Gene Symbol | Ubp1 |
Entrez Gene ID | 301038 |
Full Name | upstream binding protein 1 |
Synonyms | RGD1564700 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Ubp1 cDNA ORF clone
Gene Symbol | Ubp1 |
Entrez Gene ID | 301038 |
Full Name | upstream binding protein 1 |
Synonyms | RGD1564700 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001191819.2 | NP_001178748.1 | upstream-binding protein 1 |
NM_001191819.1 | NP_001178748.1 | upstream-binding protein 1 |
XM_008766631.1 | XP_008764853.1 | upstream-binding protein 1 isoform X2 |
XM_008766630.1 | XP_008764852.1 | upstream-binding protein 1 isoform X1 |
XM_006243962.1 | XP_006244024.1 | upstream-binding protein 1 isoform X3 |
Rattus norvegicus (Norway rat) | Ubp1 | NP_001178748.1 |
Canis lupus familiaris (dog) | UBP1 | XP_005634259.1 |
Danio rerio (zebrafish) | ubp1 | NP_001108046.1 |
UBP1 | XP_001099731.1 | |
Bos taurus (cattle) | UBP1 | XP_003587658.1 |
Mus musculus (house mouse) | Ubp1 | NP_001076788.1 |
Pan troglodytes (chimpanzee) | UBP1 | XP_001168549.2 |
Homo sapiens (human) | UBP1 | NP_001121633.1 |
Gallus gallus (chicken) | UBP1 | XP_426018.3 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP007065 | XP_308698.4 |
Defective extraembryonic angiogenesis in mice lacking LBP-1a, a member of the grainyhead family of transcription factors.
Parekh V, McEwen A, Barbour V, Takahashi Y, Rehg JE, Jane SM, Cunningham JM
Molecular and cellular biology24(16)7113-29(2004 Aug)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Ubp1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ubp1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa25641 | |
Clone ID Related Accession (Same CDS sequence) | NM_001191819.2 , NM_001191819.1 | |
Accession Version | NM_001191819.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1623bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-31 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | upstream-binding protein 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from FN798828.1, FM064075.1, AABR07071565.1, BQ780402.1 and FM039161.1. On Aug 5, 2017 this sequence version replaced NM_001191819.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001178748.1 |
CDS | 191..1813 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001191819.2 |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa25641 | |
Clone ID Related Accession (Same CDS sequence) | NM_001191819.2 , NM_001191819.1 | |
Accession Version | NM_001191819.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1623bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2010-07-17 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | upstream-binding protein 1 | |
Comment | PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AABR03065851.1 and AABR03062296.1. On Jul 17, 2010 this sequence version replaced XM_238562.5. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001178748.1 |
CDS | 202..1824 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001191819.1 |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa31698 | |
Clone ID Related Accession (Same CDS sequence) | XM_006243962.1 | |
Accession Version | XM_006243962.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1515bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | upstream-binding protein 1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006244024.1 |
CDS | 185..1699 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006243962.1 |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa45788 | |
Clone ID Related Accession (Same CDS sequence) | XM_008766630.1 | |
Accession Version | XM_008766630.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1644bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | upstream-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008764852.1 |
CDS | 234..1877 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008766630.1 |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa45789 | |
Clone ID Related Accession (Same CDS sequence) | XM_008766631.1 | |
Accession Version | XM_008766631.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1536bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | upstream-binding protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008764853.1 |
CDS | 185..1720 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008766631.1 |
1 | ATGGCCTGGG TGCTCAGTAT GGACGAGGTG ATCGAGTCCG GGCTGGTGCA CGACTTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Defective extraembryonic angiogenesis in mice lacking LBP-1a, a member of the grainyhead family of transcription factors. |