mRNA and Protein(s)
mRNA |
Protein |
Name |
NM_001173341.1 |
NP_001166812.1 |
high mobility group protein B3 |
XM_003751682.3 |
XP_003751730.1 |
high mobility group protein B3 isoform X1 |
Pan troglodytes (chimpanzee) |
LOC473737 |
XP_003317692.2 |
Rattus norvegicus (Norway rat) |
Hmgb3 |
NP_001166812.1 |
Danio rerio (zebrafish) |
hmgb3b |
NP_001017769.1 |
Mus musculus (house mouse) |
Hmgb3 |
NP_032279.1 |
Rattus norvegicus (Norway rat) |
LOC100912369 |
XP_003751730.1 |
Danio rerio (zebrafish) |
hmgb3a |
NP_001116308.1 |
Related articles in PubMed
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Baltz AG, Munschauer M, Schwanh?usser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M
Molecular cell46(5)674-90(2012 Jun)
HMGB proteins function as universal sentinels for nucleic-acid-mediated innate immune responses.
Yanai H, Ban T, Wang Z, Choi MK, Kawamura T, Negishi H, Nakasato M, Lu Y, Hangai S, Koshiba R, Savitsky D, Ronfani L, Akira S, Bianchi ME, Honda K, Tamura T, Kodama T, Taniguchi T
Nature462(7269)99-103(2009 Nov)
Hmgb3: an HMG-box family member expressed in primitive hematopoietic cells that inhibits myeloid and B-cell differentiation.
Nemeth MJ, Curtis DJ, Kirby MR, Garrett-Beal LJ, Seidel NE, Cline AP, Bodine DM
Blood102(4)1298-306(2003 Aug)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Hmgb3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Hmgb3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
ORa06473 |
Clone ID Related Accession (Same CDS sequence) |
NM_001173341.1
|
Accession Version |
NM_001173341.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 603bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-12-22 |
Organism |
Rattus norvegicus(Norway rat) |
Product |
high mobility group protein B3 |
Comment |
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EV772004.1 and BC158739.1. On or before May 13, 2010 this sequence version replaced XM_001067329.2, XM_002727293.1, XM_223440.5, XM_002730310.1.
##Evidence-Data-START##
Transcript exon combination :: EV767247.1, EV767014.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601
| ATGGCTAAAG GTGATCCCAA GAAACCAAAG GGCAAGATGT CCGCCTATGC CTTCTTCGTG CAGACGTGCA GGGAAGAACA CAAGAAGAAA AACCCAGAGG TTCCAGTCAA CTTTGCTGAG TTTTCCAAGA AGTGCTCTGA GAGGTGGAAG ACGATGTCTA GCAAAGAGAA ATCAAAGTTT GACGAAATGG CCAAGGCGGA TAAGGTACGC TACGATCGTG AAATGAAAGA TTATGGGCCA GCTAAAGGAG GCAAAAAGAA GAAGGACCCG AATGCCCCCA AAAGACCTCC GTCTGGATTT TTCTTGTTCT GCTCTGAATT CCGCCCGAAG ATCAAATCTG CAAACCCTGG CATCTCTATT GGAGATGTGG CCAAAAAGCT GGGTGAGATG TGGAATAACT TAAGTGACAG TGAAAAGCAG CCTTACATGA CCAAGGCAGC AAAGCTGAAG GAGAAGTATG AGAAGGATGT TGCTGACTAT AAGTCTAAAG GGAAGTTTGA TGGTGCCAAG GGTCCTGCTA AAGTTGCCCG GAAAAAGGTG GAAGAAGAGG AGGAGGAGGA GGAAGAAGAA GAGGAGGAGG AGGAAGAGGA AGAAGATGAA TAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001166812.1 |
CDS | 71..673 |
Translation | |
Target ORF information:
RefSeq Version | NM_001173341.1 |
Organism | Rattus norvegicus(Norway rat) |
Definition | Rattus norvegicus high mobility group box 3 (Hmgb3), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001173341.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601
| ATGGCTAAAG GTGATCCCAA GAAACCAAAG GGCAAGATGT CCGCCTATGC CTTCTTCGTG CAGACGTGCA GGGAAGAACA CAAGAAGAAA AACCCAGAGG TTCCAGTCAA CTTTGCTGAG TTTTCCAAGA AGTGCTCTGA GAGGTGGAAG ACGATGTCTA GCAAAGAGAA ATCAAAGTTT GACGAAATGG CCAAGGCGGA TAAGGTACGC TACGATCGTG AAATGAAAGA TTATGGGCCA GCTAAAGGAG GCAAAAAGAA GAAGGACCCG AATGCCCCCA AAAGACCTCC GTCTGGATTT TTCTTGTTCT GCTCTGAATT CCGCCCGAAG ATCAAATCTG CAAACCCTGG CATCTCTATT GGAGATGTGG CCAAAAAGCT GGGTGAGATG TGGAATAACT TAAGTGACAG TGAAAAGCAG CCTTACATGA CCAAGGCAGC AAAGCTGAAG GAGAAGTATG AGAAGGATGT TGCTGACTAT AAGTCTAAAG GGAAGTTTGA TGGTGCCAAG GGTCCTGCTA AAGTTGCCCG GAAAAAGGTG GAAGAAGAGG AGGAGGAGGA GGAAGAAGAA GAGGAGGAGG AGGAAGAGGA AGAAGATGAA TAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ORa36104 |
Clone ID Related Accession (Same CDS sequence) |
XM_003751682.3
|
Accession Version |
XM_003751682.3 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 726bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-07-25 |
Organism |
Rattus norvegicus(Norway rat) |
Product |
high mobility group protein B3 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005116.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Aug 7, 2014 this sequence version replaced XM_003751682.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Rattus norvegicus Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTTCCGCA GCTGCAGCGG CGCCCACACA ACTTTCCACC CGCGCCTCCA CTCCCGCGTC CTTGCTACCC CTTCTCCTTT TTCGCTGCTC GGCGGCAGGG AAGGAAGACG CCATTCAGTC AGGATGGCTA AAGGTGATCC CAAGAAACCA AAGGGCAAGA TGTCCGCCTA TGCCTTCTTC GTGCAGACGT GCAGGGAAGA ACACAAGAAG AAAAACCCAG AGGTTCCAGT CAACTTTGCT GAGTTTTCCA AGAAGTGCTC TGAGAGGTGG AAGACGATGT CTAGCAAAGA GAAATCAAAG TTTGACGAAA TGGCCAAGGC GGATAAGGTA CGCTACGATC GTGAAATGAA AGATTATGGG CCAGCTAAAG GAGGCAAAAA GAAGAAGGAC CCGAATGCCC CCAAAAGACC TCCGTCTGGA TTTTTCTTGT TCTGCTCTGA ATTCCGCCCG AAGATCAAAT CTGCAAACCC TGGCATCTCT ATTGGAGATG TGGCCAAAAA GCTGGGTGAG ATGTGGAATA ACTTAAGTGA CAGTGAAAAG CAGCCTTACA TGACCAAGGC AGCAAAGCTG AAGGAGAAGT ATGAGAAGGA TGTTGCTGAC TATAAGTCTA AAGGGAAGTT TGATGGTGCC AAGGGTCCTG CTAAAGTTGC CCGGAAAAAG GTGGAAGAAG AGGAGGAGGA GGAGGAAGAA GAAGAGGAGG AGGAGGAAGA GGAAGAAGAT GAATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_003751730.1 |
CDS | 36..761 |
Translation | |
Target ORF information:
RefSeq Version | XM_003751682.3 |
Organism | Rattus norvegicus(Norway rat) |
Definition | Rattus norvegicus high mobility group box 3 (Hmgb3), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_003751682.3 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTTCCGCA GCTGCAGCGG CGCCCACACA ACTTTCCACC CGCGCCTCCA CTCCCGCGTC CTTGCTACCC CTTCTCCTTT TTCGCTGCTC GGCGGCAGGG AAGGAAGACG CCATTCAGTC AGGATGGCTA AAGGTGATCC CAAGAAACCA AAGGGCAAGA TGTCCGCCTA TGCCTTCTTC GTGCAGACGT GCAGGGAAGA ACACAAGAAG AAAAACCCAG AGGTTCCAGT CAACTTTGCT GAGTTTTCCA AGAAGTGCTC TGAGAGGTGG AAGACGATGT CTAGCAAAGA GAAATCAAAG TTTGACGAAA TGGCCAAGGC GGATAAGGTA CGCTACGATC GTGAAATGAA AGATTATGGG CCAGCTAAAG GAGGCAAAAA GAAGAAGGAC CCGAATGCCC CCAAAAGACC TCCGTCTGGA TTTTTCTTGT TCTGCTCTGA ATTCCGCCCG AAGATCAAAT CTGCAAACCC TGGCATCTCT ATTGGAGATG TGGCCAAAAA GCTGGGTGAG ATGTGGAATA ACTTAAGTGA CAGTGAAAAG CAGCCTTACA TGACCAAGGC AGCAAAGCTG AAGGAGAAGT ATGAGAAGGA TGTTGCTGAC TATAAGTCTA AAGGGAAGTT TGATGGTGCC AAGGGTCCTG CTAAAGTTGC CCGGAAAAAG GTGGAAGAAG AGGAGGAGGA GGAGGAAGAA GAAGAGGAGG AGGAGGAAGA GGAAGAAGAT GAATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Molecular cell46(5)674-90(2012 Jun)
Baltz AG,Munschauer M,Schwanh?usser B,Vasile A,Murakawa Y,Schueler M,Youngs N,Penfold-Brown D,Drew K,Milek M,Wyler E,Bonneau R,Selbach M,Dieterich C,Landthaler M |
 |
HMGB proteins function as universal sentinels for nucleic-acid-mediated innate immune responses.
Nature462(7269)99-103(2009 Nov)
Yanai H,Ban T,Wang Z,Choi MK,Kawamura T,Negishi H,Nakasato M,Lu Y,Hangai S,Koshiba R,Savitsky D,Ronfani L,Akira S,Bianchi ME,Honda K,Tamura T,Kodama T,Taniguchi T |