Gene Symbol | Aff4 |
Entrez Gene ID | 93736 |
Full Name | AF4/FMR2 family, member 4 |
Synonyms | AF5Q31,Alf4,Laf4l,MCEF |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Aff4 cDNA ORF clone
Gene Symbol | Aff4 |
Entrez Gene ID | 93736 |
Full Name | AF4/FMR2 family, member 4 |
Synonyms | AF5Q31,Alf4,Laf4l,MCEF |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001363331.1 | NP_001350260.1 | AF4/FMR2 family member 4 isoform 2 |
XM_006534560.3 | XP_006534623.1 | AF4/FMR2 family member 4 isoform X2 |
XM_011249331.3 | XP_011247633.1 | AF4/FMR2 family member 4 isoform X1 |
NM_033565.2 | NP_291043.1 | AF4/FMR2 family member 4 isoform 1 |
XM_011249331.2 | XP_011247633.1 | AF4/FMR2 family member 4 isoform X1 |
XM_030246443.1 | XP_030102303.1 | AF4/FMR2 family member 4 isoform X2 |
Pan troglodytes (chimpanzee) | AFF4 | XP_517928.2 |
Canis lupus familiaris (dog) | AFF4 | XP_850309.1 |
Mus musculus (house mouse) | Aff4 | NP_291043.1 |
Gallus gallus (chicken) | AFF4 | XP_004945088.1 |
Danio rerio (zebrafish) | aff4 | XP_684327.6 |
Rattus norvegicus (Norway rat) | Aff4 | NP_001100471.1 |
Xenopus tropicalis (tropical clawed frog) | aff4 | XP_002935317.2 |
Homo sapiens (human) | AFF4 | NP_055238.1 |
Bos taurus (cattle) | AFF4 | NP_001178058.1 |
Importance of a specific amino acid pairing for murine MLL leukemias driven by MLLT1/3 or AFF1/4.
Lokken AA, Achille NJ, Chang MJ, Lin JJ, Kuntimaddi A, Leach BI, Malik B, Nesbit JB, Zhang S, Bushweller JH, Zeleznik-Le NJ, Hemenway CS
Leukemia research38(11)1309-15(2014 Nov)
The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation.
Lin C, Garruss AS, Luo Z, Guo F, Shilatifard A
Cell152(1-2)144-56(2013 Jan)
Regulation of AMP-activated protein kinase signaling by AFF4 protein, member of AF4 (ALL1-fused gene from chromosome 4) family of transcription factors, in hypothalamic neurons.
Komori T, Doi A, Nosaka T, Furuta H, Akamizu T, Kitamura T, Senba E, Morikawa Y
The Journal of biological chemistry287(24)19985-96(2012 Jun)
The little elongation complex regulates small nuclear RNA transcription.
Smith ER, Lin C, Garrett AS, Thornton J, Mohaghegh N, Hu D, Jackson J, Saraf A, Swanson SK, Seidel C, Florens L, Washburn MP, Eissenberg JC, Shilatifard A
Molecular cell44(6)954-65(2011 Dec)
Differential chromatin looping regulates CD4 expression in immature thymocytes.
Jiang H, Peterlin BM
Molecular and cellular biology28(3)907-12(2008 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
define a specific pairing of two amino acids that creates a salt bridge between MLLT1/3 and AFF proteins that is critically important for MLL-mediated transformation of HPCs
Title: Importance of a specific amino acid pairing for murine MLL leukemias driven by MLLT1/3 or AFF1/4.
AFF4 may therefore help to maintain activation of AMPK downstream signaling under conditions of prolonged stimulation with ghrelin, such as during fasting.
Title: Regulation of AMP-activated protein kinase signaling by AFF4 protein, member of AF4 (ALL1-fused gene from chromosome 4) family of transcription factors, in hypothalamic neurons.
In the absence of Runx1 on the silencer, P-TEFb interacts with the transcription complex, forming a different chromatin loop between the enhancer and the promoter, which leads to the expression of the CD4 gene
Title: Differential chromatin looping regulates CD4 expression in immature thymocytes.
Af4 functions as a positive regulator of Pol II transcription elongation factor b (P-TEFb) kinase and, in complex with MLL fusion partners Af9, Enl and Af10, as a mediator of histone H3-K79 methylation by recruiting Dot1 to elongating Pol II
Title: The mixed-lineage leukemia fusion partner AF4 stimulates RNA polymerase II transcriptional elongation and mediates coordinated chromatin remodeling.
AF5q31 (Aff4) is a transcriptional regulator in testicular somatic cells and is essential for male germ cell differentiation and survival.
Title: Infertility with defective spermiogenesis in mice lacking AF5q31, the target of chromosomal translocation in human infant leukemia.
The following Aff4 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Aff4 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu15411 | |
Clone ID Related Accession (Same CDS sequence) | XM_011249331.3 , NM_033565.2 , XM_011249331.2 | |
Accession Version | XM_011249331.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3483bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | AF4/FMR2 family member 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011249331.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011247633.1 |
CDS | 526..4008 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011249331.3 |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu47156 | |
Clone ID Related Accession (Same CDS sequence) | NM_001363331.1 , XM_006534560.3 , XM_030246443.1 | |
Accession Version | XM_030246443.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3396bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | AF4/FMR2 family member 4 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030102303.1 |
CDS | 587..3982 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030246443.1 |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu15411 | |
Clone ID Related Accession (Same CDS sequence) | XM_011249331.3 , NM_033565.2 , XM_011249331.2 | |
Accession Version | NM_033565.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3483bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Mus musculus(house mouse) | |
Product | AF4/FMR2 family member 4 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CJ064959.1, BC138999.1 and AI536326.1. On Jul 18, 2009 this sequence version replaced NM_033565.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF190449.1, BC138999.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_291043.1 |
CDS | 368..3850 |
Translation |
Target ORF information:
Target ORF information:
|
NM_033565.2 |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu47156 | |
Clone ID Related Accession (Same CDS sequence) | NM_001363331.1 , XM_006534560.3 , XM_030246443.1 | |
Accession Version | NM_001363331.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3396bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-11-16 | |
Organism | Mus musculus(house mouse) | |
Product | AF4/FMR2 family member 4 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL592489.13. On May 17, 2018 this sequence version replaced XM_006534560.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC145490.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001350260.1 |
CDS | 368..3763 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001363331.1 |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu15411 | |
Clone ID Related Accession (Same CDS sequence) | XM_011249331.3 , NM_033565.2 , XM_011249331.2 | |
Accession Version | XM_011249331.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3483bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | AF4/FMR2 family member 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011249331.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011247633.1 |
CDS | 745..4227 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011249331.2 |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu47156 | |
Clone ID Related Accession (Same CDS sequence) | NM_001363331.1 , XM_006534560.3 , XM_030246443.1 | |
Accession Version | XM_006534560.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3396bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | AF4/FMR2 family member 4 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006534560.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006534623.1 |
CDS | 653..4048 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006534560.3 |
1 | ATGAACCGTG AAGACCGGAA TGTGCTGCGC ATGAAAGAAA GGGAAAGGCG GAATCAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Importance of a specific amino acid pairing for murine MLL leukemias driven by MLLT1/3 or AFF1/4. |
The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation. |
Regulation of AMP-activated protein kinase signaling by AFF4 protein, member of AF4 (ALL1-fused gene from chromosome 4) family of transcription factors, in hypothalamic neurons. |
The little elongation complex regulates small nuclear RNA transcription. |
Differential chromatin looping regulates CD4 expression in immature thymocytes. |