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ctbp1 cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol ctbp1
Entrez Gene ID 65229
Full Name C-terminal binding protein 1
Synonyms wu:fi43a11
General protein information
Preferred Names

C-terminal binding protein 1

Names

C-terminal binding protein 1
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_005173133.2 XP_005173190.1 C-terminal binding protein 1 isoform X1
NM_131714.2 NP_571789.2 C-terminal binding protein 1

Pathways from BioSystems


Homologies


Magnaporthe oryzae (rice blast fungus) MGG_08725 XP_003719259.1
Arabidopsis thaliana (thale cress) AN NP_563629.1
Danio rerio (zebrafish) ctbp1 NP_571789.2
Schizosaccharomyces pombe (fission yeast) SPAC186.07c NP_595025.1
Gallus gallus (chicken) LOC416354 NP_001025795.1
Schizosaccharomyces pombe (fission yeast) SPAC186.02c NP_595020.1
Oryza sativa (rice) Os10g0533000 NP_001065152.1
Neurospora crassa NCU00780 XP_964936.1
Xenopus tropicalis (tropical clawed frog) ctbp2 NP_001016866.1

Gene Ontology


Bibliography

Related articles in PubMed

Transcriptional and histological alterations in gonad of adult zebrafish after exposure to the synthetic progestin norgestrel.
Shi WJ, Zhao JL, Jiang YX, Huang GY, Liu YS, Zhang JN, Ying GG
Environmental toxicology and chemistry36(12)3267-3276(2017 Dec)

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Characterization of Ribeye subunits in zebrafish hair cells reveals that exogenous Ribeye B-domain and CtBP1 localize to the basal ends of synaptic ribbons.
Sheets L, Hagen MW, Nicolson T
PloS one9(9)e107256(2014)

DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC.
Rai K, Sarkar S, Broadbent TJ, Voas M, Grossmann KF, Nadauld LD, Dehghanizadeh S, Hagos FT, Li Y, Toth RK, Chidester S, Bahr TM, Johnson WE, Sklow B, Burt R, Cairns BR, Jones DA
Cell142(6)930-42(2010 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

In zebrafish hair cells exogenous Ribeye B-domain and CtBP1 localize to the basal ends of synaptic ribbons.
Title: Characterization of Ribeye subunits in zebrafish hair cells reveals that exogenous Ribeye B-domain and CtBP1 localize to the basal ends of synaptic ribbons.

Tel orchestrates endothelial sprouting by binding to the generic co-repressor, CtBP
Title: Control of endothelial sprouting by a Tel-CtBP complex.

The following ctbp1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ctbp1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa33634 NM_131714.2
Latest version!		 Danio rerio C-terminal binding protein 1 (ctbp1), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $258.30
$369.00
ODa19544 XM_005173133.2
Latest version!		 Danio rerio C-terminal binding protein 1 (ctbp1), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $258.30
$369.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa33634
Clone ID Related Accession (Same CDS sequence) NM_131714.2
Accession Version NM_131714.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1350bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-01-26
Organism Danio rerio(zebrafish)
Product C-terminal binding protein 1
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC045280.1. On Dec 20, 2003 this sequence version replaced NM_131714.1. ##Evidence-Data-START## Transcript exon combination :: BC045280.1, AB032415.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
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361
421
481
541
601
661
721
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841
901
961
1021
1081
1141
1201
1261
1321
ATGGCTCTGA TGGACAAACA CAAAGTGAAG CGGCAGAGAT TGGACCGCAT CTGTGAAGGC 
ATTCGACCGC CCATCCTCAA TGGCCCAATG CACCCTCGTC CTCTGGTGGC GCTGCTGGAT 
GGACGGGACT GTACAGTGGA GATGCCCATC CTGAAGGACG TGGCCACTGT GGCTTTCTGC 
GATGCCCAGT CCACCCAGGA GATCCATGAG AAGGTCTTAA ATGAGGCTGT TGCTGCTCTG 
CTCTACCACA CCATTACACT GTCACGAGAT GACCTGGACA AATTCAAAGG CCTCAGGGTC 
ATTGTGAGGA TCGGTAGTGG GTTCGACAAC GTTGATATTA AAGCAGCAGC AGAGCTTGGT 
ATTGCAGTGT GTAATGTGCC AGCTGCATCT GTGGAGGAGA CGGCAGACAC TGCCATGTGT 
CTAATTCTGA ATCTGTACCG CCGCGTCACT TGGATGCATC AGGCACTGCG TGAAGGCACC 
CGAGCCTCCA GCGTGGAGCA GATCCGGGAA GTAGCCGGAG GCGCAGCACG TATTCGAGGA 
GAAACGCTGG GCATCATTGG GCTGGGACGT GTGGGGCAGG CAGTGGCTCT AAGGGCGAAA 
GCCTTTGGAT TTGGAGTGAT TTTCTACGAC CCGTACCTGC CTAATGGAGT GGAGCGATCA 
CTAGGGCTCC AGCGCATGGC GACACTACAG GACCTGCTTA TGCACTCGGA CTGTGTCTCG 
CTACACTGCA GCCTAAATGA ACACAACCAC CACCTCATCA ATGACTTCAC CATCAGACAG 
ATGCGTCAAG GCGCCTTCCT TGTGAACACT GCGCGTGGTG GTCTTGTGGA TGAGAAAGCT 
CTGGCTCAGG CTCTGAAAGA GGGCAGAATA CGAGGAGCAG CACTGGACGT CCACGAGACA 
GAGCCCTTCA GTTTCTCTCA GGGCCCACTG AAGGATGCCC CTAATCTTAT CTGTACCCCA 
CACACATCCT GGTACAGTGA ACAGGCCTCC ATTGAGGCCC GAGAGGAGGC AGCGCGGGAG 
GTGCGCAGAG CCATCACAGG TCGTATCCCA GACAGTCTGA AGAACTGTGT GAATAAGGAG 
TATTTGATGG CAGCCTCTCA GTGGCCGTCT ATGGAGGCCA CCACTGTGCA CTCTGAACTC 
AATGGAGCTG CAGCCTATAG GTTTCCTGCA GGGCTGATTG GCGTAGCAGC GGGTGGGCTG 
CCCGGAGCCG GGGCAGGAGT GGAGGGCATT GTGGCTGGAT CTCTACCCCT GGCCCACGCC 
ATCGCCCCGG TCTCGCACCC ACCTCATACC CCTTCCCCCG GGCAACCCTC CAAGGCCGAG 
GCAGACAGAG ACATCCCTTC CGACCAATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_571789.2
CDS206..1555
Translation

Target ORF information:

RefSeq Version NM_131714.2
Organism Danio rerio(zebrafish)
Definition Danio rerio C-terminal binding protein 1 (ctbp1), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_131714.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
ATGGCTCTGA TGGACAAACA CAAAGTGAAG CGGCAGAGAT TGGACCGCAT CTGTGAAGGC 
ATTCGACCGC CCATCCTCAA TGGCCCAATG CACCCTCGTC CTCTGGTGGC GCTGCTGGAT 
GGACGGGACT GTACAGTGGA GATGCCCATC CTGAAGGACG TGGCCACTGT GGCTTTCTGC 
GATGCCCAGT CCACCCAGGA GATCCATGAG AAGGTCTTAA ATGAGGCTGT TGCTGCTCTG 
CTCTACCACA CCATTACACT GTCACGAGAT GACCTGGACA AATTCAAAGG CCTCAGGGTC 
ATTGTGAGGA TCGGTAGTGG GTTCGACAAC GTTGATATTA AAGCAGCAGC AGAGCTTGGT 
ATTGCAGTGT GTAATGTGCC AGCTGCATCT GTGGAGGAGA CGGCAGACAC TGCCATGTGT 
CTAATTCTGA ATCTGTACCG CCGCGTCACT TGGATGCATC AGGCACTGCG TGAAGGCACC 
CGAGCCTCCA GCGTGGAGCA GATCCGGGAA GTAGCCGGAG GCGCAGCACG TATTCGAGGA 
GAAACGCTGG GCATCATTGG GCTGGGACGT GTGGGGCAGG CAGTGGCTCT AAGGGCGAAA 
GCCTTTGGAT TTGGAGTGAT TTTCTACGAC CCGTACCTGC CTAATGGAGT GGAGCGATCA 
CTAGGGCTCC AGCGCATGGC GACACTACAG GACCTGCTTA TGCACTCGGA CTGTGTCTCG 
CTACACTGCA GCCTAAATGA ACACAACCAC CACCTCATCA ATGACTTCAC CATCAGACAG 
ATGCGTCAAG GCGCCTTCCT TGTGAACACT GCGCGTGGTG GTCTTGTGGA TGAGAAAGCT 
CTGGCTCAGG CTCTGAAAGA GGGCAGAATA CGAGGAGCAG CACTGGACGT CCACGAGACA 
GAGCCCTTCA GTTTCTCTCA GGGCCCACTG AAGGATGCCC CTAATCTTAT CTGTACCCCA 
CACACATCCT GGTACAGTGA ACAGGCCTCC ATTGAGGCCC GAGAGGAGGC AGCGCGGGAG 
GTGCGCAGAG CCATCACAGG TCGTATCCCA GACAGTCTGA AGAACTGTGT GAATAAGGAG 
TATTTGATGG CAGCCTCTCA GTGGCCGTCT ATGGAGGCCA CCACTGTGCA CTCTGAACTC 
AATGGAGCTG CAGCCTATAG GTTTCCTGCA GGGCTGATTG GCGTAGCAGC GGGTGGGCTG 
CCCGGAGCCG GGGCAGGAGT GGAGGGCATT GTGGCTGGAT CTCTACCCCT GGCCCACGCC 
ATCGCCCCGG TCTCGCACCC ACCTCATACC CCTTCCCCCG GGCAACCCTC CAAGGCCGAG 
GCAGACAGAG ACATCCCTTC CGACCAATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa19544
Clone ID Related Accession (Same CDS sequence) XM_005173133.2
Accession Version XM_005173133.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1497bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product C-terminal binding protein 1 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007125.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005173133.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
ATGGAGGCTT GTGCTGGTTG GCCGGCACTC AGAGCCCAGG CGTCTGATTG GACCGCGGCT 
GTGGTGGACG GGGCCAGTGT GGATGACATG GGAGATGGGT GTCTGCCAGG CAAAAACAGC 
CTGACACTGA TTGTAAAGGG TGGAGAGAGA GCGATAGAAG GAGAGGAGGG GAGAGAAGAC 
AGGCGTGTGG ATTTCATGAT GCAAGGCATT CGACCACCCA TCCTCAATGG CCCAATGCAC 
CCTCGTCCTC TGGTGGCGCT GCTGGATGGA CGGGACTGTA CAGTGGAGAT GCCCATCCTG 
AAGGACGTGG CCACTGTGGC TTTCTGCGAT GCCCAGTCCA CCCAGGAGAT CCATGAGAAG 
GTCTTAAATG AGGCTGTTGC TGCTCTGCTC TACCACACCA TTACACTGTC ACGAGATGAC 
CTGGACAAAT TCAAAGGCCT CAGGGTCATT GTGAGGATCG GTAGTGGGTT CGACAACGTT 
GATATTAAAG CAGCAGCAGA GCTTGGTATT GCAGTGTGTA ATGTGCCAGC TGCATCTGTG 
GAGGAGACGG CAGACACTGC CATGTGTCTA ATTCTGAATC TGTACCGCCG CGTCACTTGG 
ATGCATCAGG CACTGCGTGA AGGCACCCGA GCCTCCAGCG TGGAGCAGAT CCGGGAAGTA 
GCCGGAGGCG CAGCACGTAT TCGAGGAGAA ACGCTGGGCA TCATTGGGCT GGGACGTGTG 
GGGCAGGCAG TGGCTCTAAG GGCGAAAGCC TTTGGATTTG GAGTGATTTT CTACGACCCG 
TACCTGCCTG ATGGAGTGGA GCGATCACTA GGGCTCCAGC GCATGGCGAC ACTACAGGAC 
CTGCTTATGC ACTCGGACTG TGTCTCGCTA CACTGCAGCC TAAATGAACA CAACCACCAC 
CTCATCAATG ACTTCACCAT CAAACAGATG CGTCAAGGCG CCTTCCTTGT GAACACTGCG 
CGTGGTGGTC TTGTGGATGA GAAAGCTCTG GCTCAGGCTC TGAAAGAGGG CAGAATACGA 
GGAGCAGCAC TGGACGTCCA CGAGACAGAG CCCTTCAGTT TCTCTCAGGG CCCACTGAAG 
GATGCCCCTA ATCTTATCTG TACCCCACAC ACATCCTGGT ACAGTGAACA GGCCTCCATT 
GAGGCCCGAG AGGAGGCAGC GCGGGAGGTG CGCAGAGCCA TCACAGGTCG TATCCCAGAC 
AGTCTGAAGA ACTGTGTGAA TAAGGAGTAT TTGATGGCAG CCTCTCAGTG GCCGTCTATG 
GAGGCCACCA CTGTGCACTC TGAACTCAAT GGAGCTGCAG CCTATAGGTT TCCTGCAGGG 
CTGATTGGCG TAGCAGCGGG TGGGCTGCCC GGAGCCGGGG CAGGAGTGGA GGGCATTGTG 
GCTGGATCTC TACCACTGGC CCACGCCATC GCCCCGGTCT CGCACCCACC TCATACCCCT 
TCCCCCGGGC AACCCTCCAA GGCTGAGGCA GACAGAGACA TCCCTTCCGA CCAATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_005173190.1
CDS16..1512
Translation

Target ORF information:

RefSeq Version XM_005173133.2
Organism Danio rerio(zebrafish)
Definition Danio rerio C-terminal binding protein 1 (ctbp1), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_005173133.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
ATGGAGGCTT GTGCTGGTTG GCCGGCACTC AGAGCCCAGG CGTCTGATTG GACCGCGGCT 
GTGGTGGACG GGGCCAGTGT GGATGACATG GGAGATGGGT GTCTGCCAGG CAAAAACAGC 
CTGACACTGA TTGTAAAGGG TGGAGAGAGA GCGATAGAAG GAGAGGAGGG GAGAGAAGAC 
AGGCGTGTGG ATTTCATGAT GCAAGGCATT CGACCACCCA TCCTCAATGG CCCAATGCAC 
CCTCGTCCTC TGGTGGCGCT GCTGGATGGA CGGGACTGTA CAGTGGAGAT GCCCATCCTG 
AAGGACGTGG CCACTGTGGC TTTCTGCGAT GCCCAGTCCA CCCAGGAGAT CCATGAGAAG 
GTCTTAAATG AGGCTGTTGC TGCTCTGCTC TACCACACCA TTACACTGTC ACGAGATGAC 
CTGGACAAAT TCAAAGGCCT CAGGGTCATT GTGAGGATCG GTAGTGGGTT CGACAACGTT 
GATATTAAAG CAGCAGCAGA GCTTGGTATT GCAGTGTGTA ATGTGCCAGC TGCATCTGTG 
GAGGAGACGG CAGACACTGC CATGTGTCTA ATTCTGAATC TGTACCGCCG CGTCACTTGG 
ATGCATCAGG CACTGCGTGA AGGCACCCGA GCCTCCAGCG TGGAGCAGAT CCGGGAAGTA 
GCCGGAGGCG CAGCACGTAT TCGAGGAGAA ACGCTGGGCA TCATTGGGCT GGGACGTGTG 
GGGCAGGCAG TGGCTCTAAG GGCGAAAGCC TTTGGATTTG GAGTGATTTT CTACGACCCG 
TACCTGCCTG ATGGAGTGGA GCGATCACTA GGGCTCCAGC GCATGGCGAC ACTACAGGAC 
CTGCTTATGC ACTCGGACTG TGTCTCGCTA CACTGCAGCC TAAATGAACA CAACCACCAC 
CTCATCAATG ACTTCACCAT CAAACAGATG CGTCAAGGCG CCTTCCTTGT GAACACTGCG 
CGTGGTGGTC TTGTGGATGA GAAAGCTCTG GCTCAGGCTC TGAAAGAGGG CAGAATACGA 
GGAGCAGCAC TGGACGTCCA CGAGACAGAG CCCTTCAGTT TCTCTCAGGG CCCACTGAAG 
GATGCCCCTA ATCTTATCTG TACCCCACAC ACATCCTGGT ACAGTGAACA GGCCTCCATT 
GAGGCCCGAG AGGAGGCAGC GCGGGAGGTG CGCAGAGCCA TCACAGGTCG TATCCCAGAC 
AGTCTGAAGA ACTGTGTGAA TAAGGAGTAT TTGATGGCAG CCTCTCAGTG GCCGTCTATG 
GAGGCCACCA CTGTGCACTC TGAACTCAAT GGAGCTGCAG CCTATAGGTT TCCTGCAGGG 
CTGATTGGCG TAGCAGCGGG TGGGCTGCCC GGAGCCGGGG CAGGAGTGGA GGGCATTGTG 
GCTGGATCTC TACCACTGGC CCACGCCATC GCCCCGGTCT CGCACCCACC TCATACCCCT 
TCCCCCGGGC AACCCTCCAA GGCTGAGGCA GACAGAGACA TCCCTTCCGA CCAATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Transcriptional and histological alterations in gonad of adult zebrafish after exposure to the synthetic progestin norgestrel.
Environmental toxicology and chemistry36(12)3267-3276(2017 Dec)
Shi WJ,Zhao JL,Jiang YX,Huang GY,Liu YS,Zhang JN,Ying GG


book

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG


book

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J


book

Characterization of Ribeye subunits in zebrafish hair cells reveals that exogenous Ribeye B-domain and CtBP1 localize to the basal ends of synaptic ribbons.
PloS one9(9)e107256(2014)
Sheets L,Hagen MW,Nicolson T


book

DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC.
Cell142(6)930-42(2010 Sep)
Rai K,Sarkar S,Broadbent TJ,Voas M,Grossmann KF,Nadauld LD,Dehghanizadeh S,Hagos FT,Li Y,Toth RK,Chidester S,Bahr TM,Johnson WE,Sklow B,Burt R,Cairns BR,Jones DA