Gene Symbol | Ube3a |
Entrez Gene ID | 361585 |
Full Name | ubiquitin protein ligase E3A |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Ube3a cDNA ORF clone
Gene Symbol | Ube3a |
Entrez Gene ID | 361585 |
Full Name | ubiquitin protein ligase E3A |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017589369.1 | XP_017444858.1 | ubiquitin-protein ligase E3A isoform X1 |
XM_008759401.2 | XP_008757623.1 | ubiquitin-protein ligase E3A isoform X3 |
XM_006229313.3 | XP_006229375.1 | ubiquitin-protein ligase E3A isoform X3 |
XM_008759400.2 | XP_008757622.1 | ubiquitin-protein ligase E3A isoform X3 |
NM_001191837.2 | NP_001178766.1 | ubiquitin-protein ligase E3A |
XM_006229310.3 | XP_006229372.1 | ubiquitin-protein ligase E3A isoform X1 |
XM_008759399.2 | XP_008757621.1 | ubiquitin-protein ligase E3A isoform X2 |
XM_017589368.1 | XP_017444857.1 | ubiquitin-protein ligase E3A isoform X1 |
Mus musculus (house mouse) | Ube3a | NP_035798.2 |
Rattus norvegicus (Norway rat) | Ube3a | NP_001178766.1 |
Danio rerio (zebrafish) | ube3a | NP_001007319.1 |
Pan troglodytes (chimpanzee) | UBE3A | XP_001161311.1 |
Bos taurus (cattle) | UBE3A | NP_001091932.1 |
Gallus gallus (chicken) | UBE3A | XP_004938531.1 |
Drosophila melanogaster (fruit fly) | Ube3a | NP_648452.1 |
Homo sapiens (human) | UBE3A | NP_570854.1 |
UBE3A | XP_001108661.1 | |
Canis lupus familiaris (dog) | UBE3A | XP_005618288.1 |
Xenopus tropicalis (tropical clawed frog) | ube3a | NP_001001213.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP012366 | XP_551819.3 |
Ube3a reinstatement identifies distinct developmental windows in a murine Angelman syndrome model.
Silva-Santos S, van Woerden GM, Bruinsma CF, Mientjes E, Jolfaei MA, Distel B, Kushner SA, Elgersma Y
The Journal of clinical investigation125(5)2069-76(2015 May)
A coding-independent function of an alternative Ube3a transcript during neuronal development.
Valluy J, Bicker S, Aksoy-Aksel A, Lackinger M, Sumer S, Fiore R, W?st T, Seffer D, Metge F, Dieterich C, W?hr M, Schwarting R, Schratt G
Nature neuroscience18(5)666-73(2015 May)
Towards a therapy for Angelman syndrome by targeting a long non-coding RNA.
Meng L, Ward AJ, Chun S, Bennett CF, Beaudet AL, Rigo F
Nature518(7539)409-12(2015 Feb)
Long-term abstinence from developmental cocaine exposure alters Arc/Arg3.1 modulation in the rat medial prefrontal cortex.
Caffino L, Giannotti G, Malpighi C, Racagni G, Filip M, Fumagalli F
Neurotoxicity research26(3)299-306(2014 Oct)
The E3 ubiquitin ligase UBE3A is an integral component of the molecular circadian clock through regulating the BMAL1 transcription factor.
Gossan NC, Zhang F, Guo B, Jin D, Yoshitane H, Yao A, Glossop N, Zhang YQ, Fukada Y, Meng QJ
Nucleic acids research42(9)5765-75(2014 May)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Ube3a1 RNA function was independent of its coding sequence but instead required a unique 3' untranslated region and an intact microRNA pathway. Ube3a1 RNA acts as a dendritic competing endogenous RNA.
Title: A coding-independent function of an alternative Ube3a transcript during neuronal development.
The following Ube3a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ube3a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa07779 | |
Clone ID Related Accession (Same CDS sequence) | XM_017589369.1 , NM_001191837.2 , XM_006229310.3 , XM_017589368.1 | |
Accession Version | NM_001191837.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2607bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-11-19 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin-protein ligase E3A | |
Comment | Comment: INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from AABR07003599.1 and AABR07003600.1. On Jul 7, 2012 this sequence version replaced NM_001191837.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGCCACAG CTTGTAAAAG ATCATCAGGA GAATCCCAGT CTGAGGACAT TGAAGCTAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001178766.1 |
CDS | 671..3277 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001191837.2 |
1 | ATGGCCACAG CTTGTAAAAG ATCATCAGGA GAATCCCAGT CTGAGGACAT TGAAGCTAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa07779 | |
Clone ID Related Accession (Same CDS sequence) | XM_017589369.1 , NM_001191837.2 , XM_006229310.3 , XM_017589368.1 | |
Accession Version | XM_017589369.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2607bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin-protein ligase E3A isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCACAG CTTGTAAAAG ATCATCAGGA GAATCCCAGT CTGAGGACAT TGAAGCTAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017444858.1 |
CDS | 351..2957 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017589369.1 |
1 | ATGGCCACAG CTTGTAAAAG ATCATCAGGA GAATCCCAGT CTGAGGACAT TGAAGCTAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa07779 | |
Clone ID Related Accession (Same CDS sequence) | XM_017589369.1 , NM_001191837.2 , XM_006229310.3 , XM_017589368.1 | |
Accession Version | XM_006229310.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2607bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin-protein ligase E3A isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006229310.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCACAG CTTGTAAAAG ATCATCAGGA GAATCCCAGT CTGAGGACAT TGAAGCTAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006229372.1 |
CDS | 1521..4127 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006229310.3 |
1 | ATGGCCACAG CTTGTAAAAG ATCATCAGGA GAATCCCAGT CTGAGGACAT TGAAGCTAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa07779 | |
Clone ID Related Accession (Same CDS sequence) | XM_017589369.1 , NM_001191837.2 , XM_006229310.3 , XM_017589368.1 | |
Accession Version | XM_017589368.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2607bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin-protein ligase E3A isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCACAG CTTGTAAAAG ATCATCAGGA GAATCCCAGT CTGAGGACAT TGAAGCTAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017444857.1 |
CDS | 687..3293 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017589368.1 |
1 | ATGGCCACAG CTTGTAAAAG ATCATCAGGA GAATCCCAGT CTGAGGACAT TGAAGCTAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa22858 | |
Clone ID Related Accession (Same CDS sequence) | XM_008759399.2 | |
Accession Version | XM_008759399.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2604bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin-protein ligase E3A isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008759399.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAATTC TGAAATATAC CACCATCCTA AGGATGAGGA AGCTGAGACA CAGAAAGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008757621.1 |
CDS | 2729..5332 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008759399.2 |
1 | ATGAGAATTC TGAAATATAC CACCATCCTA AGGATGAGGA AGCTGAGACA CAGAAAGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa22859 | |
Clone ID Related Accession (Same CDS sequence) | XM_008759401.2 , XM_006229313.3 , XM_008759400.2 | |
Accession Version | XM_008759401.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2544bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin-protein ligase E3A isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008759401.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGCGAG CAGCTGCAAA GCATCTAATA GAGCGCTACT ACCATCAGTT AACTGAGGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008757623.1 |
CDS | 1528..4071 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008759401.2 |
1 | ATGAAGCGAG CAGCTGCAAA GCATCTAATA GAGCGCTACT ACCATCAGTT AACTGAGGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa22859 | |
Clone ID Related Accession (Same CDS sequence) | XM_008759401.2 , XM_006229313.3 , XM_008759400.2 | |
Accession Version | XM_006229313.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2544bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin-protein ligase E3A isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006229313.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGCGAG CAGCTGCAAA GCATCTAATA GAGCGCTACT ACCATCAGTT AACTGAGGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006229375.1 |
CDS | 1464..4007 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006229313.3 |
1 | ATGAAGCGAG CAGCTGCAAA GCATCTAATA GAGCGCTACT ACCATCAGTT AACTGAGGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa22859 | |
Clone ID Related Accession (Same CDS sequence) | XM_008759401.2 , XM_006229313.3 , XM_008759400.2 | |
Accession Version | XM_008759400.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2544bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin-protein ligase E3A isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008759400.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGCGAG CAGCTGCAAA GCATCTAATA GAGCGCTACT ACCATCAGTT AACTGAGGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008757622.1 |
CDS | 1640..4183 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008759400.2 |
1 | ATGAAGCGAG CAGCTGCAAA GCATCTAATA GAGCGCTACT ACCATCAGTT AACTGAGGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Ube3a reinstatement identifies distinct developmental windows in a murine Angelman syndrome model. |
A coding-independent function of an alternative Ube3a transcript during neuronal development. |
Towards a therapy for Angelman syndrome by targeting a long non-coding RNA. |
Long-term abstinence from developmental cocaine exposure alters Arc/Arg3.1 modulation in the rat medial prefrontal cortex. |
The E3 ubiquitin ligase UBE3A is an integral component of the molecular circadian clock through regulating the BMAL1 transcription factor. |