTCA TCCTGACGGT GAAGGACGTC
GGAAGGCTGC CCCACGCACG TACCACCGTG GACCAGACCA AGTGGATCGC CAGTTCCCGG
ATCGGGGAAA GCGTCGCCAA CTCAGCAGGG TTTCCAGGGG ACCACACAGA AGAAGGGACA
AGCAAGCCAG GATTTTACAA GGGCCCAGCC GGCTCCCAGG TGACCCTGAG CAGCCTGGGG
AATCAGACTC GTGCACTGCT GGACGACCAA GCCAGGCACC TGCTGACAGA GCAGGAGCGC
GCCACCATGA TGTACTACCT GGCCCAGTAC CGTGGTGGCA CCATCTCTGT GGAGGCCATG
GTCATGGCAC TGTTTGAGTT GCTCAACACA CACGCCAAGT TCTCACTCCT GTCTGAGGTG
AGAAGCATCA TCTCACCCCA AGACCTGGAC CGCTTTGACC ACCTGGTGCT GAGGCGCGAG
ATCGAGTCTA TGAAGGCGAG GCAGCCCCCC GGCCCCGGGG TTGGAGACAC GTATTCCATG
GTTTCCTACA GCGACACAGG CTCATCCACA GGCAGCCACG GCACCTCTAC AACCGTCAGC
TCGGCCAGGA ATACATTAGA CCTGGAAGGA ACCGGTGAGA CCACCCAGGG CAGCACCAAC
GCTCTCCCGG ATGTGTCTGT GGATGATGTC AAATCCCCCT CAGAAGATCT GCCTGGTATC
AAGCCACCTC CTCCCCCACC ACCCCTGGCT CAAGGTCATG ACCGCTTGCT TGGCCAGCCA
CGGAAGCCAG GGAGGGAGGA CCCCGCACCT CTGTCTTCTG CTGCCCACTC AGGCATTGTC
TTCTCAGCAC CACGGAACCG CAGCCCGCCG CCAGGGACTG CTCCCACTCC GGGACCTTCC
TCAGCACAGG ACTCTCCCTC CTCCCCCATT TATGCCTCCA TCTCCCATGC CAACCCCAGT
TCCAGAAAGC CGCTGGACAC CCACCTGGCC CTGGTTAACC AGCACCCCAT CGGCCCCTTC
CCTCGAGTCC AGTCCCCACC TCACCTGAAG AGCCCTCCTG CAGAGACCCC AGGAGCTGGG
GCCTGCCTTC CACCACCATC ACCCTCTGAA CACCCTGACG CCGTGGGTGC AAACCAGCAC
TTTGTTCTGG TGGAGGTGCA CCGTCCGGAC AGTGAGCCTG ATGTGAATGA AGTGCGGGCT
CTGCCCCAGA CTCGCACCTC CACACTCTCT CAGCTCTCAG ACAGTGGGCA GACCCTGAGC
GAGGACAGTG GCGTGGATGC CGGGGAGACG GAGGCCAGCA CCTCAGGCCG AGGCAGACAG
ACAGCATCCG CTAAGAACAA GAATGGCAAG GAGCAGCCCC GGACGGAGAG GACCGCGGAG
GGTGCCAACA AACCTCCCGG CCTGCTGGAG CCAACGTCCA CCCTGGTCCG TGTGAGGAAA
AGTGCAGCCA CACTGGGCAT CGCCATTGAG GGCGGTGCCA ACACACGCCA GCCTCTGCCC
AGGATCGTCA CAATTCAGCG AGGAGGTTCT GCCCATAACT GTGGACAGCT CAAGGTGGGC
CACGTAATTC TGGAAGTGAA TGGGCAGACA CTTCGGGGTA AGGAGCACAA GGAGGCCGCC
CGAATCATCG CTGAGGCCTT CAAGACCAAG GAGAGAGACT ACATCGACTT TCTGGTCACT
GAGTTCAACG TGATGCTCTA G

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu17779
Clone ID Related Accession (Same CDS sequence) NM_001276371
Accession Version NM_001276371.1 Documents for ORF clone product in dufault vector
Sequence Information ORF Nucleotide Sequence (Length: 969bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ® Seamless cloning technology
Insert Structure linear
Update Date 15-FEB-2015
Organism Mus musculus (house mouse)
Product whirlin isoform 10
Comment REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AK157955.1 and HQ148553.1. Transcript Variant: This variant (10) uses an alternate 3' terminal exon, compared to variant 2. It encodes isoform 10 which is shorter and has a distinct C-terminus, compared to isoform 2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: HQ148553.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849377, SAMN00849379 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001263300.1
CDS759..1727
Misc Feature(1)606..608(+)
Misc Feature(2)870..1097(+)
Misc Feature(3)876..959(+)
Misc Feature(4)1173..1406(+)
Misc Feature(5)1212..1388(+)
Misc Feature(6)1590..>1724(+)
Misc Feature(7)1626..1643(+)
Exon (1)1..1379
Gene:Whrn
Gene Synonym:
Exon (2)1380..1598
Gene:Whrn
Gene Synonym:
Exon (3)1599..1724
Gene:Whrn
Gene Synonym:
Exon (4)1725..2029
Gene:Whrn
Gene Synonym:
Translation

Target ORF information:

RefSeq Version NM_001276371
Organism Mus musculus (house mouse)
Definition Mus musculus whirlin (Whrn), transcript variant 10, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
NM_001276371

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGAACGCAC AGCTGGACGG CCTGTCGGTG AGCTCGTCCT CCACCGGCTC GCTGGGCTCG 
GCGGCGGCGG CGGCGGGCGG CGGCGGGGGC GCGGGGTTGC GGCTGCTGTC TGCCAACGTG
CGCCAGCTGC ACCAAGCGCT CACGGCGCTG CTGAGCGAGC CCGAGCGGGA GCAGTTCACT
CACTGCCTCA ACGCGTACCA CGCGCGCCGC AACGTCTTCG ACCTGGTGCG CACCCTGCGC
GTCCTGCTGG ACAGCCCGGT CAAGCGGCGT CTGCTGCCCA TGCTGCGTCT GGTCATCCCG
CGCTCCGACC AGCTGCTCTT CGACCAGTAC ACGGCCGAGG GCCTCTACCT GCCAGCCACC
ACCCCCTACA GGCAGCCCGC CTGGGCCGCT CCCGACGGCG CGGGGCCCGG GGAGGTGCGA
CTCGTGAGCC TGCGGCGCGC CAAGGCCCAC GAGGGCTTGG GCTTCAGCAT CCGCGGGGGC
TCGGAACACG GCGTGGGCAT CTACGTGTCT CTAGTGGAGC CGGGCTCCCT GGCAGAGAAG
GAAGGGTTGC GGGTCGGGGA CCAGATTCTG CGCGTCAACG ATAAATCTCT AGCCCGGGTG
ACCCACGCGG AGGCTGTCAA GGCTCTCAAA GGCTCCAAGA AGCTGGTGCT GTCTGTATAC
TCAGCTGGGC GTATCCCAGG GGGCTATGTG ACCAACCACA TCTACACCTG GGTGGACCCA
CAGGGTCGAA GCACATCCCC TCCCTCCAGC CTGCCCCAGC CCCATGGCAG CACCCTGAGA
CAGCGTGAAG ATGACCGAAG GAGTACCCTC CACCTCCTGC AGAGTGGAGA TGAGAAAAAG
GTGAACCTGG TGTTGGGGGA CGGCCGGTCC TTGGGCCTCA CGATCCGAGG TGGAGCAGAG
TACGGCCTTG GCATTTACAT CACTGGTGTG GACCCAGGCT CTGAAGCAGA GAGCAGCGGC
CTCAAGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

 
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