Gene Symbol | Vps50 |
Entrez Gene ID | 312083 |
Full Name | VPS50 EARP/GARPII complex subunit |
Synonyms | Ccdc132,RGD1304751 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Vps50 cDNA ORF clone
Gene Symbol | Vps50 |
Entrez Gene ID | 312083 |
Full Name | VPS50 EARP/GARPII complex subunit |
Synonyms | Ccdc132,RGD1304751 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006236037.3 | XP_006236099.1 | syndetin isoform X2 |
NM_001173511.1 | NP_001166982.1 | syndetin |
XM_008762704.2 | XP_008760926.1 | syndetin isoform X1 |
Homo sapiens (human) | CCDC132 | NP_060137.2 |
Pan troglodytes (chimpanzee) | CCDC132 | XP_519203.3 |
Bos taurus (cattle) | CCDC132 | NP_001098883.1 |
Canis lupus familiaris (dog) | CCDC132 | XP_532460.4 |
Mus musculus (house mouse) | Ccdc132 | NP_077222.4 |
Gallus gallus (chicken) | CCDC132 | NP_001012872.1 |
Arabidopsis thaliana (thale cress) | AT2G27900 | NP_001031433.1 |
Rattus norvegicus (Norway rat) | Ccdc132 | NP_001166982.1 |
Caenorhabditis elegans (roundworm) | C44B9.1 | NP_499394.2 |
Oryza sativa (rice) | Os10g0546300 | NP_001065215.1 |
CCDC132 | XP_001090270.2 | |
Danio rerio (zebrafish) | si:ch211-287b5.1 | XP_001923725.4 |
Drosophila melanogaster (fruit fly) | CG4996 | NP_611258.2 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP000343 | XP_310775.5 |
Xenopus tropicalis (tropical clawed frog) | ccdc132 | NP_001107716.1 |
The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles.
Topalidou I, Cattin-Ortol? J, Pappas AL, Cooper K, Merrihew GE, MacCoss MJ, Ailion M
PLoS genetics12(5)e1006074(2016 May)
EARP is a multisubunit tethering complex involved in endocytic recycling.
Schindler C, Chen Y, Pu J, Guo X, Bonifacino JS
Nature cell biology17(5)639-50(2015 May)
Defining the membrane proteome of NK cells.
Ghosh D, Lippert D, Krokhin O, Cortens JP, Wilkins JA
Journal of mass spectrometry : JMS45(1)1-25(2010 Jan)
Large-scale proteomics and phosphoproteomics of urinary exosomes.
Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA
Journal of the American Society of Nephrology : JASN20(2)363-79(2009 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Vps50 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Vps50 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa06585 | |
Clone ID Related Accession (Same CDS sequence) | NM_001173511.1 | |
Accession Version | NM_001173511.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2895bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-08 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | syndetin | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AABR07059636.1, AABR07059637.1, AABR07072975.1 and AC125620.5. On or before May 13, 2010 this sequence version replaced XM_001064458.2, XM_231428.5. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCAAAAAA TCAAATCTCT TATGACCCGG CAGGGTCTGA AGAGCCCTCC GGAGAGCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001166982.1 |
CDS | 87..2981 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001173511.1 |
1 | ATGCAAAAAA TCAAATCTCT TATGACCCGG CAGGGTCTGA AGAGCCCTCC GGAGAGCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa27001 | |
Clone ID Related Accession (Same CDS sequence) | XM_006236037.3 | |
Accession Version | XM_006236037.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2889bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | syndetin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005103.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006236037.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAAAAAA TCAAATCTCT TATGACCCGG CAGGGTCTGA AGAGCCCTCC GGAGAGCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006236099.1 |
CDS | 133..3021 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006236037.3 |
1 | ATGCAAAAAA TCAAATCTCT TATGACCCGG CAGGGTCTGA AGAGCCCTCC GGAGAGCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa47104 | |
Clone ID Related Accession (Same CDS sequence) | XM_008762704.2 | |
Accession Version | XM_008762704.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2892bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | syndetin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005103.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008762704.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAAAAAA TCAAATCTCT TATGACCCGG CAGGGTCTGA AGAGCCCTCC GGAGAGCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008760926.1 |
CDS | 133..3024 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008762704.2 |
1 | ATGCAAAAAA TCAAATCTCT TATGACCCGG CAGGGTCTGA AGAGCCCTCC GGAGAGCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles. |
EARP is a multisubunit tethering complex involved in endocytic recycling. |
Defining the membrane proteome of NK cells. |
Large-scale proteomics and phosphoproteomics of urinary exosomes. |