Gene Symbol |
taf6 |
Entrez Gene ID |
447818 |
Full Name |
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor |
Synonyms |
wu:fb83e08,wu:fj30b02,zgc:92160 |
General protein information |
- Preferred Names
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Names
transcription initiation factor TFIID subunit 6
|
Gene Type |
protein-coding |
Organism |
Danio rerio(zebrafish) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_021476094.1 |
XP_021331769.1 |
transcription initiation factor TFIID subunit 6 isoform X1 |
XM_009301821.2 |
XP_009300096.1 |
transcription initiation factor TFIID subunit 6 isoform X1 |
NM_001004557.1 |
NP_001004557.1 |
transcription initiation factor TFIID subunit 6 |
Canis lupus familiaris (dog) |
TAF6 |
XP_546964.2 |
Rattus norvegicus (Norway rat) |
Taf6 |
NP_001037690.1 |
Danio rerio (zebrafish) |
taf6 |
NP_001004557.1 |
Drosophila melanogaster (fruit fly) |
Taf6 |
NP_001262056.1 |
Caenorhabditis elegans (roundworm) |
taf-6.1 |
NP_493919.1 |
Kluyveromyces lactis |
KLLA0F10659g |
XP_455565.1 |
Homo sapiens (human) |
TAF6 |
NP_001177344.1 |
Saccharomyces cerevisiae (baker's yeast) |
TAF6 |
NP_011403.1 |
Schizosaccharomyces pombe (fission yeast) |
taf6 |
NP_587928.1 |
Xenopus tropicalis (tropical clawed frog) |
taf6 |
XP_004919136.1 |
Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP004254 |
XP_313173.5 |
Magnaporthe oryzae (rice blast fungus) |
MGG_04877 |
XP_003712358.1 |
Mus musculus (house mouse) |
Taf6 |
NP_033341.1 |
Pan troglodytes (chimpanzee) |
TAF6 |
XP_003318659.1 |
Bos taurus (cattle) |
TAF6 |
NP_001015525.1 |
Eremothecium gossypii |
AGOS_AFL020W |
NP_985528.1 |
Neurospora crassa |
NCU07757 |
XP_958550.1 |
Related articles in PubMed
Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle.
Pijnappel WP, Kolkman A, Baltissen MP, Heck AJ, Timmers HM
Proteome science746(2009 Dec)
The zebrafish gene map defines ancestral vertebrate chromosomes.
Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH, Talbot WS
Genome research15(9)1307-14(2005 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following taf6 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the taf6 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861
| ATGGCAGAGG AACGCAGACA GAAGCTGTGT TCTGTGATCC TGCCCACTGA TTCCATGAAG GCAATGGCTG AGTCGGTGGG TATAGGCTCA CTGCAGGAAG ACAGCTGTCT GACCCTCAGT GAAGAAGTTA GCTACAGGAT CAAAGAGATT GCACAGGATG CATTGAAGTT TATGCACCAT GGGAAAAGAT GCAAACTTAC AACTGGTGAC ATTGATCATG CCCTTAAACT GAAAAATGTG GAGCCACTGT ATGGATTCCA GTCCGAGGAG TTCATCCCAT TTCGCTTTGC AAGTGGAGGT GGCAGAGAAT TGCACTTTTA TGAAGAAAAA GAAGTGGATC TTAGTGACAT CATTAATACA CCCTTGCCTC GTGTACCTTT AGACGTTTCA CTAAAAGCTC ACTGGCTAAG TATAGATGGT GTCCAGCCTG CAATTCCAGA GAACCCACCT TCTGCTTCTA AAGAGCAGCA GAAGGCAGAG TCTACTGAGC CGCTTAAAGC TGTCAAACCT GGACAGGAAG ACGAAGGCTT TATTCAAGCC AAGGGTCAGA GTGCAGTTTC TGCTGAAGTC AAAGGAAAGG AAAAGATGCG GATGAAACCA CGTAGCACAC ATGAGCTCTC TGTGGAGCAG CAGTTGTACT ATAAAGAAAT TACTGAAGCC TGTGTGGGAT CCTGTGAAGC CAAAAGAGCG GAGGCACTGC AGAGCATAGC CACCGACCCA GGGCTGTACC AAATGCTGCC AAGGTTCAGT ACCTTCATCT CGGAGGGTGT GCGTGTAAAT GTTGTTCAGA ATAACTTGGC TTTGCTGATA TATTTGATGA GGATGGTGAA GGCTCTAATG GACAATCCAA CTCTATATTT GGAGAAATAT CTCCATGAGT TGATCCCCGC GGTGGTGACA TGTATTGTGA GTAAGCAACT GTGTTTGAGG CCTGATGTAG ACAATCACTG GGCTCTGCGA GACTTTGCTG CCCGGTTAAT GGCTCAGAGC TGCAAAACAT TCAGCACCAC AACCAACAAC ATCCAGTCGC GTATCACCAA AACCTTTACT AAGGCATTGT TGGATGAAAA GACTCAGTGG ACAACTCGTT ATGGCTGCAT TGCTGGACTT GCTGAACTTG GGCATGATGT GATAAAGACT TTGATCATCC CCCGACTGTT TGTAGAGGGT GCCCGTATTA AAGCAGTGAT GGATGGGCCA GTGGTATCCA ATATTGATAA GATTGGAGCT GATCATGTCC AGAGTCTATT ACTGAAACAT TGTGCAAGTG TGGTTGCTAA AACTAGGCCG GTCCCAGATC TGGTGGAGCA ATACAAAGCA GATTATGGTT ATCTGGGCAC TATGCTATGT TCACATGTGG TGAAGGCCCG TGCACAGGCT GCCTTTCAGG CCCAAACTGT TAACAGAACC ACACTTACTA TCACACAGCC ACGTCCGACT TTGACAATGT CTCAGAGTGG ATTGTCAACA TCAGGTGTTT CACGTACACC CAGCATAATT AAAGTACCCA GTTCACTTAC CCTCATGTCT ACTCGACCTG GAACACCCAC TCAGCCATCA CCCCCAGCAA CAAAGTATAT TGTTATGGCA ACAAGTGCAG GGGCTGCATC CACACAGCAG GTAATCACTC TCAGCTCCTC TCAGTCTGGA TCCCCTGTCA CAAGTACAGT CCCCAGCACA CCAACAAGTC TACAGCCACT CGTCAAACTG GAGTCTGGAA ATCCAGGTGC TGTGGGCAGC TCACGCCCAA TCCAGAAATA TATTGTGGTG TCTTTGCCTT CATCCTCTTC ATCAATGGAT AATAAGGGCT CAGGTGTCCT TTCCTCTTCT ACCTCACCTA TCAGCATGGA GTCTGCAGTC AAGCTGGAAT GTTCAGAATC ACCAGCCACA AGCACACAAT TGCCACATTG A |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001004557.1 |
CDS | 183..2093 |
Translation | |
Target ORF information:
RefSeq Version | NM_001004557.1 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (taf6), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001004557.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861
| ATGGCAGAGG AACGCAGACA GAAGCTGTGT TCTGTGATCC TGCCCACTGA TTCCATGAAG GCAATGGCTG AGTCGGTGGG TATAGGCTCA CTGCAGGAAG ACAGCTGTCT GACCCTCAGT GAAGAAGTTA GCTACAGGAT CAAAGAGATT GCACAGGATG CATTGAAGTT TATGCACCAT GGGAAAAGAT GCAAACTTAC AACTGGTGAC ATTGATCATG CCCTTAAACT GAAAAATGTG GAGCCACTGT ATGGATTCCA GTCCGAGGAG TTCATCCCAT TTCGCTTTGC AAGTGGAGGT GGCAGAGAAT TGCACTTTTA TGAAGAAAAA GAAGTGGATC TTAGTGACAT CATTAATACA CCCTTGCCTC GTGTACCTTT AGACGTTTCA CTAAAAGCTC ACTGGCTAAG TATAGATGGT GTCCAGCCTG CAATTCCAGA GAACCCACCT TCTGCTTCTA AAGAGCAGCA GAAGGCAGAG TCTACTGAGC CGCTTAAAGC TGTCAAACCT GGACAGGAAG ACGAAGGCTT TATTCAAGCC AAGGGTCAGA GTGCAGTTTC TGCTGAAGTC AAAGGAAAGG AAAAGATGCG GATGAAACCA CGTAGCACAC ATGAGCTCTC TGTGGAGCAG CAGTTGTACT ATAAAGAAAT TACTGAAGCC TGTGTGGGAT CCTGTGAAGC CAAAAGAGCG GAGGCACTGC AGAGCATAGC CACCGACCCA GGGCTGTACC AAATGCTGCC AAGGTTCAGT ACCTTCATCT CGGAGGGTGT GCGTGTAAAT GTTGTTCAGA ATAACTTGGC TTTGCTGATA TATTTGATGA GGATGGTGAA GGCTCTAATG GACAATCCAA CTCTATATTT GGAGAAATAT CTCCATGAGT TGATCCCCGC GGTGGTGACA TGTATTGTGA GTAAGCAACT GTGTTTGAGG CCTGATGTAG ACAATCACTG GGCTCTGCGA GACTTTGCTG CCCGGTTAAT GGCTCAGAGC TGCAAAACAT TCAGCACCAC AACCAACAAC ATCCAGTCGC GTATCACCAA AACCTTTACT AAGGCATTGT TGGATGAAAA GACTCAGTGG ACAACTCGTT ATGGCTGCAT TGCTGGACTT GCTGAACTTG GGCATGATGT GATAAAGACT TTGATCATCC CCCGACTGTT TGTAGAGGGT GCCCGTATTA AAGCAGTGAT GGATGGGCCA GTGGTATCCA ATATTGATAA GATTGGAGCT GATCATGTCC AGAGTCTATT ACTGAAACAT TGTGCAAGTG TGGTTGCTAA AACTAGGCCG GTCCCAGATC TGGTGGAGCA ATACAAAGCA GATTATGGTT ATCTGGGCAC TATGCTATGT TCACATGTGG TGAAGGCCCG TGCACAGGCT GCCTTTCAGG CCCAAACTGT TAACAGAACC ACACTTACTA TCACACAGCC ACGTCCGACT TTGACAATGT CTCAGAGTGG ATTGTCAACA TCAGGTGTTT CACGTACACC CAGCATAATT AAAGTACCCA GTTCACTTAC CCTCATGTCT ACTCGACCTG GAACACCCAC TCAGCCATCA CCCCCAGCAA CAAAGTATAT TGTTATGGCA ACAAGTGCAG GGGCTGCATC CACACAGCAG GTAATCACTC TCAGCTCCTC TCAGTCTGGA TCCCCTGTCA CAAGTACAGT CCCCAGCACA CCAACAAGTC TACAGCCACT CGTCAAACTG GAGTCTGGAA ATCCAGGTGC TGTGGGCAGC TCACGCCCAA TCCAGAAATA TATTGTGGTG TCTTTGCCTT CATCCTCTTC ATCAATGGAT AATAAGGGCT CAGGTGTCCT TTCCTCTTCT ACCTCACCTA TCAGCATGGA GTCTGCAGTC AAGCTGGAAT GTTCAGAATC ACCAGCCACA AGCACACAAT TGCCACATTG A |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa34641 |
Clone ID Related Accession (Same CDS sequence) |
XM_021476094.1
, XM_009301821.2
, NM_001004557.1
|
Accession Version |
XM_021476094.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 1911bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2017-06-14 |
Organism |
Danio rerio(zebrafish) |
Product |
transcription initiation factor TFIID subunit 6 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861
| ATGGCAGAGG AACGCAGACA GAAGCTGTGT TCTGTGATCC TGCCCACTGA TTCCATGAAG GCAATGGCTG AGTCGGTGGG TATAGGCTCA CTGCAGGAAG ACAGCTGTCT GACCCTCAGT GAAGAAGTTA GCTACAGGAT CAAAGAGATT GCACAGGATG CATTGAAGTT TATGCACCAT GGGAAAAGAT GCAAACTTAC AACTGGTGAC ATTGATCATG CCCTTAAACT GAAAAATGTG GAGCCACTGT ATGGATTCCA GTCCGAGGAG TTCATCCCAT TTCGCTTTGC AAGTGGAGGT GGCAGAGAAT TGCACTTTTA TGAAGAAAAA GAAGTGGATC TTAGTGACAT CATTAATACA CCCTTGCCTC GTGTACCTTT AGACGTTTCA CTAAAAGCTC ACTGGCTAAG TATAGATGGT GTCCAGCCTG CAATTCCAGA GAACCCACCT TCTGCTTCTA AAGAGCAGCA GAAGGCAGAG TCTACTGAGC CGCTTAAAGC TGTCAAACCT GGACAGGAAG ACGAAGGCTT TATTCAAGCC AAGGGTCAGA GTGCAGTTTC TGCTGAAGTC AAAGGAAAGG AAAAGATGCG GATGAAACCA CGTAGCACAC ATGAGCTCTC TGTGGAGCAG CAGTTGTACT ATAAAGAAAT TACTGAAGCC TGTGTGGGAT CCTGTGAAGC CAAAAGAGCG GAGGCACTGC AGAGCATAGC CACCGACCCA GGGCTGTACC AAATGCTGCC AAGGTTCAGT ACCTTCATCT CGGAGGGTGT GCGTGTAAAT GTTGTTCAGA ATAACTTGGC TTTGCTGATA TATTTGATGA GGATGGTGAA GGCTCTAATG GACAATCCAA CTCTATATTT GGAGAAATAT CTCCATGAGT TGATCCCCGC GGTGGTGACA TGTATTGTGA GTAAGCAACT GTGTTTGAGG CCTGATGTAG ACAATCACTG GGCTCTGCGA GACTTTGCTG CCCGGTTAAT GGCTCAGAGC TGCAAAACAT TCAGCACCAC AACCAACAAC ATCCAGTCGC GTATCACCAA AACCTTTACT AAGGCATTGT TGGATGAAAA GACTCAGTGG ACAACTCGTT ATGGCTGCAT TGCTGGACTT GCTGAACTTG GGCATGATGT GATAAAGACT TTGATCATCC CCCGACTGTT TGTAGAGGGT GCCCGTATTA AAGCAGTGAT GGATGGGCCA GTGGTATCCA ATATTGATAA GATTGGAGCT GATCATGTCC AGAGTCTATT ACTGAAACAT TGTGCAAGTG TGGTTGCTAA AACTAGGCCG GTCCCAGATC TGGTGGAGCA ATACAAAGCA GATTATGGTT ATCTGGGCAC TATGCTATGT TCACATGTGG TGAAGGCCCG TGCACAGGCT GCCTTTCAGG CCCAAACTGT TAACAGAACC ACACTTACTA TCACACAGCC ACGTCCGACT TTGACAATGT CTCAGAGTGG ATTGTCAACA TCAGGTGTTT CACGTACACC CAGCATAATT AAAGTACCCA GTTCACTTAC CCTCATGTCT ACTCGACCTG GAACACCCAC TCAGCCATCA CCCCCAGCAA CAAAGTATAT TGTTATGGCA ACAAGTGCAG GGGCTGCATC CACACAGCAG GTAATCACTC TCAGCTCCTC TCAGTCTGGA TCCCCTGTCA CAAGTACAGT CCCCAGCACA CCAACAAGTC TACAGCCACT CGTCAAACTG GAGTCTGGAA ATCCAGGTGC TGTGGGCAGC TCACGCCCAA TCCAGAAATA TATTGTGGTG TCTTTGCCTT CATCCTCTTC ATCAATGGAT AATAAGGGCT CAGGTGTCCT TTCCTCTTCT ACCTCACCTA TCAGCATGGA GTCTGCAGTC AAGCTGGAAT GTTCAGAATC ACCAGCCACA AGCACACAAT TGCCACATTG A |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_021331769.1 |
CDS | 315..2225 |
Translation | |
Target ORF information:
RefSeq Version | XM_021476094.1 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (taf6), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_021476094.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861
| ATGGCAGAGG AACGCAGACA GAAGCTGTGT TCTGTGATCC TGCCCACTGA TTCCATGAAG GCAATGGCTG AGTCGGTGGG TATAGGCTCA CTGCAGGAAG ACAGCTGTCT GACCCTCAGT GAAGAAGTTA GCTACAGGAT CAAAGAGATT GCACAGGATG CATTGAAGTT TATGCACCAT GGGAAAAGAT GCAAACTTAC AACTGGTGAC ATTGATCATG CCCTTAAACT GAAAAATGTG GAGCCACTGT ATGGATTCCA GTCCGAGGAG TTCATCCCAT TTCGCTTTGC AAGTGGAGGT GGCAGAGAAT TGCACTTTTA TGAAGAAAAA GAAGTGGATC TTAGTGACAT CATTAATACA CCCTTGCCTC GTGTACCTTT AGACGTTTCA CTAAAAGCTC ACTGGCTAAG TATAGATGGT GTCCAGCCTG CAATTCCAGA GAACCCACCT TCTGCTTCTA AAGAGCAGCA GAAGGCAGAG TCTACTGAGC CGCTTAAAGC TGTCAAACCT GGACAGGAAG ACGAAGGCTT TATTCAAGCC AAGGGTCAGA GTGCAGTTTC TGCTGAAGTC AAAGGAAAGG AAAAGATGCG GATGAAACCA CGTAGCACAC ATGAGCTCTC TGTGGAGCAG CAGTTGTACT ATAAAGAAAT TACTGAAGCC TGTGTGGGAT CCTGTGAAGC CAAAAGAGCG GAGGCACTGC AGAGCATAGC CACCGACCCA GGGCTGTACC AAATGCTGCC AAGGTTCAGT ACCTTCATCT CGGAGGGTGT GCGTGTAAAT GTTGTTCAGA ATAACTTGGC TTTGCTGATA TATTTGATGA GGATGGTGAA GGCTCTAATG GACAATCCAA CTCTATATTT GGAGAAATAT CTCCATGAGT TGATCCCCGC GGTGGTGACA TGTATTGTGA GTAAGCAACT GTGTTTGAGG CCTGATGTAG ACAATCACTG GGCTCTGCGA GACTTTGCTG CCCGGTTAAT GGCTCAGAGC TGCAAAACAT TCAGCACCAC AACCAACAAC ATCCAGTCGC GTATCACCAA AACCTTTACT AAGGCATTGT TGGATGAAAA GACTCAGTGG ACAACTCGTT ATGGCTGCAT TGCTGGACTT GCTGAACTTG GGCATGATGT GATAAAGACT TTGATCATCC CCCGACTGTT TGTAGAGGGT GCCCGTATTA AAGCAGTGAT GGATGGGCCA GTGGTATCCA ATATTGATAA GATTGGAGCT GATCATGTCC AGAGTCTATT ACTGAAACAT TGTGCAAGTG TGGTTGCTAA AACTAGGCCG GTCCCAGATC TGGTGGAGCA ATACAAAGCA GATTATGGTT ATCTGGGCAC TATGCTATGT TCACATGTGG TGAAGGCCCG TGCACAGGCT GCCTTTCAGG CCCAAACTGT TAACAGAACC ACACTTACTA TCACACAGCC ACGTCCGACT TTGACAATGT CTCAGAGTGG ATTGTCAACA TCAGGTGTTT CACGTACACC CAGCATAATT AAAGTACCCA GTTCACTTAC CCTCATGTCT ACTCGACCTG GAACACCCAC TCAGCCATCA CCCCCAGCAA CAAAGTATAT TGTTATGGCA ACAAGTGCAG GGGCTGCATC CACACAGCAG GTAATCACTC TCAGCTCCTC TCAGTCTGGA TCCCCTGTCA CAAGTACAGT CCCCAGCACA CCAACAAGTC TACAGCCACT CGTCAAACTG GAGTCTGGAA ATCCAGGTGC TGTGGGCAGC TCACGCCCAA TCCAGAAATA TATTGTGGTG TCTTTGCCTT CATCCTCTTC ATCAATGGAT AATAAGGGCT CAGGTGTCCT TTCCTCTTCT ACCTCACCTA TCAGCATGGA GTCTGCAGTC AAGCTGGAAT GTTCAGAATC ACCAGCCACA AGCACACAAT TGCCACATTG A |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa34641 |
Clone ID Related Accession (Same CDS sequence) |
XM_021476094.1
, XM_009301821.2
, NM_001004557.1
|
Accession Version |
XM_009301821.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 1911bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-06-23 |
Organism |
Danio rerio(Zebrafish) |
Product |
transcription initiation factor TFIID subunit 6 isoform X1 |
Comment |
MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 24, 2016 this sequence version replaced XM_009301821.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861
| ATGGCAGAGG AACGCAGACA GAAGCTGTGT TCTGTGATCC TGCCCACTGA TTCCATGAAG GCAATGGCTG AGTCGGTGGG TATAGGCTCA CTGCAGGAAG ACAGCTGTCT GACCCTCAGT GAAGAAGTTA GCTACAGGAT CAAAGAGATT GCACAGGATG CATTGAAGTT TATGCACCAT GGGAAAAGAT GCAAACTTAC AACTGGTGAC ATTGATCATG CCCTTAAACT GAAAAATGTG GAGCCACTGT ATGGATTCCA GTCCGAGGAG TTCATCCCAT TTCGCTTTGC AAGTGGAGGT GGCAGAGAAT TGCACTTTTA TGAAGAAAAA GAAGTGGATC TTAGTGACAT CATTAATACA CCCTTGCCTC GTGTACCTTT AGACGTTTCA CTAAAAGCTC ACTGGCTAAG TATAGATGGT GTCCAGCCTG CAATTCCAGA GAACCCACCT TCTGCTTCTA AAGAGCAGCA GAAGGCAGAG TCTACTGAGC CGCTTAAAGC TGTCAAACCT GGACAGGAAG ACGAAGGCTT TATTCAAGCC AAGGGTCAGA GTGCAGTTTC TGCTGAAGTC AAAGGAAAGG AAAAGATGCG GATGAAACCA CGTAGCACAC ATGAGCTCTC TGTGGAGCAG CAGTTGTACT ATAAAGAAAT TACTGAAGCC TGTGTGGGAT CCTGTGAAGC CAAAAGAGCG GAGGCACTGC AGAGCATAGC CACCGACCCA GGGCTGTACC AAATGCTGCC AAGGTTCAGT ACCTTCATCT CGGAGGGTGT GCGTGTAAAT GTTGTTCAGA ATAACTTGGC TTTGCTGATA TATTTGATGA GGATGGTGAA GGCTCTAATG GACAATCCAA CTCTATATTT GGAGAAATAT CTCCATGAGT TGATCCCCGC GGTGGTGACA TGTATTGTGA GTAAGCAACT GTGTTTGAGG CCTGATGTAG ACAATCACTG GGCTCTGCGA GACTTTGCTG CCCGGTTAAT GGCTCAGAGC TGCAAAACAT TCAGCACCAC AACCAACAAC ATCCAGTCGC GTATCACCAA AACCTTTACT AAGGCATTGT TGGATGAAAA GACTCAGTGG ACAACTCGTT ATGGCTGCAT TGCTGGACTT GCTGAACTTG GGCATGATGT GATAAAGACT TTGATCATCC CCCGACTGTT TGTAGAGGGT GCCCGTATTA AAGCAGTGAT GGATGGGCCA GTGGTATCCA ATATTGATAA GATTGGAGCT GATCATGTCC AGAGTCTATT ACTGAAACAT TGTGCAAGTG TGGTTGCTAA AACTAGGCCG GTCCCAGATC TGGTGGAGCA ATACAAAGCA GATTATGGTT ATCTGGGCAC TATGCTATGT TCACATGTGG TGAAGGCCCG TGCACAGGCT GCCTTTCAGG CCCAAACTGT TAACAGAACC ACACTTACTA TCACACAGCC ACGTCCGACT TTGACAATGT CTCAGAGTGG ATTGTCAACA TCAGGTGTTT CACGTACACC CAGCATAATT AAAGTACCCA GTTCACTTAC CCTCATGTCT ACTCGACCTG GAACACCCAC TCAGCCATCA CCCCCAGCAA CAAAGTATAT TGTTATGGCA ACAAGTGCAG GGGCTGCATC CACACAGCAG GTAATCACTC TCAGCTCCTC TCAGTCTGGA TCCCCTGTCA CAAGTACAGT CCCCAGCACA CCAACAAGTC TACAGCCACT CGTCAAACTG GAGTCTGGAA ATCCAGGTGC TGTGGGCAGC TCACGCCCAA TCCAGAAATA TATTGTGGTG TCTTTGCCTT CATCCTCTTC ATCAATGGAT AATAAGGGCT CAGGTGTCCT TTCCTCTTCT ACCTCACCTA TCAGCATGGA GTCTGCAGTC AAGCTGGAAT GTTCAGAATC ACCAGCCACA AGCACACAAT TGCCACATTG A |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_009300096.1 |
CDS | 24..1934 |
Translation | |
Target ORF information:
RefSeq Version | XM_009301821.2 |
Organism | Danio rerio(Zebrafish) |
Definition | Danio rerio TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor (taf6), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_009301821.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861
| ATGGCAGAGG AACGCAGACA GAAGCTGTGT TCTGTGATCC TGCCCACTGA TTCCATGAAG GCAATGGCTG AGTCGGTGGG TATAGGCTCA CTGCAGGAAG ACAGCTGTCT GACCCTCAGT GAAGAAGTTA GCTACAGGAT CAAAGAGATT GCACAGGATG CATTGAAGTT TATGCACCAT GGGAAAAGAT GCAAACTTAC AACTGGTGAC ATTGATCATG CCCTTAAACT GAAAAATGTG GAGCCACTGT ATGGATTCCA GTCCGAGGAG TTCATCCCAT TTCGCTTTGC AAGTGGAGGT GGCAGAGAAT TGCACTTTTA TGAAGAAAAA GAAGTGGATC TTAGTGACAT CATTAATACA CCCTTGCCTC GTGTACCTTT AGACGTTTCA CTAAAAGCTC ACTGGCTAAG TATAGATGGT GTCCAGCCTG CAATTCCAGA GAACCCACCT TCTGCTTCTA AAGAGCAGCA GAAGGCAGAG TCTACTGAGC CGCTTAAAGC TGTCAAACCT GGACAGGAAG ACGAAGGCTT TATTCAAGCC AAGGGTCAGA GTGCAGTTTC TGCTGAAGTC AAAGGAAAGG AAAAGATGCG GATGAAACCA CGTAGCACAC ATGAGCTCTC TGTGGAGCAG CAGTTGTACT ATAAAGAAAT TACTGAAGCC TGTGTGGGAT CCTGTGAAGC CAAAAGAGCG GAGGCACTGC AGAGCATAGC CACCGACCCA GGGCTGTACC AAATGCTGCC AAGGTTCAGT ACCTTCATCT CGGAGGGTGT GCGTGTAAAT GTTGTTCAGA ATAACTTGGC TTTGCTGATA TATTTGATGA GGATGGTGAA GGCTCTAATG GACAATCCAA CTCTATATTT GGAGAAATAT CTCCATGAGT TGATCCCCGC GGTGGTGACA TGTATTGTGA GTAAGCAACT GTGTTTGAGG CCTGATGTAG ACAATCACTG GGCTCTGCGA GACTTTGCTG CCCGGTTAAT GGCTCAGAGC TGCAAAACAT TCAGCACCAC AACCAACAAC ATCCAGTCGC GTATCACCAA AACCTTTACT AAGGCATTGT TGGATGAAAA GACTCAGTGG ACAACTCGTT ATGGCTGCAT TGCTGGACTT GCTGAACTTG GGCATGATGT GATAAAGACT TTGATCATCC CCCGACTGTT TGTAGAGGGT GCCCGTATTA AAGCAGTGAT GGATGGGCCA GTGGTATCCA ATATTGATAA GATTGGAGCT GATCATGTCC AGAGTCTATT ACTGAAACAT TGTGCAAGTG TGGTTGCTAA AACTAGGCCG GTCCCAGATC TGGTGGAGCA ATACAAAGCA GATTATGGTT ATCTGGGCAC TATGCTATGT TCACATGTGG TGAAGGCCCG TGCACAGGCT GCCTTTCAGG CCCAAACTGT TAACAGAACC ACACTTACTA TCACACAGCC ACGTCCGACT TTGACAATGT CTCAGAGTGG ATTGTCAACA TCAGGTGTTT CACGTACACC CAGCATAATT AAAGTACCCA GTTCACTTAC CCTCATGTCT ACTCGACCTG GAACACCCAC TCAGCCATCA CCCCCAGCAA CAAAGTATAT TGTTATGGCA ACAAGTGCAG GGGCTGCATC CACACAGCAG GTAATCACTC TCAGCTCCTC TCAGTCTGGA TCCCCTGTCA CAAGTACAGT CCCCAGCACA CCAACAAGTC TACAGCCACT CGTCAAACTG GAGTCTGGAA ATCCAGGTGC TGTGGGCAGC TCACGCCCAA TCCAGAAATA TATTGTGGTG TCTTTGCCTT CATCCTCTTC ATCAATGGAT AATAAGGGCT CAGGTGTCCT TTCCTCTTCT ACCTCACCTA TCAGCATGGA GTCTGCAGTC AAGCTGGAAT GTTCAGAATC ACCAGCCACA AGCACACAAT TGCCACATTG A |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.